Please use the following citation to reference libMesh

[1] B. S. Kirk, J. W. Peterson, R. H. Stogner, and G. F. Carey. libMesh: A C++ Library for Parallel Adaptive Mesh Refinement/Coarsening Simulations. Engineering with Computers, 22(3-4):237-254, 2006. http://dx.doi.org/10.1007/s00366-006-0049-3.
@article{libMeshPaper,
  author = {B.~S.~Kirk and J.~W.~Peterson and R.~H.~Stogner and G.~F.~Carey},
  title = {{\texttt{libMesh}: A C++ Library for Parallel Adaptive Mesh
              Refinement/Coarsening Simulations}},
  journal = {Engineering with Computers},
  volume = {22},
  number = {3--4},
  pages = {237--254},
  year = {2006},
  note = {\url{http://dx.doi.org/10.1007/s00366-006-0049-3}}
}

Dissertations & Theses

[1] K. A. L. Gamble. Modeling three-dimensional deformation mechanisms in CANDU reactor fuel elements. Master's thesis, Royal Military College of Canada, May 2014. https://espace.rmc.ca/bitstream/11264/102/1/Gamble,%20Kyle%20-%20Thesis%20Final.pdf.
@mastersthesis{Gamble_2014,
  author = {K.~A.~L.~Gamble},
  school = {Royal Military College of Canada},
  title = {{Modeling three-dimensional deformation mechanisms in CANDU reactor fuel elements}},
  note = {\url{https://espace.rmc.ca/bitstream/11264/102/1/Gamble,%20Kyle%20-%20Thesis%20Final.pdf}},
  month = may,
  year = {2014}
}
[2] K. Steih. Reduced basis methods for time-periodic parametric partial differential equations. PhD thesis, Universität Ulm, April 2014. http://vts.uni-ulm.de/docs/2014/9093/vts_9093_13686.pdf.
@phdthesis{Steih_2014,
  author = {K.~Steih},
  school = {Universit\"{a}t Ulm},
  title = {{Reduced basis methods for time-periodic parametric partial differential equations}},
  note = {\url{http://vts.uni-ulm.de/docs/2014/9093/vts_9093_13686.pdf}},
  month = apr,
  year = {2014}
}
[3] C. Ryser. Cold ice in an alpine glacier and ice dynamics at the margin of the Greenland ice sheet. PhD thesis, ETH-Zürich, 2014. http://dx.doi.org/10.3929/ethz-a-010129038.
@phdthesis{Ryser_Thesis,
  author = {C.~Ryser},
  school = {ETH-Z\"{u}rich},
  title = {{Cold ice in an alpine glacier and ice dynamics at the margin of the Greenland ice sheet}},
  note = {\url{http://dx.doi.org/10.3929/ethz-a-010129038}},
  year = {2014}
}
[4] L. Wieme. Perception based heterogeneous subsurface scattering for film. Master's Thesis, Rochester Institute of Technology, August 2013. https://ritdml.rit.edu/handle/1850/16776.
@mastersthesis{Wieme_Thesis,
  author = {L.~Wieme},
  type = {{Master's Thesis}},
  school = {Rochester Institute of Technology},
  title = {{Perception based heterogeneous subsurface scattering for film}},
  note = {\url{https://ritdml.rit.edu/handle/1850/16776}},
  month = aug,
  year = {2013}
}
[5] D. F. M. Vasconcelos. Modelo de campo de fases Allen-Cahn baseado em resíduo para a simulação paralela e adaptativa de escoamentos incompressíveis. Master's Thesis, COPPE Universidade Federal do Rio de Janeiro, August 2013. http://www.coc.ufrj.br/index.php/dissertacoes-de-mestrado/378-2013/4280-daniel-francisco-maia-vasconcelos.
