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  title = {{\texttt{libMesh}: A C++ Library for Parallel Adaptive Mesh
              Refinement/Coarsening Simulations}},
  journal = {Engineering with Computers},
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  note = {\url{http://dx.doi.org/10.1007/s00366-006-0049-3}}
}

@phdthesis{Lee_dissertation,
  author = {K.~Lee},
  school = {Massachusetts Institute of Technology},
  title = {{Understanding new regimes for light-matter interactions}},
  note = {\url{http://dspace.mit.edu/handle/1721.1/66018}},
  month = jun,
  year = {2011}
}

@phdthesis{Nagler_dissertation,
  author = {L.~Nagler},
  school = {Graz University of Technology, Institute of Applied Mechanics},
  title = {{Simulation of sound transmission through poroelastic plate-like structures}},
  note = {\url{http://fmysql.tu-graz.ac.at/~karl/verlagspdf/nagler_buch_13052011.pdf}},
  month = feb,
  year = {2011}
}

@phdthesis{Nenning_Dissertation,
  author = {M.~Nenning},
  school = {Graz University of Technology, Institute of Applied Mechanics},
  title = {{Infinite Elements for Elasto- and Poroelastodynamics}},
  note = {\url{http://fmysql.tu-graz.ac.at/~karl/verlagspdf/buch_nenning_10112010.pdf}},
  month = aug,
  year = {2010}
}

@phdthesis{Petrolati_Dissertation,
  author = {E.~Petrolati},
  school = {Universit\`{a} Degli Studi Di Roma ``Tor Vergata''},
  title = {{Study and Optimization of Polariton LASERs}},
  note = {\url{http://art.torvergata.it/bitstream/2108/1116/1/FINALE.pdf}},
  month = dec,
  year = {2008}
}

@phdthesis{Stogner_Dissertation,
  author = {R.~H.~Stogner},
  school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  title = {{Parallel Adaptive C1 Macro-Elements for Nonlinear Thin Film and Non-Newtonian Flow Problems}},
  note = {\url{http://www.cfdlab.ae.utexas.edu/~roystgnr/
  dissertation/dissertation-stogner.pdf}},
  month = aug,
  year = {2008}
}

@phdthesis{Wang_Dissertation,
  author = {S.~Wang},
  school = {University of Illinois at Urbana-Champaign},
  title = {{Krylov subspace methods for topology optimization on adaptive meshes}},
  note = {\url{http://gradworks.umi.com/32/90/3290423.html}},
  month = may,
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}

@phdthesis{Peterson_Dissertation,
  author = {J.~W.~Peterson},
  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{Parallel Adaptive Finite Element Methods for Problems in Natural Convection}},
  note = {\url{http://www.cfdlab.ae.utexas.edu/~peterson/diss.pdf}},
  month = may,
  year = {2008}
}

@phdthesis{Knezevic_Dissertation,
  author = {D.~J.~Knezevic},
  school = {University of Oxford, Balliol College},
  title = {{Analysis and Implementation of Numerical Methods for Simulating Dilute Polymeric Fluids}},
  note = {\url{http://www.comlab.ox.ac.uk/files/1416/knezevic-thesis.pdf}},
  month = {Michaelmas Term},
  year = {2008}
}

@phdthesis{Kirk_Dissertation,
  author = {B.~S.~Kirk},
  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{Adaptive Finite Element Simulation of Flow and Transport Applications on Parallel Computers}},
  note = {\url{http://www.cfdlab.ae.utexas.edu/~benkirk/dissertation.pdf}},
  month = may,
  year = {2007}
}

@mastersthesis{Peterson_Thesis,
  author = {J.~W.~Peterson},
  type = {{Master's Report}},
  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{A Numerical Investigation of B\'{e}nard Convection in Small Aspect Ratio Containers}},
  note = {\url{http://www.cfdlab.ae.utexas.edu/~peterson/masters.pdf}},
  month = may,
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}

@inproceedings{Sopeju_2011,
  author = {O.~A.~Sopeju and M.~Burtscher and A.~Rane and J.~Browne},
  title = {{AutoSCOPE: Automatic suggestions for code optimizations using PerfExpert}},
  booktitle = {{Proceedings of the 2011 International Conference on Parallel and
                Distributed Processing Techniques and Applications (PDPTA'11)}},
  pages = {xx--yy},
  month = jul # {~18--21,},
  address = {Las Vegas, NV},
  year = {2011},
  note = {\url{http://www.cs.txstate.edu/~mb92/papers/pdpta11a.pdf}}
}

@article{Hussan_2011,
  author = {J.~R.~Hussan and P.~J.~Hunter and M.~L.~Trew},
  title = {{A clustering method for calculating membrane currents in cardiac electrical models}},
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  year = 2011,
  volume = online,
  pages = {1--14},
  note = {\url{http://dx.doi.org/10.1007/s13239-011-0070-6}}
}

@article{Bova_2011,
  author = {S.~W.~Bova and B.~S.~Kirk},
  title = {{On the preservation of total enthalpy in SUPG methods}},
  journal = {PREPRINT, AIAA Journal},
  year = 2011,
  note = {\url{http://dx.doi.org}}
}

@article{Huynh_2011,
  author = {D.~B.~P.~Huynh and D.~J.~Knezevic and A.~T.~Patera},
  title = {{A static condensation reduced basis element method:  
approximation and a posteriori error estimation}},
  journal = {PREPRINT, Mathematical Modelling and Numerical Analysis},
  year = 2011,
  note = {\url{http://augustine.mit.edu/methodology/papers/HKP_RBcomponents_M2AN.pdf}}
}

@article{Oliveira_2011,
  author = {S.~Oliveira and A.-M.~Toader and P.~Vieira},
  title = {{Damage identification in a concrete dam by fitting measured modal parameters}},
  journal = {PREPRINT},
  year = 2011,
  note = {\url{http://cmaf.ptmat.fc.ul.pt/arquivo/docs/preprints/pdf/2011/artigo_parametros_110514.pdf}}
}

@article{Camata_2011,
  author = {J.~J.~Camata and A.~L.~Rossa and A.~M.~P.~Valli and L.~Catabriga and G.~F.~Carey and A.~L.~G.~A.~Coutinho},
  title = {{Reordering and incomplete preconditioning in serial and parallel AMR/C flow solutions}},
  journal = {PREPRINT, International Journal for Numerical Methods in Fluids},
  year = 2011,
  pages = {xx--xx},
  note = {\url{http://dx.doi.org/10.1002/fld.2614}, \url{http://onlinelibrary.wiley.com/doi/10.1002/fld.2614/abstract}}
}

@article{Eftang_2010b,
  author = {J.~L.~Eftang and D.~B.~P.~Huynh and D.~J.~Knezevic and A.~T.~Patera},
  title = {{A two-step certified reduced basis method}},
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  month = oct,
  note = {\url{http://dx.doi.org/10.1007/s10915-011-9494-2}}
}

@article{Griffith_2010,
  author = {B.~E.~Griffith and X.~Luo},
  title = {{Immersed boundary method with finite element elasticity}},
  journal = {SUBMITTED},
  year = 2010,
  month = oct,
  note = {\url{http://www.cims.nyu.edu/~griffith/docs/griffith_ibfem_sub.pdf}}
}

@article{Knezevic_2010b,
  author = {D.~J.~Knezevic and N.~C.~Nguyen and A.~T.~Patera},
  title = {{Reduced basis approximation and a posteriori 
              error estimation for the parametrized unsteady 
              Boussinesq equations}},
  journal = {PREPRINT, Accepted in Mathematical Models and Methods in Applied Sciences},
  month = aug,
  year = 2010,
  note = {\url{http://augustine.mit.edu/methodology/
     papers/atp_M3AS_preprint_Sep2010.pdf}}
}

