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fe.C

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// The libMesh Finite Element Library.
// Copyright (C) 2002-2012 Benjamin S. Kirk, John W. Peterson, Roy H. Stogner

// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.

// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.

// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA



// Local includes
#include "libmesh/elem.h"
#include "libmesh/fe.h"
#include "libmesh/fe_interface.h"
#include "libmesh/fe_macro.h"
#include "libmesh/libmesh_logging.h"
#include "libmesh/quadrature.h"
#include "libmesh/tensor_value.h"

namespace libMesh
{


// ------------------------------------------------------------
// FE class members
template <unsigned int Dim, FEFamily T>
unsigned int FE<Dim,T>::n_shape_functions () const
{
  return FE<Dim,T>::n_dofs (this->elem_type,
           static_cast<Order>(this->fe_type.order + this->_p_level));
}


template <unsigned int Dim, FEFamily T>
void FE<Dim,T>::attach_quadrature_rule (QBase* q)
{
  libmesh_assert(q);
  this->qrule = q;
  // make sure we don't cache results from a previous quadrature rule
  this->elem_type = INVALID_ELEM;
  return;
}


template <unsigned int Dim, FEFamily T>
unsigned int FE<Dim,T>::n_quadrature_points () const
{
  libmesh_assert(this->qrule);
  return this->qrule->n_points();
}


template <unsigned int Dim, FEFamily T>
void FE<Dim,T>::dofs_on_side(const Elem* const elem,
                             const Order o,
                             unsigned int s,
                             std::vector<unsigned int>& di)
{
  libmesh_assert(elem);
  libmesh_assert_less (s, elem->n_sides());

  di.clear();
  unsigned int nodenum = 0;
  const unsigned int n_nodes = elem->n_nodes();
  for (unsigned int n = 0; n != n_nodes; ++n)
    {
      const unsigned int n_dofs = n_dofs_at_node(elem->type(),
                                                 static_cast<Order>(o + elem->p_level()), n);
      if (elem->is_node_on_side(n, s))
        for (unsigned int i = 0; i != n_dofs; ++i)
          di.push_back(nodenum++);
      else
        nodenum += n_dofs;
    }
}



template <unsigned int Dim, FEFamily T>
void FE<Dim,T>::dofs_on_edge(const Elem* const elem,
                             const Order o,
                             unsigned int e,
                             std::vector<unsigned int>& di)
{
  libmesh_assert(elem);
  libmesh_assert_less (e, elem->n_edges());

  di.clear();
  unsigned int nodenum = 0;
  const unsigned int n_nodes = elem->n_nodes();
  for (unsigned int n = 0; n != n_nodes; ++n)
    {
      const unsigned int n_dofs = n_dofs_at_node(elem->type(),
                                                 static_cast<Order>(o + elem->p_level()), n);
      if (elem->is_node_on_edge(n, e))
        for (unsigned int i = 0; i != n_dofs; ++i)
          di.push_back(nodenum++);
      else
        nodenum += n_dofs;
    }
}



template <unsigned int Dim, FEFamily T>
void FE<Dim,T>::reinit(const Elem* elem,
                       const std::vector<Point>* const pts,
                       const std::vector<Real>* const weights)
{
  libmesh_assert(elem);

  // Try to avoid calling init_shape_functions
  // even when shapes_need_reinit
  bool cached_nodes_still_fit = false;

  // Initialize the shape functions at the user-specified
  // points
  if (pts != NULL)
    {
      // Set the type and p level for this element
      this->elem_type = elem->type();
      this->_p_level = elem->p_level();

      // Initialize the shape functions
      this->_fe_map->template init_reference_to_physical_map<Dim>(*pts, elem);
      this->init_shape_functions (*pts, elem);

      // The shape functions do not correspond to the qrule
      this->shapes_on_quadrature = false;
    }