@mastersthesis{Vasconselos_Thesis,
  author = {D.~F.~M.~Vasconcelos},
  type = {{Master's Thesis}},
  school = {COPPE Universidade Federal do Rio de Janeiro},
  title = {{Modelo de campo de fases Allen-Cahn baseado em res\'{i}duo para a simula\c{c}\~{a}o paralela e adaptativa de escoamentos incompress\'{i}veis}},
  note = {\url{http://www.coc.ufrj.br/index.php/dissertacoes-de-mestrado/378-2013/4280-daniel-francisco-maia-vasconcelos}},
  month = aug,
  year = {2013}
}
[6] Z. Petrou. Thermo-electro-mechanical behavior of ferroelectric nanodots. Master's Thesis, ASE-EM dept., The University of Texas at Austin, August 2013. http://hdl.handle.net/2152/21783.
@mastersthesis{Petrou_Thesis,
  author = {Z.~Petrou},
  type = {{Master's Thesis}},
  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{Thermo-electro-mechanical behavior of ferroelectric nanodots}},
  note = {\url{http://hdl.handle.net/2152/21783}},
  month = aug,
  year = {2013}
}
[7] P.-Y. Trépanier. Modélisation radiobiologique pour la planification des traitements en radiothérapie à partir de données d'imagerie spécifiques aux patients. PhD thesis, Université de Montréal, July 2013. https://papyrus.bib.umontreal.ca/xmlui/bitstream/handle/1866/10241/Trepanier_Pier-Yves_2013_memoire.pdf.
@phdthesis{Trepanier_2013,
  author = {P.-Y.~Tr\'{e}panier},
  school = {Universit\'{e} de Montr\'{e}al},
  title = {{Mod\'{e}lisation radiobiologique pour la planification des traitements en
             radioth\'{e}rapie \`{a} partir de donn\'{e}es d'imagerie sp\'{e}cifiques aux patients}},
  note = {\url{https://papyrus.bib.umontreal.ca/xmlui/bitstream/handle/1866/10241/Trepanier_Pier-Yves_2013_memoire.pdf}},
  month = jul,
  year = 2013
}
[8] A. S. Butterfield. Exploration of the phase field framework MARMOT to include anisotropic grain boundaries with molecular dynamics. Senior thesis (Bachelor of Science), Brigham Young University-Idaho, July 2013. http://dx.doi.org/10.2172/1093887, http://www.byui.edu/Documents/physics/Theses/Aaron_ButterfieldS13.pdf.
@phdthesis{Butterfield_2013,
  author = {A.~S.~Butterfield},
  school = {Brigham Young University-Idaho},
  title = {{Exploration of the phase field framework MARMOT to include
             anisotropic grain boundaries with molecular dynamics}},
  note = {\url{http://dx.doi.org/10.2172/1093887}, \url{http://www.byui.edu/Documents/physics/Theses/Aaron_ButterfieldS13.pdf}},
  month = jul,
  type = {{Senior thesis (Bachelor of Science)}},
  year = {2013}
}
[9] M. C. Teague. Characterization and modeling of high burn-up mixed oxide fuel. PhD thesis, Colorado School of Mines, May 2013. http://hdl.handle.net/10217/78991.
@phdthesis{Teague_2013,
  author = {M.~C.~Teague},
  school = {Colorado School of Mines},
  title = {{Characterization and modeling of high burn-up mixed oxide fuel}},
  note = {\url{http://hdl.handle.net/10217/78991}},
  month = may,
  year = {2013}
}
[10] J. Huber. Interior-point methods for PDE-constrained optimization. PhD thesis, University of Basel, Switzerland, April 23, 2013. http://edoc.unibas.ch/28422/1/DisElHuberJohannes.pdf.
@phdthesis{Huber_2013,
  author = {J.~Huber},
  school = {University of Basel, Switzerland},
  title = {{Interior-point methods for PDE-constrained optimization}},
  note = {\url{http://edoc.unibas.ch/28422/1/DisElHuberJohannes.pdf}},
  month = apr # {~23,},
  year = {2013}
}
[11] V. V. Garg. Coupled flow systems, adjoint techniques and uncertainty quantification. PhD thesis, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, August 2012. http://repositories.lib.utexas.edu/handle/2152/ETD-UT-2012-08-6034.