@article{Eftang_2010a,
  author = {J.~L.~Eftang and D.~J.~Knezevic and A.~T.~Patera},
  title = {{An $hp$ Certified Reduced Basis Method for Parameterized Parabolic Partial Differential Equations}},
  journal = {PREPRINT, Mathematical and Computer Modelling of Dynamical Systems},
  year = {revised July 2010},
  note = {\url{http://augustine.mit.edu/methodology/
     papers/atp_MCMDS_revised_Jul2010.pdf}}
}

@article{Akkoyun_2012,
  author = {S.~Akkoyun and others},
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  journal = {Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
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  month = mar,
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  note = {\url{http://dx.doi.org/10.1016/j.nima.2011.11.081}}
}

@article{Mahadevan_2012,
  author = {V.~S.~Mahadevan and J.~C.~Ragusa and V.~A.~Mousseau},
  title = {{A verification exercise in multiphysics simulations for coupled reactor physics calculations}},
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  note = {\url{http://dx.doi.org/10.1016/j.pnucene.2011.10.013}}
}

@article{Huynh_2012,
  author = {D.~B.~P.~Huynh and D.~J.~Knezevic and A.~T.~Patera},
  title = {Certified Reduced Basis Model Validation: a Frequentistic Uncertainty Framework},
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  year = {2012},
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}

@article{Vetter_2011,
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}

@techreport{Gerner_2011,
  author = {A.-L.~Gerner and K.~Veroy},
  title = {{Certified reduced basis method for parameterized saddle point problems}},
  institution = {Aachen Institute for Advanced Study in Computational Engineering Science},
  day = {4},
  month = nov,
  year = {2011},
  number = {AICES-2011/11-01},
  note = {\url{http://www.aices.rwth-aachen.de:8080/aices/preprint/documents/AICES-2011-11-01.pdf}}
}

@article{Bordas_2011,
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  title = {{Rabbit-specific ventricular model of cardiac electrophysiological function including specialized conduction system}},
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  year = 2011,
  volume = 107,
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  month = oct,
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  note = {\url{http://dx.doi.org/10.1016/j.pbiomolbio.2011.05.002}}
}

@inproceedings{Corsini_2011b,
  author = {A.~Corsini and F.~Rispoli and E.~Tuccimei},
  title = {{Development of air turbines for small power OWC plants}},
  booktitle = {{Proceedings of the 9th European Wave and Tidal Energy Conference (EWTEC)}},
  month = sep # {~5--9},
  year = {2011},
  note = {\url{https://www.see.ed.ac.uk/~shs/Tidal%20Stream/EWTEC%202011%20full/EWTEC_CD/papers/322.pdf}}
}

@article{Vavourakis_2011,
  author = {V.~Vavourakis and Y.~Papaharilaou and J.~A.~Ekaterinaris},
  title = {{Coupled fluid-structure interaction hemodynamics in a zero-pressure state corrected arterial geometry}},
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  pages = {2453--2460},
  year = 2011,
  note = {\url{http://dx.doi.org/10.1016/j.jbiomech.2011.06.024}}
}

@article{Berrone_2011,
  author = {S.~Berrone and M.~Verani},
  title = {{A new marking strategy for the adaptive finite element
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  journal = {Optimization Methods and Software, Special Issue: 
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@inproceedings{Widmer_2011b,
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  title = {{A comparison of computational methods to determine the permeability of vertebral trabecular bone}},
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@techreport{Brummelen_2011b,
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  title = {{Flux evaluation in primal and dual boundary-coupled problems}},
  institution = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  month = jul,
  year = 2011,
  number = {11-22},
  note = {\url{http://www.ices.utexas.edu/media/reports/2011/1122.pdf}}
}

@techreport{Brummelen_2011,
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  title = {{Flux evaluation in primal and dual boundary-coupled problems}},
  institution = {Centre for Analysis, Scientific computing and Applications (CASA), Dept.\ of Mathematics and Computer Science, Eindhoven University of Technology},
  month = jul,
  year = 2011,
  number = {11-41},
  note = {\url{http://www.win.tue.nl/analysis/reports/rana11-41.pdf}}
}

@article{Carey_2011,
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  year = {2011}
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@article{Arbree_2011,
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  title = {{Heterogeneous Subsurface Scattering Using the Finite Element Method}},
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@inproceedings{Vazquez_2011,
  author = {P.~A.~Vazquez and A.~Castellanos},
  booktitle = {{2011 IEEE International Conference on Dielectric Liquids (ICDL)}},
  title = {{Stability analysis of the 3D electroconvective charged flow between parallel plates using the Particle-In-Cell method}},
  year = {2011},
  month = jun # {~26--30,},
  pages = {1--4},
  note = {\url{http://dx.doi.org/10.1109/ICDL.2011.6015467}}
}

@techreport{Gunther_2011,
  author = {A.~G\"{u}nther and H.~Lamecker and M.~Weiser},
  title = {{Direct LDDMM of discrete currents with adaptive finite elements}},
  institution = {Konrad-Zuse-Zentrum f\"{u}r Informationstechnik Berlin (ZIB)},
  day = 14,
  month = jun,
  year = 2011,
  number = {11-22 (2011)},
  note = {\url{http://vs24.kobv.de/opus4-zib/files/1309/ZIB-Report11-22_GLW-LDDMMwithAFEM.pdf}}
}

@article{Peterson_2010b,
  author = {J.~W.~Peterson and G.~F.~Carey},
  title = {{Parallel adaptive solution of coupled Rayleigh--B\'{e}nard--Marangoni
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  journal = {International Journal for Numerical Methods in Fluids},
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  pages = {428--451},
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  year = {2011},
  note = {\url{http://dx.doi.org/10.1002/fld.2264}}
}

@article{Feng_2011,
  author = {Y.~Feng and D.~Fuentes},
  title = {{Real-time predictive surgical control for cancer treatment using laser ablation}},
  journal = {IEEE Signal Processing Magazine},
  year = 2011,
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@article{AufDerMaur_2011,
  author = {Auf der Maur, M. and Penazzi, G. and Romano, G. and Sacconi, F. and Pecchia, A. and Di Carlo, A.},
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  title = {The Multiscale Paradigm in Electronic Device Simulation},
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  author = {F.~E.~Curtis and J.~Huber and O.~Schenk and A.~W\"{a}chter},
  title = {{On the implementation of an interior-point algorithm for nonlinear
              optimization with inexact step computations}},
  institution = {IBM Research Division},
  day = {13},
  month = apr,
  year = 2011,
  number = {RC25143 (W1104-052)},
  note = {\url{https://domino.research.ibm.com/library/cyberdig.nsf/
papers/B817B35E8652877A85257873005A6F38/\$File/rc25143.pdf}}
}