  // If there are no user specified points, we use the
  // quadrature rule

  // update the type in accordance to the current cell
  // and reinit if the cell type has changed or (as in
  // the case of the hierarchics) the shape functions need
  // reinit, since they depend on the particular element shape
  else
    {
      libmesh_assert(this->qrule);
      this->qrule->init(elem->type(), elem->p_level());

      if(this->qrule->shapes_need_reinit())
        this->shapes_on_quadrature = false;

      if (this->elem_type != elem->type() ||
          this->_p_level != elem->p_level() ||
          !this->shapes_on_quadrature)
        {
          // Set the type and p level for this element
          this->elem_type = elem->type();
          this->_p_level = elem->p_level();
          // Initialize the shape functions
          this->_fe_map->template init_reference_to_physical_map<Dim>(this->qrule->get_points(), elem);
          this->init_shape_functions (this->qrule->get_points(), elem);

          if (this->shapes_need_reinit())
            {
              cached_nodes.resize(elem->n_nodes());
              for (unsigned int n = 0; n != elem->n_nodes(); ++n)
                {
                  cached_nodes[n] = elem->point(n);
                }
            }
        }
      else
        {
          // libmesh_assert_greater (elem->n_nodes(), 1);

          cached_nodes_still_fit = true;
          if (cached_nodes.size() != elem->n_nodes())
            cached_nodes_still_fit = false;
          else
            for (unsigned int n = 1; n < elem->n_nodes(); ++n)
              {
                if (!(elem->point(n) - elem->point(0)).relative_fuzzy_equals(
                      (cached_nodes[n] - cached_nodes[0]), 1e-13))
                  {
                    cached_nodes_still_fit = false;
                    break;
                  }
              }

          if (this->shapes_need_reinit() && !cached_nodes_still_fit)
            {
              this->_fe_map->template init_reference_to_physical_map<Dim>(this->qrule->get_points(), elem);
              this->init_shape_functions (this->qrule->get_points(), elem);
              cached_nodes.resize(elem->n_nodes());
              for (unsigned int n = 0; n != elem->n_nodes(); ++n)
                cached_nodes[n] = elem->point(n);
            }
        }

      // The shape functions correspond to the qrule
      this->shapes_on_quadrature = true;
    }

  // Compute the map for this element.  In the future we can specify
  // different types of maps
  if (pts != NULL)
    {
      if (weights != NULL)
        {
          this->_fe_map->compute_map (this->dim,*weights, elem);
        }
      else
        {
          std::vector<Real> dummy_weights (pts->size(), 1.);
          this->_fe_map->compute_map (this->dim,dummy_weights, elem);
        }
    }
  else
    {
      this->_fe_map->compute_map (this->dim,this->qrule->get_weights(), elem);
    }

  // Compute the shape functions and the derivatives at all of the
  // quadrature points.
  if (!cached_nodes_still_fit)
    {
      if (pts != NULL)
          this->compute_shape_functions (elem,*pts);
      else
        this->compute_shape_functions(elem,this->qrule->get_points());
    }
}



template <unsigned int Dim, FEFamily T>
void FE<Dim,T>::init_shape_functions(const std::vector<Point>& qp,
                                     const Elem* elem)
{
  libmesh_assert(elem);
  this->calculations_started = true;

  // If the user forgot to request anything, we'll be safe and
  // calculate everything:
#ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES
  if (!this->calculate_phi && !this->calculate_dphi && !this->calculate_d2phi 
      && !this->calculate_curl_phi && !this->calculate_div_phi)
    {
      this->calculate_phi = this->calculate_dphi = this->calculate_d2phi = this->calculate_dphiref = true;
      if( FEInterface::field_type(T) == TYPE_VECTOR )
        {
          this->calculate_curl_phi = true;
          this->calculate_div_phi  = true;
        }
    }
#else
  if (!this->calculate_phi && !this->calculate_dphi && !this->calculate_curl_phi && !this->calculate_div_phi)
    {
      this->calculate_phi = this->calculate_dphi = this->calculate_dphiref = true;
      if( FEInterface::field_type(T) == TYPE_VECTOR )
        {
          this->calculate_curl_phi = true;
          this->calculate_div_phi  = true;
        }
    }
#endif // LIBMESH_ENABLE_SECOND_DERIVATIVES

  // Start logging the shape function initialization
  START_LOG("init_shape_functions()", "FE");


  // The number of quadrature points.
  const unsigned int n_qp = libmesh_cast_int<unsigned int>(qp.size());

  // Number of shape functions in the finite element approximation
  // space.
  const unsigned int n_approx_shape_functions =
    this->n_shape_functions(this->get_type(),
                            this->get_order());