@phdthesis{Garg_thesis,
  author = {V.~V.~Garg},
  school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  title = {{Coupled flow systems, adjoint techniques and uncertainty quantification}},
  note = {\url{http://repositories.lib.utexas.edu/handle/2152/ETD-UT-2012-08-6034}},
  month = aug,
  year = {2012}
}
[12] A. L. Rossa. Parallel adaptive simulation of incompressible viscous flows using stabilized finite elements. PhD thesis, Department of Civil Engineering, COPPE/UFRJ, March 2012. http://www.coc.ufrj.br/index.php/teses-de-doutorado/156-2012/2242-andre-luis-rossa#abstract.
@phdthesis{Rossa_thesis,
  author = {A.~L.~Rossa},
  school = {Department of Civil Engineering, COPPE/UFRJ},
  title = {{Parallel adaptive simulation of incompressible viscous flows using stabilized finite elements}},
  note = {\url{http://www.coc.ufrj.br/index.php/teses-de-doutorado/156-2012/2242-andre-luis-rossa#abstract}},
  month = mar,
  year = {2012}
}
[13] G. Bornia. Analysis of optimal control problems for the incompressible MHD equations and implementation in a finite element multiphysics code. PhD thesis, Università di Bologna, 2012. http://amsdottorato.cib.unibo.it/4868/1/giorgio_bornia_tesi.pdf.
@phdthesis{Bornia_thesis,
  author = {G.~Bornia},
  school = {Universit\`{a} di Bologna},
  title = {{Analysis of optimal control problems for the incompressible MHD equations and implementation in a finite element multiphysics code}},
  note = {\url{http://amsdottorato.cib.unibo.it/4868/1/giorgio_bornia_tesi.pdf}},
  year = {2012}
}
[14] K. Lee. Understanding new regimes for light-matter interactions. PhD thesis, Massachusetts Institute of Technology, June 2011. http://dspace.mit.edu/handle/1721.1/66018.
@phdthesis{Lee_dissertation,
  author = {K.~Lee},
  school = {Massachusetts Institute of Technology},
  title = {{Understanding new regimes for light-matter interactions}},
  note = {\url{http://dspace.mit.edu/handle/1721.1/66018}},
  month = jun,
  year = {2011}
}
[15] J. J. Camata. Estratégias computacionais de alto desempenho aplicadas ao método dos elementos finitos. PhD thesis, COPPE Universidade Federal do Rio de Janeiro, May 2011. http://objdig.ufrj.br/60/teses/coppe_d/JoseJeronimoCamata.pdf.
@phdthesis{Camata_2011,
  author = {J.~J.~Camata},
  school = {COPPE Universidade Federal do Rio de Janeiro},
  title = {{Estrat\'{e}gias computacionais de alto desempenho aplicadas ao m\'{e}todo dos elementos finitos}},
  note = {\url{http://objdig.ufrj.br/60/teses/coppe_d/JoseJeronimoCamata.pdf}},
  month = may,
  year = {2011}
}
[16] A. J. Hawkins-Daarud. Toward a predictive model of tumor growth. PhD thesis, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, May 2011. http://repositories.lib.utexas.edu/handle/2152/ETD-UT-2011-05-3395.
@phdthesis{HawkinsDaarud_thesis,
  author = {A.~J.~Hawkins-Daarud},
  school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  title = {{Toward a predictive model of tumor growth}},
  note = {\url{http://repositories.lib.utexas.edu/handle/2152/ETD-UT-2011-05-3395}},
  month = may,
  year = {2011}
}
[17] L. Nagler. Simulation of sound transmission through poroelastic plate-like structures. PhD thesis, Graz University of Technology, Institute of Applied Mechanics, February 2011. http://fmysql.tu-graz.ac.at/~karl/verlagspdf/nagler_buch_13052011.pdf.