@article{Huynh_2010,
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  title = {{High-Fidelity Real-Time Simulation on Deployed Platforms}},
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  year = {2011},
  month = apr,
  volume = 43,
  number = 1,
  pages = {74--81},
  note = {Special issue dedicated to Prof. Michel Deville, 
          Symposium on High Accuracy Flow Simulations (HAFS),
    \'{E}cole Polytechnique F\'{e}d\'{e}rale de Lausanne, February 15--16, 2010,
DOI:~\url{http://dx.doi.org/10.1016/j.compfluid.2010.07.007}    }
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@article{Knezevic_2011,
  author = {D.~J.~Knezevic and J.~W.~Peterson},
  title = {{A High-Performance Parallel Implementation of the Certified Reduced Basis Method}},
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  year = {2011},
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@article{Botti_2011,
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  title = {{A pressure-correction scheme for convection-dominated incompressible flows
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@article{Knezevic_2011b,
  author = {D.~J.~Knezevic and N.~C.~Nguyen and A.~T.~Patera},
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              Boussinesq equations}},
  journal = {Mathematical Models and Methods in Applied Sciences},
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@article{Kroger_2011,
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  title = {{Numerical experiments on existence and non-uniqueness of solutions of the thermistor problem with Helmholtz term}},
  publisher = {AIP},
  year = {2011},
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  number = {1},
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  note = {\url{http://dx.doi.org/10.1063/1.3663454}}
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@article{Eftang_2011,
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@article{Steiger_2011,
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@article{Fuentes_2011,
  author = {D.~Fuentes and C.~Walker and A.~Elliott and A.~Shetty
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@article{widmer_2011,
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  title = {A Mixed Boundary Representation to Simulate the Displacement of a Biofluid by a Biomaterial in Porous Media},
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@incollection{Hilscher_2011,
  author = {P.~P. Hilscher and K.~Imadera and J.~Li and Y.~Kishimoto},
  affiliation = {Department of Fundamental Energy Science, 
                  Graduate School of Energy Science, Kyoto University, 
                  Gokasho, Uji, Kyoto, 611-0011 Japan},
  title = {Towards Gyrokinetic Simulations of Multi-Scale Micro-Turbulence in Tokamaks},
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  series = {Green Energy and Technology},
  editor = {Yao, Takeshi},
  publisher = {Springer Japan},
  pages = {239--244},
  note = {\url{http://dx.doi.org/10.1007/978-4-431-53910-0_31}},
  year = {2011}
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@article{Corsini_2011,
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  title = {{Stabilized finite element computation of NOx emission in aero-engine combustors}},
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  booktitle = {2010 International Conference for High Performance Computing, Networking, Storage and Analysis (SC)},
  title = {{PerfExpert: An easy-to-use performance diagnosis tool for HPC applications}},
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  note = {\url{http://dx.doi.org/10.1002/fld.2195}}
}

@article{Fuentes_2010b,
  author = {D.~Fuentes and R.~Cardan and R.~J.~Stafford and J.~Yung and G.~D.~Dodd~III and Y.~Feng},
  title = {High-fidelity Computer Models for Prospective Treatment Planning
         of Radiofrequency Ablation with In Vitro Experimental Correlation},
  journal = {Journal of Vascular and Interventional Radiology},
  volume = 21,
  number = 11,
  month = nov,
  year = {2010},
  pages = {1725--1732},
  note = {\url{http://dx.doi.org/10.1016/j.jvir.2010.07.022}}
}

@article{Brown_2010,
  author = {J.~Brown},
  title = {{Efficient Nonlinear Solvers for Nodal High-Order Finite Elements in 3D}},
  journal = {Journal of Scientific Computing},
  year = 2010,
  volume = 45,
  issue = {1--3},
  month = oct,
  pages = {48--63},
  note = {\url{http://dx.doi.org/10.1007/s10915-010-9396-8}}
}

@article{Wang_2010,
  author = {S.~Wang and E.~De~Sturler and G.~H.~Paulino},
  title = {{Dynamic adaptive mesh refinement for topology optimization}},
  month = sep # {~25,},
  year = {2010},
  note = {\url{http://arxiv.org/abs/1009.4975}}
}

@inproceedings{Olivera_2010,
  author = {S.~Oliveira and A.-M.~Toader and P.~Vieira},
  title = {Finding the elastic coefficients of a damaged zone in
  a concrete dam using material optimization to fit measured modal parameters},
  booktitle = {{Proceedings of the 2nd International Conference on
                 Engineering Optimization}},
  month = sep # {~6--9,},
  address = {Lisbon, Portugal},
  year = {2010},
  note = {\url{http://lemac1.dem.ist.utl.pt/engopt2010/Book_and_CD/
  Papers_CD_Final_Version/pdf/12/01122-01.pdf}}
}

@techreport{Ragusa_2010,
  author = {J.~Ragusa and A.~Siegel and J.-M.~Ruggieri},
  title = {{Neutronic/Thermalhydraulic Coupling Techniques for Sodium Cooled Fast Reactor Simulations}},
  institution = {Department of Energy},
  day = 28,
  month = sep,
  year = {2010},
  number = {14837},
  note = {\url{http://dx.doi.org/10.2172/992636}}
}

@article{Lu_2010,
  author = {Y.~Lu and B.~Zhu and H.~Shen and J.~C.~Rasmussen
             and G.~Wang and E.~M.~Sevick-Muraca},
  title = {{A parallel adaptive finite element simplified
              spherical harmonics approximation solver for
	      frequency domain fluorescence molecular imaging}},
  journal = {Physics in Medicine and Biology},
  year = 2010,
  volume = 55,
  number = 16,
  month = aug,
  pages = {4625--4645},
  note = {\url{http://dx.doi.org/10.1088/0031-9155/55/16/002}}
}

@article{Pereira_2010,
  author = {F.~H.~Pereira and S.~I.~Nabeta},
  title = {{Wavelet-based algebraic multigrid method using the lifting technique}},
  journal = {Journal of Microwaves, Optoelectronics, and Electromagnetic Applications},
  year = 2010,
  volume = 9,
  number = 1,
  pages = {1--9},
  note = {\url{http://www.sel.eesc.usp.br/jmo/issues/
     vol_9/v9_n1/v9_n1_paper_pdf/regular/v9n1a1.pdf}},
  month = jun
}

@article{Kirk_2010a,
  author = {B.~S.~Kirk and G.~F.~Carey},
  title = {{Validation of Fully Implicit, Parallel Finite Element Simulations of Laminar Hypersonic Flows}},
  journal = {AIAA Journal},
  year = 2010,
  month = jun,
  volume = 48,
  number = 6,
  pages = {1025--1036},
  note = {\url{http://dx.doi.org/10.2514/1.40860}}
}

@techreport{Pecchia_2010,
  author = {A.~Pecchia},
  title = {{Transport at the nanoscale: integration of micro-macro
                  scales for electrothermal device simulations}},
  institution = {University of Rome, ``Tor Vergata''},
  day = 27,
  month = may,
  year = {2010},
  number = {A029035, Grant No: FA8655-08-1-3017},
  note = {\url{http://www.dtic.mil/cgi-bin/GetTRDoc?
                      Location=U2&doc=GetTRDoc.pdf&AD=ADA530920}, \url{http://dodreports.com/pdf/ada530920.pdf}}
}

@article{Nagler_2010,
  author = {L.~Nagler and M.~Schanz},
  title = {{An extendable poroelastic plate formulation in dynamics}},
  journal = {Archive of Applied Mechanics},
  year = 2010,
  month = may,
  volume = 80,
  issue = 10,
  month = oct,
  pages = {1177--1195},
  note = {\url{http://dx.doi.org/10.1007/s00419-010-0429-4}}
}

@article{Fuentes_2010a,
  author = {D.~Fuentes and Y.~Feng and A.~Elliott and A.~Shetty and
   R.~J.~McNichols and J.~T.~Oden and R.~J.~Stafford},
  title = {{Adaptive Real-Time Bioheat Transfer Models for
   Computer Driven MR-guided Laser Induced Thermal Therapy}},
  journal = {{IEEE Trans. Biomed. Eng.}},
  year = {2010},
  volume = {57},
  number = {5},
  month = may,
  pages = {1024--1030},
  note = {\url{http://www.ncbi.nlm.nih.gov/pubmed/20142153}}
}

@article{Berrone_2010a,
  author = {S.~Berrone},
  title = {{Skipping transition conditions in a posteriori error
estimates for finite element discretizations of parabolic equations}},
  journal = {Mathematical Modelling and Numerical Analysis (M2AN)},
  month = may,
  year = 2010,
  volume = 44,
  number = 3,
  pages = {455--484},
  note = {\url{http://dx.doi.org/10.1051/m2an/2010009}}
}