  // resize the vectors to hold current data
  // Phi are the shape functions used for the FE approximation
  // Phi_map are the shape functions used for the FE mapping
  if (this->calculate_phi)
    this->phi.resize     (n_approx_shape_functions);

  if (this->calculate_dphi)
    {
      this->dphi.resize    (n_approx_shape_functions);
      this->dphidx.resize  (n_approx_shape_functions);
      this->dphidy.resize  (n_approx_shape_functions);
      this->dphidz.resize  (n_approx_shape_functions);
    }

  if(this->calculate_dphiref)
    {
      if (Dim > 0)
        this->dphidxi.resize (n_approx_shape_functions);

      if (Dim > 1)
        this->dphideta.resize      (n_approx_shape_functions);

      if (Dim > 2)
        this->dphidzeta.resize     (n_approx_shape_functions);
    }
  
  if( this->calculate_curl_phi && (FEInterface::field_type(T) == TYPE_VECTOR) )
    this->curl_phi.resize(n_approx_shape_functions);

  if( this->calculate_div_phi && (FEInterface::field_type(T) == TYPE_VECTOR) )
    this->div_phi.resize(n_approx_shape_functions);

#ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES
  if (this->calculate_d2phi)
    {
      this->d2phi.resize     (n_approx_shape_functions);
      this->d2phidx2.resize  (n_approx_shape_functions);
      this->d2phidxdy.resize (n_approx_shape_functions);
      this->d2phidxdz.resize (n_approx_shape_functions);
      this->d2phidy2.resize  (n_approx_shape_functions);
      this->d2phidydz.resize (n_approx_shape_functions);
      this->d2phidz2.resize  (n_approx_shape_functions);

      if (Dim > 0)
        this->d2phidxi2.resize (n_approx_shape_functions);

      if (Dim > 1)
        {
          this->d2phidxideta.resize (n_approx_shape_functions);
          this->d2phideta2.resize   (n_approx_shape_functions);
        }
      if (Dim > 2)
        {
          this->d2phidxidzeta.resize  (n_approx_shape_functions);
          this->d2phidetadzeta.resize (n_approx_shape_functions);
          this->d2phidzeta2.resize    (n_approx_shape_functions);
        }
    }
#endif // ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES

  for (unsigned int i=0; i<n_approx_shape_functions; i++)
    {
      if (this->calculate_phi)
        this->phi[i].resize         (n_qp);
      if (this->calculate_dphi)
        {
          this->dphi[i].resize        (n_qp);
          this->dphidx[i].resize      (n_qp);
          this->dphidy[i].resize      (n_qp);
          this->dphidz[i].resize      (n_qp);
        }
      
      if(this->calculate_dphiref)
        {
          if (Dim > 0)
            this->dphidxi[i].resize(n_qp);

          if (Dim > 1)
            this->dphideta[i].resize(n_qp);

          if (Dim > 2)
            this->dphidzeta[i].resize(n_qp);
        }

      if(this->calculate_curl_phi && (FEInterface::field_type(T) == TYPE_VECTOR) )
        this->curl_phi[i].resize(n_qp);

      if(this->calculate_div_phi && (FEInterface::field_type(T) == TYPE_VECTOR) )
        this->div_phi[i].resize(n_qp);

#ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES
      if (this->calculate_d2phi)
        {
          this->d2phi[i].resize     (n_qp);
          this->d2phidx2[i].resize  (n_qp);
          this->d2phidxdy[i].resize (n_qp);
          this->d2phidxdz[i].resize (n_qp);
          this->d2phidy2[i].resize  (n_qp);
          this->d2phidydz[i].resize (n_qp);
          this->d2phidz2[i].resize  (n_qp);
          if (Dim > 0)
            this->d2phidxi2[i].resize (n_qp);
          if (Dim > 1)
            {
              this->d2phidxideta[i].resize (n_qp);
              this->d2phideta2[i].resize   (n_qp);
            }
          if (Dim > 2)
            {
              this->d2phidxidzeta[i].resize  (n_qp);
              this->d2phidetadzeta[i].resize (n_qp);
              this->d2phidzeta2[i].resize    (n_qp);
            }
        }
#endif // ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES
    }


#ifdef LIBMESH_ENABLE_INFINITE_ELEMENTS
  //------------------------------------------------------------
  // Initialize the data fields, which should only be used for infinite
  // elements, to some sensible values, so that using a FE with the
  // variational formulation of an InfFE, correct element matrices are
  // returned

 {
    this->weight.resize  (n_qp);
    this->dweight.resize (n_qp);
    this->dphase.resize  (n_qp);

    for (unsigned int p=0; p<n_qp; p++)
      {
        this->weight[p] = 1.;
        this->dweight[p].zero();
        this->dphase[p].zero();
      }