@phdthesis{Nagler_dissertation,
  author = {L.~Nagler},
  school = {Graz University of Technology, Institute of Applied Mechanics},
  title = {{Simulation of sound transmission through poroelastic plate-like structures}},
  note = {\url{http://fmysql.tu-graz.ac.at/~karl/verlagspdf/nagler_buch_13052011.pdf}},
  month = feb,
  year = {2011}
}
[18] J. A. Kallen-Brown. Computational methods for ice flow simulation. PhD thesis, ETH-Zürich, 2011. http://dx.doi.org/10.3929/ethz-a-007316245.
@phdthesis{Brown_thesis,
  author = {J.~A.~Kallen-Brown},
  school = {ETH-Z\"{u}rich},
  title = {{Computational methods for ice flow simulation}},
  note = {\url{http://dx.doi.org/10.3929/ethz-a-007316245}},
  year = {2011}
}
[19] V. S. Mahadevan. High resolution numerical methods for coupled non-linear multi-physics simulations with applications in reactor analysis. PhD thesis, Texas A&M University, August 2010. http://repository.tamu.edu/bitstream/handle/1969.1/ETD-TAMU-2010-08-8579/MAHADEVAN-DISSERTATION.pdf.
@phdthesis{Mahadevan_2010,
  author = {V.~S.~Mahadevan},
  school = {Texas A\&M University},
  title = {{High resolution numerical methods for coupled non-linear multi-physics simulations with applications in reactor analysis}},
  note = {\url{http://repository.tamu.edu/bitstream/handle/1969.1/ETD-TAMU-2010-08-8579/MAHADEVAN-DISSERTATION.pdf}},
  month = aug,
  year = {2010}
}
[20] M. Nenning. Infinite Elements for Elasto- and Poroelastodynamics. PhD thesis, Graz University of Technology, Institute of Applied Mechanics, August 2010. http://fmysql.tu-graz.ac.at/~karl/verlagspdf/buch_nenning_10112010.pdf.
@phdthesis{Nenning_Dissertation,
  author = {M.~Nenning},
  school = {Graz University of Technology, Institute of Applied Mechanics},
  title = {{Infinite Elements for Elasto- and Poroelastodynamics}},
  note = {\url{http://fmysql.tu-graz.ac.at/~karl/verlagspdf/buch_nenning_10112010.pdf}},
  month = aug,
  year = {2010}
}
[21] J. A. Dec. Three dimensional finite element ablative thermal response analysis applied to heatshield penetration design. PhD thesis, Georgia Institute of Technology, May 2010. https://smartech.gatech.edu/handle/1853/39588.
@phdthesis{Dec_2010,
  author = {J.~A.~Dec},
  school = {Georgia Institute of Technology},
  title = {{Three dimensional finite element ablative thermal response analysis applied to heatshield penetration design}},
  note = {\url{https://smartech.gatech.edu/handle/1853/39588}},
  month = may,
  year = {2010}
}
[22] E. Petrolati. Study and Optimization of Polariton LASERs. PhD thesis, Università Degli Studi Di Roma “Tor Vergata”, December 2008. http://art.torvergata.it/bitstream/2108/1116/1/FINALE.pdf.
@phdthesis{Petrolati_Dissertation,
  author = {E.~Petrolati},
  school = {Universit\`{a} Degli Studi Di Roma ``Tor Vergata''},
  title = {{Study and Optimization of Polariton LASERs}},
  note = {\url{http://art.torvergata.it/bitstream/2108/1116/1/FINALE.pdf}},
  month = dec,
  year = {2008}
}
[23] K. Nam. Optimization of paths and locations of water quality monitoring systems in surface water environments. PhD thesis, Georgia Institute of Technology, August 2008. https://smartech.gatech.edu/jspui/bitstream/1853/24745/1/nam_kijin_200808_phd.pdf.