@article{Zhu_2010,
  author = {Y.~Zhu and X.~Y.~Luo and R.~W.~Ogden},
  title = {{Nonlinear axisymmetric deformations of an
              elastic tube under external pressure}},
  journal = {European Journal of Mechanics - A/Solids},
  year = 2010,
  volume = 29,
  number = 2,
  month = {March--April},
  pages = {216--229},
  note = {\url{http://dx.doi.org/10.1016/j.euromechsol.2009.10.004}}
}

@techreport{Burtscher_2010,
  author = {M.~Burtscher and B.~Kim and J.~Diamond and J.~McCalpin and L.~Koesterke and J.~Browne},
  title = {{PerfExpert:  An automated HPC performance measurement and analysis tool with optimization recommendations}},
  institution = {Institute for Computational Engineering and Sciences (ICES)},
  month = feb,
  year = 2010,
  number = {10-04},
  note = {\url{http://www.ices.utexas.edu/media/reports/2010/1004.pdf}}
}

@inproceedings{Podgorney_2010,
  author = {R.~Podgorney and H.~Huang and D.~Gaston},
  title = {{Massively parallel fully coupled implicit modeling of coupled
                 thermal-hydrological-mechanical processes for enhanced geothermal
		 system reservoirs}},
  booktitle = {{Proceedings of the 35th Workshop on Geothermal Reservoir Engineering}},
  publisher = {Stanford University},
  month = feb,
  year = {2010},
  note = {\url{http://pangea.stanford.edu/ERE/pdf/IGAstandard/SGW/2010/podgorne.pdf}}
}

@article{Rossa_2010,
  author = {A.~L.~Rossa and J.~J.~Camata and A.~L.~G.~A.~Coutinho},
  title = {{Hourglass control for the stabilized finite element solution
of coupled incompressible viscous flows and heat transfer}},
  journal = {Mec\'{a}nica Computacional -- High Performance Computing in Computational Mechanics (B)},
  year = 2010,
  volume = {XXIX},
  number = 31,
  pages = {3169--3184},
  note = {\url{http://www.amcaonline.org.ar/ojs/index.php/mc/article/view/3225}}
}

@article{Knezevic_2010a,
  author = {D.~J.~Knezevic and A.~T.~Patera},
  title = {{A certified reduced basis method for the 
              Fokker-Planck equation of dilute polymeric fluids: 
              FENE dumbbells in extensional flow}},
  journal = {SIAM Journal on Scientific Computing},
  year = 2010,
  volume = 32,
  number = 2,
  pages = {793--817},
  note = {\url{http://dx.doi.org/10.1137/090759239}}
}

@article{Zhengyong_2010,
  author = {Z.~Ren and J.~Tang},
  title = {{3D direct current resistivity modeling with
              unstructured mesh by adaptive finite-element method}},
  journal = {Geophysics},
  year = 2010,
  volume = 1,
  number = 75,
  pages = {H7--H17},
  note = {\url{http://dx.doi.org/10.1190/1.3298690}}
}

@article{Carey_2010,
  author = {G.~F.~Carey and D.~J.~Knezevic},
  title = {{Multiscale and hysteresis effects in vortex
              pattern simulations for Ginzburg-Landau problems}},
  journal = {International Journal for Numerical Methods in Engineering},
  year = 2010,
  volume = 81,
  number = 7,
  pages = {866--891},
  note = {\url{http://dx.doi.org/10.1002/nme.2714}}
}

@article{Peterson_2010,
  author = {J.~W.~Peterson and G.~F.~Carey and B.~T.~Murray},
  title = {{Multi-Resolution Simulation of Double-Diffusive 
              Convection in Porous Media}},
  journal = {International Journal of Numerical Methods for Heat \& Fluid Flow},
  volume = 20,
  number = 1,
  year = {2010},
  pages = {37--65},
  note = {\url{http://dx.doi.org/10.1108/09615531011008118}}
}

@article{Botti_2010,
  author = {L.~Botti and M.~Piccinelli and B.~Ene-Iordache and A.~Remuzzi and L.~Antiga},
  title = {{An adaptive mesh refinement solver for large-scale simulation of biological flows}},
  journal = {International Journal for Numerical Methods in Biomedical Engineering},
  year = 2010,
  volume = 26,
  number = 1,
  pages = {86--100},
  note = {\url{http://dx.doi.org/10.1002/cnm.1257}}
}

@article{Prouet_2009,
  author = {P.~Prouzet and M.~Odunlami and E.~Duquesne and A.~Boussouar},
  title = {{Analysis and visualization of the glass
             eel behavior (Anguilla anguilla) in the Adour estuary
             and estimate of its upstream migration speed}},
  note = {\url{http://dx.doi.org/10.1051/alr/2009041}},
  journal = {Aquatic Living Resources},
  year = 2009,
  volume = 22,
  number = 4,
  pages = {525--534},
  month = dec
}

@article{Class_2009,
  author = {H.~Class and others},
  title = {{A benchmark study on problems related to CO2 storage in geologic formations}},
  journal = {Computational Geosciences},
  year = 2009,
  volume = 13,
  number = 4,
  pages = {409--434},
  month = dec,
  note = {\url{http://dx.doi.org/10.1007/s10596-009-9146-x}}
}

@techreport{Barbarosie_2009,
  author = {C.~Barbarosie and A.-M.~Toader},
  title = {{Optimization of bodies with locally periodic 
                  microstructure}},
  institution = {Centro de Matem\'{a}tica e Aplica\c{c}\~{o}es Fundamentais (CMAF)},
  number = {Pre-2009-021},
  day = {2},
  month = dec,
  year = {2009},
  note = {\url{http://cmaf.ptmat.fc.ul.pt/arquivo/docs/pre-2009-021.pdf}}
}

@article{Kirk_2009c,
  author = {B.~S.~Kirk and G.~F.~Carey},
  title = {{A parallel, adaptive finite element scheme for
              modeling chemotactic biological systems}},
  journal = {Communications in Numerical Methods in Engineering},
  volume = {25},
  number = {12},
  pages = {1162--1185},
  month = dec,
  year = {2009},
  note = {\url{http://dx.doi.org/10.1002/cnm.1173}}
}

@article{Knezevic_2009d,
  author = {D.~J.~Knezevic and E.~S\"{u}li},
  title = {{A heterogeneous alternating-direction method
            for a micro-macro dilute polymeric fluid model}},
  note = {\url{http://dx.doi.org/10.1051/m2an/2009034}},
  journal = {European Series in Applied and Industrial Mathematics:
             Mathematical Modelling and Numerical Analysis},
  year = 2009,
  volume = 43,
  number = 6,
  pages = {1117--1156},
  month = nov
}

@inproceedings{Antiga_2009,
  author = {L. Antiga and R. N. Planken and K. Van Canneyt and
                L. Botti and A. Caroli and B. Ene-Iordache and
                J. Tordoir and P. Verdonck and A. Remuzzi},
  title = {{Non-linear resistance associated to complex geometry
                 at high flow rates in vascular access for hemodialysis}},
  booktitle = {{World Congress on Medical Physics and Biomedical Engineering}},
  editor = {Olaf D\"{o}ssel and Wolfgang C. Schlegel},
  pages = {543--546},
  publisher = {Springer Berlin Heidelberg},
  month = sep # {~7--12,},
  address = {Munich, Germany},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1007/978-3-642-03885-3}}
}

@techreport{Barone_2009b,
  author = {M.~F.~Barone and I.~Kalashnikova and M.~R.~Brake and D.~J.~Segalman},
  title = {{Reduced order modeling of fluid/structure interaction}},
  institution = {Sandia National Laboratories},
  month = sep,
  year = {2009},
  number = {SAND2009-7189},
  note = {\url{http://www.stanford.edu/~irinak/rom_ldrd_sand.pdf}}
}