 }
#endif // ifdef LIBMESH_ENABLE_INFINITE_ELEMENTS

  switch (Dim)
    {

      //------------------------------------------------------------
      // 0D
    case 0:
      {
        break;
      }

      //------------------------------------------------------------
      // 1D
    case 1:
      {
        // Compute the value of the approximation shape function i at quadrature point p
        if (this->calculate_dphiref)
          for (unsigned int i=0; i<n_approx_shape_functions; i++)
            for (unsigned int p=0; p<n_qp; p++)
              this->dphidxi[i][p]  = FE<Dim,T>::shape_deriv (elem, this->fe_type.order, i, 0, qp[p]);
#ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES
        if (this->calculate_d2phi)
          for (unsigned int i=0; i<n_approx_shape_functions; i++)
            for (unsigned int p=0; p<n_qp; p++)
              this->d2phidxi2[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 0, qp[p]);
#endif // ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES

        break;
      }



      //------------------------------------------------------------
      // 2D
    case 2:
      {
        // Compute the value of the approximation shape function i at quadrature point p
        if (this->calculate_dphiref)
          for (unsigned int i=0; i<n_approx_shape_functions; i++)
            for (unsigned int p=0; p<n_qp; p++)
              {
                this->dphidxi[i][p]  = FE<Dim,T>::shape_deriv (elem, this->fe_type.order, i, 0, qp[p]);
                this->dphideta[i][p] = FE<Dim,T>::shape_deriv (elem, this->fe_type.order, i, 1, qp[p]);
              }
#ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES
        if (this->calculate_d2phi)
          for (unsigned int i=0; i<n_approx_shape_functions; i++)
            for (unsigned int p=0; p<n_qp; p++)
              {
                this->d2phidxi2[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 0, qp[p]);
                this->d2phidxideta[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 1, qp[p]);
                this->d2phideta2[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 2, qp[p]);
              }
#endif // ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES

        
        break;
      }



      //------------------------------------------------------------
      // 3D
    case 3:
      {
        // Compute the value of the approximation shape function i at quadrature point p
        if (this->calculate_dphiref)
          for (unsigned int i=0; i<n_approx_shape_functions; i++)
            for (unsigned int p=0; p<n_qp; p++)
              {
                this->dphidxi[i][p]   = FE<Dim,T>::shape_deriv (elem, this->fe_type.order, i, 0, qp[p]);
                this->dphideta[i][p]  = FE<Dim,T>::shape_deriv (elem, this->fe_type.order, i, 1, qp[p]);
                this->dphidzeta[i][p] = FE<Dim,T>::shape_deriv (elem, this->fe_type.order, i, 2, qp[p]);
              }
#ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES
        if (this->calculate_d2phi)
          for (unsigned int i=0; i<n_approx_shape_functions; i++)
            for (unsigned int p=0; p<n_qp; p++)
              {
                this->d2phidxi2[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 0, qp[p]);
                this->d2phidxideta[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 1, qp[p]);
                this->d2phideta2[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 2, qp[p]);
                this->d2phidxidzeta[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 3, qp[p]);
                this->d2phidetadzeta[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 4, qp[p]);
                this->d2phidzeta2[i][p] = FE<Dim,T>::shape_second_deriv (elem, this->fe_type.order, i, 5, qp[p]);
              }
#endif // ifdef LIBMESH_ENABLE_SECOND_DERIVATIVES

        break;
      }


    default:
      libmesh_error();
    }

  // Stop logging the shape function initialization
  STOP_LOG("init_shape_functions()", "FE");
}




#ifdef LIBMESH_ENABLE_INFINITE_ELEMENTS

template <unsigned int Dim, FEFamily T>
void FE<Dim,T>::init_base_shape_functions(const std::vector<Point>& qp,
                                          const Elem* e)
{
  // I don't understand infinite elements well enough to risk
  // calculating too little.  :-(  RHS
  this->calculate_phi = this->calculate_dphi = this->calculate_d2phi = true;

  this->elem_type = e->type();
  this->_fe_map->template init_reference_to_physical_map<Dim>(qp, e);
  init_shape_functions(qp, e);
}

#endif // LIBMESH_ENABLE_INFINITE_ELEMENTS



//--------------------------------------------------------------
// Explicit instantiations using macro from fe_macro.h

INSTANTIATE_FE(0);

INSTANTIATE_FE(1);

INSTANTIATE_FE(2);

INSTANTIATE_FE(3);


} // namespace libMesh

---

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Last modified: February 05 2013 19:54:46 UTC

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