@article{Lu_2009b,
  author = {Y.~Lu and A.~F.~Chatziioannou},
  title = {{A parallel adaptive finite element method for the
              simulation of photon migration with the radiative-transfer-based model}},
  journal = {Communications in Numerical Methods in Engineering},
  month = jun,
  year = 2009,
  volume = 25,
  number = 6,
  pages = {751--770},
  note = {\url{http://dx.doi.org/10.1002/cnm.1167}}
}

@inproceedings{AufderMaur_2009,
  author = {M.~{Auf der Maur} and M.~Povolotskyi and F.~Sacconi and
                G.~Romano and G.~Penazzi and A.~Pecchia and A.~{Di Carlo}},
  title = {{Multiscale-multiphysics simulation of nanostructured devices:
                 the TiberCAD project}},
  booktitle = {{13th International Workshop on Computational Electronics (IWCE '09)}},
  publisher = {Institute of Electrical and Electronic Engineers (IEEE)},
  month = may # {~27--29,},
  year = {2009},
  note = {\url{http://ieeexplore.ieee.org/iel5/5091069/5091070/05091126.pdf}}
}

@conference{Gaston_2009c,
  author = {D.~Gaston and G.~Hansen and C.~Newman},
  title = {{MOOSE: A parallel computational framework for coupled systems of nonlinear equations}},
  booktitle = {International Conference on Mathematics, Computational
               Methods \& Reactor Physics (M\&C 2009)},
  address = {Saratoga Springs, New York},
  month = may # {~7--9,},
  year = {2009},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/4336141.pdf}}
}

@conference{Park_2009,
  author = {H.~Park and D.~Gaston and S.~Kadioglu and D.~Knoll and R.~Martineau and W.~Taitano and D.~Lebrun-Grandi\'{e}},
  title = {Tightly coupled multiphysics simulations for pebble bed reactors},
  booktitle = {International Conference on Mathematics, Computational
               Methods \& Reactor Physics (M\&C 2009)},
  address = {Saratoga Springs, New York},
  month = may # {~7--9,},
  year = {2009},
  note = {\url{http://mathematicsandcomputation.freezoka.net/MC09/pdfs/201237.pdf}}
}

@conference{Mahadevan_2009,
  author = {V.~S.~Mahadevan and J.~C.~Ragusa and V.~Mousseau},
  title = {Verification of Multiphysics software: Space and time
               convergence studies for nonlinearly coupled applications},
  booktitle = {International Conference on Mathematics, Computational
               Methods \& Reactor Physics (M\&C 2009)},
  address = {Saratoga Springs, New York},
  month = may # {~7--9,},
  year = {2009},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/4247162.pdf}}
}

@article{Barone_2009,
  author = {M.~F.~Barone and I.~Kalashnikova and D.~J.~Segalman and H.~K.~Thornquist},
  title = {{Stable Galerkin reduced order models for linearized compressible flow}},
  journal = {Journal of Computational Physics},
  volume = {228},
  number = {6},
  pages = {1932--1946},
  year = {2009},
  month = apr,
  issn = {0021-9991},
  note = {\url{http://dx.doi.org/10.1016/j.jcp.2008.11.015}}
}

@techreport{Polidori_2009,
  author = {M.~Polidori},
  title = {{Set Up and Preliminary Assessment of a 3D Numerical Model 
                  for the Thermo-Fluid Dynamics Analysis of an Open Square 
                  Lattice Core of a Lead Cooled Reactor}},
  institution = {Ente per le Nuove tecnologie, l'Energia e l'Ambiente (ENEA)},
  number = {RSE/2009/84},
  year = {2009},
  month = mar,
  note = {\url{http://www.enea.it/enea_paese/sistema_elettrico/
  Nucleare_fissione/Reattori_Innovativi/RSE84.pdf}}
}

@article{S_Lu_2009,
  author = {S.~Lu and others},
  title = {{Multiscale Modeling in Rodent Ventricular Myocytes}},
  journal = {IEEE Engineering in Medicine and Biology Magazine},
  year = 2009,
  month = mar,
  volume = 28,
  number = 2,
  pages = {46--57},
  note = {\url{http://www.ncbi.nlm.nih.gov/pubmed/19349251}}
}

@article{Abukhdeir_2009,
  author = {N.~M.~Abukhdeir and A.~D.~Rey},
  title = {{Shape-dynamic growth, structure, and elasticity of homogeneously 
              oriented spherulites in an isotropic/smectic-A mesophase transition}},
  journal = {Liquid Crystals},
  year = 2009,
  volume = 36,
  number = {10--11},
  pages = {1125--1137},
  note = {\url{http://dx.doi.org/10.1080/02678290902878754}}
}

@article{Blome_2009,
  author = {M.~Blome and H.~R.~Maurer and K.~Schmidt},
  title = {{Advances on 3D geoelectric forward solver techniques}},
  journal = {Geophysical Journal International},
  year = 2009,
  volume = 176,
  number = 3,
  pages = {740--752},
  note = {\url{http:dx.doi.org/10.1111/j.1365-246X.2008.04006.x}}
}

@article{AufderMaur_2009b,
  author = {M.~{Auf der Maur} and M.~Povolotskyi and F.~Sacconi and
               A.~Pecchia and G.~Romano and G.~Penazzi and A.~{Di Carlo}},
  title = {{TiberCAD: towards multiscale simulation of optoelectronic devices}},
  pages = {1077--1083},
  year = 2009,
  journal = {Optical and Quantum Electronics},
  volume = {40},
  number = {14},
  note = {\url{http://dx.doi.org/10.1007/s11082-009-9272-7}}
}

@incollection{Knezevic_2009,
  author = {D.~J.~Knezevic and E.~S\"{u}li},
  title = {{A Deterministic Multiscale Approach
                for Simulating Dilute Polymeric Fluids}},
  pages = {23--38},
  year = 2009,
  publisher = {Springer},
  address = {Berlin Heidelberg},
  booktitle = {Lecture Notes in Computational Science and Engineering,
               BAIL 2008 - Boundary and Interior Layers},
  volume = {69},
  note = {\url{http://dx.doi.org/10.1007/978-3-642-00605-0}}
}

@article{Lu_2009,
  author = {Y.~Lu and H.~B.~Machado and A.~Douraghy
             and D.~Stout and H.~Herschman and
             A.~F.~Chatziioannou},
  title = {Experimental bioluminescence tomography with fully
             parallel radiative-transfer-based reconstruction framework},
  journal = {Optics Express},
  number = {19},
  pages = {16681--16695},
  volume = {17},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1364/OE.17.016681}}
}

@article{Xu_2009,
  author = {D.~Xu and J.~Stare and A.~L.~Cooksy},
  title = {Solving the vibrational {S}chr\"{o}dinger equation
             on an arbitrary multidimensional potential energy
	     surface by the finite element method},
  journal = {Computer Physics Communications},
  volume = {180},
  number = {11},
  pages = {2079--2094},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1016/j.cpc.2009.06.010}}
}

@article{Gaston_2009b,
  author = {D.~Gaston and C.~Newman and G.~Hansen and D.~Lebrun-Grandi\'{e}},
  title = {{MOOSE}: A parallel computational framework for coupled
             systems of nonlinear equations},
  journal = {Nuclear Engineering and Design},
  volume = {239},
  number = {10},
  pages = {1768--1778},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2009.05.021}}
}

@article{Jones_2009,
  author = {I.~A.~Jones and W.~Ruijter and A.~C.~Long},
  title = {A novel tetrahedral element for static and dynamic analysis of laminated composites},
  journal = {Journal of Physics: Conference Series},
  volume = {181},
  pages = {012042 (8pp)},
  note = {\url{http://dx.doi.org/10.1088/1742-6596/181/1/012042}},
  year = {2009}
}

@article{Gaston_2009,
  author = {D.~Gaston and G.~Hansen and S.~Kadioglu and D.~A.~Knoll
            and C.~Newman and H.~Park and C.~Permann and W.~Taitano},
  title = {Parallel multiphysics algorithms and software for computational nuclear engineering},
  journal = {Journal of Physics: Conference Series},
  volume = {180},
  pages = {012012 (10pp)},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1088/1742-6596/180/1/012012}}
}

@article{Luethi2009,
  author = {M.~P.~L{\"u}thi},
  title = {Transient response of idealized glaciers to climate variations},
  journal = {Journal of Glaciology},
  year = 2009,
  number = 193,
  volume = 55,
  pages = {918--930},
  note = {\url{http://dx.doi.org/10.3189/002214309790152519}}
}

@article{Valli_2009,
  author = {A. M. P. Valli and R. N. Elias and G. F. Carey and A. L. G. A. Coutinho},
  title = {{PID adaptive control of incremental and arclength continuation in nonlinear applications}},
  journal = {International Journal for Numerical Methods in Fluids},
  year = 2009,
  volume = {61},
  number = {11},
  pages = {1181--1200},
  note = {\url{http://dx.doi.org/10.1002/fld.1998}}
}

@article{Biermann_2009,
  author = {J.~Biermann and O.~von Estorff and S.~Petersen and C.~Wenterodt},
  title = {{Higher order finite and infinite elements for the solution of Helmholtz problems}},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  volume = {198},
  number = {13--14},
  pages = {1171--1188},
  year = {2009},
  issn = {0045-7825},
  note = {\url{http://dx.doi.org/10.1016/j.cma.2008.11.009}}
}

@article{Kirk_2009,
  author = {B.~S.~Kirk},
  title = {{Multidimensional Assessment of Modeling Error in Typical
              High-Speed Wind-Tunnel Heat-Transfer Data-Reduction Schemes}},
  journal = {AIAA Journal of Thermophysics and Heat Transfer},
  year = 2009,
  month = jan,
  volume = 23,
  number = 1,
  pages = {186--191},
  note = {\url{http://dx.doi.org/10.2514/1.35989}}
}

@techreport{Cervone_2008,
  author = {A.~Cervone and S.~Manservisi},
  title = {{A three-dimensional CFD program for the simulation of
                  the thermo-hydraulic behaviour of an open core liquid metal reactor}},
  institution = {ENEA: Ente per le Nuove tecnologie, l'Energia e l'Ambiente},
  day = 16,
  month = dec,
  year = 2008,
  number = {RSE/2009/85},
  note = {\url{http://www.enea.it/attivita_ricerca/energia/
  sistema_elettrico/Nucleare_fissione/Reattori_Innovativi/RSE85.pdf}}
}

@techreport{Hawkins_2008,
  author = {A.~Hawkins and J.~T.~Oden},
  title = {{Toward a predictive model of tumor growth}},
  institution = {Institute for Computational Engineering and Sciences (ICES),
                 The University of Texas at Austin},
  day = {20},
  month = nov,
  year = {2008},
  note = {\url{http://www.ices.utexas.edu/research/reports/2008/0829.pdf}}
}

@article{Antiga_2008,
  author = {L.~Antiga and M.~Piccinelli and L.~Botti and B.~Ene-Iordache and A.~Remuzzi and D.~A.~Steinman},
  title = {{An image-based modeling framework for patient-specific computational hemodynamics}},
  journal = {Medical and Biological Engineering and Computing},
  year = 2008,
  volume = 46,
  number = 11,
  month = nov,
  pages = {1097--1112},
  note = {\url{http://dx.doi.org/10.1007/s11517-008-0420-1}}
}

@techreport{Xu_2008,
  author = {D.~Xu and J.~Stare and A.~L.~Cooksy},
  title = {{Solving the vibrational {S}chr\"{o}dinger equation
                  on an arbitrary multidimensional potential
		  energy surface by the finite element method}},
  institution = {Computational Science Research Center,
                 San Diego State University},
  day = {15},
  month = oct,
  year = {2008},
  number = {CSRCR2008-26}
}

@techreport{Mahadevan_2008,
  author = {V.~S.~Mahadevan and J.~C.~Ragusa},
  title = {High-order spatio-temporal schemes for coupled, multi-physics reactor simulations},
  institution = {Idaho National Laboratory},
  month = sep,
  year = {2008},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/4120524.pdf}}
}

@article{Galbusera_2008,
  author = {F.~Galbusera and M.~Cioffi and M.~T.~Raimondi},
  title = {{An in silico bioreactor for simulating laboratory experiments in tissue engineering}},
  journal = {Biomedical Microdevices},
  year = 2008,
  volume = 10,
  number = 4,
  month = aug,
  pages = {547--554},
  note = {\url{http://dx.doi.org/10.1007/s10544-008-9164-9}}
}

@article{Piccinelli_2008,
  author = {M.~Piccinelli and L.~Botti and B.~Ene-Iordache
             and A.~Remuzzi and A.~Veneziani and L.~Antiga},
  title = {{Link between vortex structures and voronoi diagram in cerebral aneurysms}},
  journal = {Journal of Biomechanics},
  year = 2008,
  month = jul,
  volume = {41, Supplement 1},
  pages = {S12}
}

@article{VanCanneyt_2008,
  author = {K.~Van Canneyt and R.~Kaminsky and L.~Botti and
           L.~Antiga and J.~Tordoir and P.~Verdonck and S.~Eloot},
  title = {CAN A KINKED ARTERIO-VENOUS GRAFT CAUSE INSTABLE FLOW?
           A PATIENT-SPECIFIC VALIDATED COMPUTATIONAL STUDY},
  journal = {Journal of Biomechanics},
  volume = {41},
  number = {Supplement 1},
  pages = {S210},
  year = {2008},
  month = jul,
  issn = {0021-9290},
  note = {\url{http://dx.doi.org/10.1016/S0021-9290(08)70210-0}}
}

@article{Botti_2008,
  author = {L.~Botti and M.~Piccinelli and B.~Ene-Iordache and A.~Remuzzi and L.~Antiga},
  title = {AN OPEN SOURCE PARALLEL {AMR} {FE} SOLVER FOR BIOLOGICAL FLOWS BASED ON THE {LibMesh C++} LIBRARY},
  journal = {Journal of Biomechanics},
  volume = {41},
  number = {Supplement 1},
  pages = {S211},
  year = {2008},
  month = jul,
  issn = {0021-9290},
  note = {\url{http://dx.doi.org/10.1016/S0021-9290(08)70211-2}}
}

@article{Ahn_2008,
  author = {{Ahn}, H.~T. and {Shashkov}, M. and M.~A.~Christon},
  title = {{The moment-of-fluid method in action}},
  journal = {Communications in Numerical Methods in Engineering},
  year = 2008,
  month = jul,
  volume = {25},
  number = {10},
  pages = {1009--1018},
  note = {\url{http://dx.doi.org/10.1002/cnm.1135}}
}

@article{Powell_2008,
  author = {{Powell}, IV, A.~C. and {Arroyave}, R.},
  title = {{Open source software for materials and process modeling}},
  journal = {Journal of the Minerals, Metals and Materials Society},
  year = 2008,
  month = may,
  volume = 60,
  number = 5,
  pages = {32--39},
  note = {\url{http://dx.doi.org/10.1007/s11837-008-0057-4}}
}

@article{Kroger_2008,
  author = {T.~Kr\"{o}ger and T.~Preusser},
  title = {{Stability of the 8-tetrahedra shortest-interior-edge partitioning method}},
  journal = {Numerische Mathematik},
  year = 2008,
  month = may,
  volume = 109,
  number = 3,
  pages = {435--457},
  note = {\url{http://dx.doi.org/10.1007/s00211-008-0148-8}}
}

@article{Bhatia_2008,
  author = {M.~Bhatia and E.~Livnet},
  title = {{Design-oriented thermostructural analysis with external and internal radiation, Part 1: Steady state}},
  journal = {AIAA Journal},
  year = 2008,
  volume = 46,
  number = 3,
  month = mar,
  pages = {578--590},
  note = {\url{http://dx.doi.org/10.2514/1.26236}}
}

@conference{Barone_2008,
  author = {M.~F.~Barone and D.~J.~Segalman and H.~Thornquist and I.~Kalashnikova},
  title = {Galerkin reduced order models for compressible flow with structural interaction},
  booktitle = {46th AIAA Aerospace Sciences Meeting and Exhibit},
  address = {Reno, NV},
  year = {2008},
  note = {\url{http://www.stanford.edu/~irinak/reno08.pdf}}
}

@incollection{VonEstorff_2008,
  author = {O.~{von Estorff} and S.~Petersen and D.~Dreyer},
  title = {{Efficient Infinite Elements based on Jacobi Polynomials}},
  pages = {231--250},
  year = 2008,
  publisher = {Springer Berlin Heidelberg},
  editor = {Steffen Marburg and Bodo Nolte},
  booktitle = {Computational Acoustics of Noise Propagation in
               Fluids--Finite and Boundary Element Methods},
  volume = {},
  note = {\url{http://dx.doi.org/10.1007/978-3-540-77448-8_9}}
}

@inproceedings{DeSturler_2008,
  author = {E.~{De Sturler} and G.~H.~Paulino and S.~Wang},
  title = {Topology Optimization with Adaptive Mesh Refinement},
  booktitle = {{Proceedings of the 6th International Conference on
                 Computation of Shell and Spatial Structures (IASS-IACM 2008)}},
  editor = {J.~F.~Abel and J.~R.~Cooke},
  publisher = {Cornell University},
  address = {Ithaca, NY},
  year = {2008},
  note = {\url{http://www.math.vt.edu/people/sturler/
  publications/Proc-IASS-IACM_TopOptAMR_SturlerPaulinoWang_2008.pdf}}
}

@article{Stogner_2008,
  author = {R.~H.~Stogner and G.~F.~Carey and B.~T.~Murray},
  title = {{Approximation of Cahn-Hilliard diffuse interface models
              using parallel adaptive mesh refinement and coarsening with
	      $C^1$ elements}},
  journal = {International Journal for Numerical Methods in Engineering},
  year = 2008,
  volume = 76,
  number = 5,
  pages = {636--661},
  note = {\url{http://dx.doi.org/10.1002/nme.2337}}
}

@article{Berrone_2008,
  author = {S.~Berrone and E.~S\"{u}li},
  title = {{Two-sided a posteriori error bounds for incompressible quasi-Newtonian flows}},
  journal = {IMA Journal of Numerical Analysis},
  year = 2008,
  volume = 28,
  number = 2,
  pages = {382--421},
  note = {\url{http://dx.doi.org/10.1093/imanum/drm017}}
}

@article{Kirk_2008a,
  author = {B.~S.~Kirk and G.~F.~Carey},
  title = {{Development and validation of a SUPG finite element scheme for the compressible
              Navier-Stokes equations using a modified inviscid flux discretization}},
  journal = {International Journal for Numerical Methods in Fluids},
  year = 2008,
  volume = 57,
  number = 3,
  pages = {265--293},
  note = {\url{http://dx.doi.org/10.1002/fld.1635}}
}

@article{Brinkmeier_2008,
  author = {Brinkmeier, M. and Nackenhorst, U. and Petersen, S. and {von Estorff}, O.},
  title = {A Numerical Model for the Simulation of Tire Rolling Noise},
  journal = {Journal of Sound and Vibration},
  year = {2008},
  month = jan,
  volume = {309},
  number = {1--2},
  pages = {20--39},
  note = {\url{http://dx.doi.org/10.1016/j.jsv.2006.11.040}}
}

@inproceedings{Lu_2008,
  author = {Y.~Lu and A.~F.~Chatziioannou},
  title = {{Parallel adaptive finite element simulation for optical
                 molecular imaging with simplified spherical harmonics approximation}},
  booktitle = {{Nuclear Science Symposium Conference Record (NSS08)}},
  editor = {P.~Sellin},
  pages = {4039--4042},
  publisher = {IEEE},
  year = {2008},
  note = {\url{http://dx.doi.org/10.1109/NSSMIC.2008.4774171}}
}

@article{Anderson_2007,
  author = {{Anderson}, M. and {Kimn}, {J.-H.}},
  title = {{A numerical approach to space-time finite elements for the wave equation}},
  journal = {Journal of Computational Physics},
  eprint = {arXiv:gr-qc/0601099},
  year = 2007,
  month = sep,
  volume = 226,
  pages = {466--476},
  note = {\url{http://dx.doi.org/10.1016/j.jcp.2007.04.021}}
}

@inproceedings{Kidner_2007,
  author = {M.~R.~F.~Kidner and K.~Idrisi and J.~P.~Carneal and M.~E.~Johnson},
  title = {{Comparison of experiment, finite element, and wave based models for mass inclusions in poro-elastic layers}},
  booktitle = {{Proceedings of the 14th International Congress on Sound \& Vibration (ICSV14)}},
  address = {Cairns, Australia},
  year = 2007,
  month = jul # {~9--12,},
  note = {\url{http://data.mecheng.adelaide.edu.au/avc/
publications/public_papers/2007/kidner_icsv14_2007_p577.pdf}}
}

@inproceedings{Steensland_2007,
  author = {J.~Steensland and J.~W.~Peterson},
  title = {{A Study of Dynamically Adaptive Partitioning for AMR}},
  booktitle = {{Proceedings of the 2007 International Conference on Parallel and
                Distributed Processing Techniques and Applications (PDPTA'07)
		Volume 2}},
  month = jun # {~25--28,},
  pages = {503--509},
  address = {Las Vegas, NV},
  publisher = {CSREA Press},
  year = {2007},
  note = {ISBN: 1-60132-021-3}
}

@article{AufderMaur_2007,
  author = {{Auf der Maur}, M. and {Povolotskyi}, M. and {Sacconi}, F. and 
             {di Carlo}, A.},
  title = {{TIBERCAD: A new multiscale simulator for electronic and optoelectronic devices}},
  journal = {Superlattices and Microstructures},
  year = 2007,
  month = may,
  volume = 41,
  pages = {381--385},
  note = {\url{http://dx.doi.org/10.1016/j.spmi.2007.03.011}}
}

@article{Stogner_2007,
  author = {R.~H.~Stogner and G.~F.~Carey},
  title = {{$C^1$} macroelements in adaptive finite element methods},
  journal = {Int. J. Numerical Methods in Engineering},
  volume = 70,
  number = 9,
  pages = {1076--1095},
  month = may,
  year = 2007,
  note = {\url{http://dx.doi.org/10.1002/nme.1912}}
}

@inproceedings{Nam_2007,
  author = {K.~Nam and M.~M.~Aral},
  title = {{Optimal placement of monitoring sensors in lakes}},
  booktitle = {Proceedings of the 2007 Georgia Water Resources Conference},
  address = {University of Georgia},
  month = mar # {~27--29,},
  year = {2007},
  note = {\url{http://www.uga.edu/water/publication/uploads/2007/3.6.4.pdf}}
}

@article{Biermann_2007,
  author = {J.~Biermann and O.~von Estorff and S.~Petersen and H.~Schmidt},
  title = {Computational Model to Investigate the Sound Radiation from Rolling Tires},
  publisher = {TIRSOC},
  year = {2007},
  journal = {Tire Science and Technology},
  volume = {35},
  number = {3},
  pages = {209--225},
  note = {\url{http://dx.doi.org/10.2346/1.2768608}}
}

@article{Peterson_2007,
  author = {J.~W.~Peterson and G.~F.~Carey and D.~J.~Knezevic and B.~T.~Murray},
  title = {{Adaptive finite element methodology for tumor angiogenesis modeling}},
  journal = {Int.~J.~Numer.~Meth.~Eng.},
  volume = {69},
  number = {6},
  pages = {1212--1238},
  year = {2007},
  note = {\url{http://dx.doi.org/10.1002/nme.1802}}
}

@article{Berrone_2006,
  author = {S.~Berrone},
  title = {{Robust a posteriori error estimates for finite element
discretizations of the heat equation with discontinuous coefficients}},
  journal = {Mathematical Modelling and Numerical Analysis (M2AN)},
  month = nov,
  year = 2006,
  volume = 40,
  number = 6,
  pages = {991--1021},
  note = {\url{http://dx.doi.org/10.1051/m2an:2006034}}
}

@inproceedings{Crookston_2006,
  author = {J.~J.~Crookston and W.~Ruijter and A.~C.~Long and I.~A.~Jones},
  title = {Modelling mechanical performance including damage development
                for textile composites using a grid-based finite element method with
                adaptive mesh refinement},
  booktitle = {{Proceedings of the 8th International Conference on
                 Textile Composites (TEXCOMP-8)}},
  month = oct # {~16--18,},
  address = {Nottingham, UK},
  year = {2006},
  note = {\url{http://textiles.nottingham.ac.uk/T09-Crookston.pdf}}
}

@techreport{Knezevic_2006,
  author = {D.~J.~Knezevic},
  title = {Finite Element Methods for Deterministic Simulation
                  of Polymeric Fluids},
  institution = {Oxford University Computing Laboratory},
  month = oct,
  year = {2006},
  number = {NA-06/19},
  note = {\url{http://www.maths.warwick.ac.uk/multiscale/MSPreprints/ox-NA-19-06.pdf}}
}

@article{Schindler_2006,
  author = {{Schindler}, M. and {Talkner}, P. and {H{\"a}nggi}, P.},
  title = {{Computing stationary free-surface shapes in microfluidics}},
  journal = {Physics of Fluids},
  eprint = {arXiv:physics/0511217},
  year = 2006,
  month = oct,
  volume = 18,
  number = 10,
  pages = {103303},
  note = {\url{http://dx.doi.org/10.1063/1.2361291}}
}

@inproceedings{Catabriga_2006,
  author = {L.~Catabriga and J.~J.~Camata and A.~M.~P.~Valli and A.~L.~G.~A.~Coutinho and G.~F.~Carey},
  title = {{Reordering effects on preconditioned Krylov methods in AMR solutions of flow and transport, Paper CIL04-557}},
  booktitle = {{Proceedings of the XXVII Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE)}},
  publisher = {Brazilian Assoc. for Comp. Mechanics \& Latin American Assoc. of Comp. Methods in Engineering},
  year = {2006},
  month = sep # {~3--6,},
  note = {\url{http://www.inf.ufes.br/~luciac/papers/CIL04_557.pdf}}
}

@article{Estorff_2006,
  author = {O.~von~Estorff and S.~Petersen},
  title = {{Vibro-acoustic investigations using finite and infinite elements}},
  journal = {{Proceedings of the Gesellschaft f\"{u}r Angewandte Mathematik und Mechanik
              (GAMM) Annual Meeting 2006 (PAMM)}},
  year = 2006,
  volume = 6,
  number = 1,
  pages = {615--616},
  note = {\url{http://dx.doi.org/10.1002/pamm.200610288}}
}

@article{Marichalar_2006,
  author = {J.~J.~Marichalar and W.~C.~Rochelle and B.~S.~Kirk and C.~H.~Campbell},
  title = {{Boundary Layer/Streamline Surface Catalytic Heating Predictions on Space Shuttle Orbiter}},
  journal = {Journal of Spacecraft and Rockets},
  year = 2006,
  volume = 43,
  number = 6,
  pages = {1202--1215},
  note = {\url{http://dx.doi.org/10.2514/1.23082}}
}

@article{Petersen_2006,
  author = {Petersen, S. and Dreyer, D. and {von Estorff}, O.},
  title = {Assessment of finite and spectral element shape functions
              for efficient iterative simulations of interior acoustics},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  year = {2006},
  volume = {195},
  number = {44--47},
  pages = {6463--6478},
  note = {\url{http://dx.doi.org/10.1016/j.cma.2006.01.008}}
}

@article{Dreyer_2006,
  author = {D. Dreyer and S. Petersen and O. von Estorff},
  title = {Effectiveness and robustness of improved infinite elements for exterior acoustics},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  volume = {195},
  number = {29--32},
  pages = {3591--3607},
  year = {2006},
  issn = {0045-7825},
  note = {\url{http://dx.doi.org/10.1016/j.cma.2005.01.019}}
}

@inproceedings{Camata_2005,
  author = {J.~J.~Camata and L.~Catabriga and A.~M.~P.~Valli and A.~L.~G.~A.~Coutinho and G.~F.~Carey},
  title = {{Numerical Evaluation of the LCD method implemented in the LibMesh library, Paper CIL16-692}},
  booktitle = {{Proceedings of the XXVI Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE)}},
  publisher = {Brazilian Assoc. for Comp. Mechanics \& Latin American Assoc. of Comp. Methods in Engineering},
  year = {2005},
  month = oct # {~19--21,},
  note = {\url{http://www.inf.ufes.br/~luciac/papers/CIL-0692.pdf}}
}

@inproceedings{Carey_2005,
  author = {G.~F.~Carey and W.~Barth and B.~S.~Kirk and J.~W.~Peterson},
  title = {{Parallel CFD for Flow and Transport Applications
              Including Unstructured and Adaptive Grids}},
  booktitle = {Proceedings of Parallel CFD 2004:  Multidisciplinary Applications, G.~Winter,
             A.~Ecer, J.~Periaux, N.~Satofuka and P.~Fox (Eds)},
  publisher = {Elsevier Science B.V.},
  address = {Amsterdam, The Netherlands},
  month = oct,
  year = {2005},
  note = {ISBN: 0444520244}
}

@inproceedings{Antiga_2004,
  author = {L.~Antiga},
  title = {{Imaging and numerical fluid dynamics for the study of the
                 cardiovascular system}},
  booktitle = {{III Workshop Bioflumen:  Technological innovation and evaluation of medical
                 devices for the cardiovascular system}},
  editor = {M.~Grigioni},
  pages = {55--59},
  publisher = {Istituto Superiore di Sanit\`{a}},
  address = {Rome, Italy},
  month = nov,
  year = {2004}
}

@article{Carey_2004b,
  author = {G.~F.~Carey and W.~Barth and J.~A.~Woods
             and B.~S.~Kirk and M.~L.~Anderson and S.~Chow 
             and W.~Bangerth},
  title = {Modeling error and constitutive relations in simulation
             of flow and transport},
  journal = {Int. J. Numerical Methods in Fluid},
  year = {2004},
  volume = {46},
  number = {12},
  pages = {1211--1236},
  note = {\url{http://dx.doi.org/10.1002/fld.797}}
}

@article{Carey_2004a,
  author = {G.~F. Carey and M.~Anderson and B.~Carnes and B.~S.~Kirk},
  title = {Some aspects of adaptive grid technology related to boundary and interior layers},
  journal = {J. Comput. Appl. Math.},
  volume = {166},
  number = {1},
  year = {2004},
  issn = {0377-0427},
  pages = {55--86},
  note = {\url{http://dx.doi.org/10.1016/j.cam.2003.09.036}}
}