@phdthesis{Nam_2008,
  author = {K.~Nam},
  school = {Georgia Institute of Technology},
  title = {{Optimization of paths and locations of water quality monitoring systems in surface water environments}},
  note = {\url{https://smartech.gatech.edu/jspui/bitstream/1853/24745/1/nam_kijin_200808_phd.pdf}},
  month = aug,
  year = {2008}
}
[24] R. H. Stogner. Parallel Adaptive C1 Macro-Elements for Nonlinear Thin Film and Non-Newtonian Flow Problems. PhD thesis, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, August 2008. http://users.ices.utexas.edu/~roystgnr/dissertation/dissertation-stogner.pdf.
@phdthesis{Stogner_Dissertation,
  author = {R.~H.~Stogner},
  school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  title = {{Parallel Adaptive C1 Macro-Elements for Nonlinear Thin Film and Non-Newtonian Flow Problems}},
  note = {\url{http://users.ices.utexas.edu/~roystgnr/dissertation/dissertation-stogner.pdf}},
  month = aug,
  year = {2008}
}
[25] F. Rammerstorfer. Simulation von Wellenausbreitung unter Verwendung von `Perfectly Matched Layers'. PhD thesis, Technische Universität Graz, June 2008. http://portal.tugraz.at/portal/page/portal/Files/i2610/files/Lehre/Abschlussarbeiten/DA/rammerstorfer_dipl.pdf.
@phdthesis{Rammerstorfer_2008,
  author = {F.~Rammerstorfer},
  school = {Technische Universit\"{a}t Graz},
  title = {{Simulation von Wellenausbreitung unter Verwendung von `Perfectly Matched Layers'}},
  note = {\url{http://portal.tugraz.at/portal/page/portal/Files/i2610/files/Lehre/Abschlussarbeiten/DA/rammerstorfer_dipl.pdf}},
  month = jun,
  year = {2008}
}
[26] S. Wang. Krylov subspace methods for topology optimization on adaptive meshes. PhD thesis, University of Illinois at Urbana-Champaign, May 2008. http://gradworks.umi.com/32/90/3290423.html.
@phdthesis{Wang_Dissertation,
  author = {S.~Wang},
  school = {University of Illinois at Urbana-Champaign},
  title = {{Krylov subspace methods for topology optimization on adaptive meshes}},
  note = {\url{http://gradworks.umi.com/32/90/3290423.html}},
  month = may,
  year = {2008}
}
[27] J. W. Peterson. Parallel Adaptive Finite Element Methods for Problems in Natural Convection. PhD thesis, ASE-EM dept., The University of Texas at Austin, May 2008. http://www.cfdlab.ae.utexas.edu/~peterson/diss.pdf.
@phdthesis{Peterson_Dissertation,
  author = {J.~W.~Peterson},
  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{Parallel Adaptive Finite Element Methods for Problems in Natural Convection}},
  note = {\url{http://www.cfdlab.ae.utexas.edu/~peterson/diss.pdf}},
  month = may,
  year = {2008}
}
[28] D. J. Knezevic. Analysis and Implementation of Numerical Methods for Simulating Dilute Polymeric Fluids. PhD thesis, University of Oxford, Balliol College, Michaelmas Term 2008. http://www.comlab.ox.ac.uk/files/1416/knezevic-thesis.pdf.
@phdthesis{Knezevic_Dissertation,
  author = {D.~J.~Knezevic},
  school = {University of Oxford, Balliol College},
  title = {{Analysis and Implementation of Numerical Methods for Simulating Dilute Polymeric Fluids}},
  note = {\url{http://www.comlab.ox.ac.uk/files/1416/knezevic-thesis.pdf}},
  month = {Michaelmas Term},
  year = {2008}
}
[29] B. S. Kirk. Adaptive Finite Element Simulation of Flow and Transport Applications on Parallel Computers. PhD thesis, ASE-EM dept., The University of Texas at Austin, May 2007. http://www.cfdlab.ae.utexas.edu/~benkirk/dissertation.pdf.
@phdthesis{Kirk_Dissertation,
  author = {B.~S.~Kirk},
  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{Adaptive Finite Element Simulation of Flow and Transport Applications on Parallel Computers}},
  note = {\url{http://www.cfdlab.ae.utexas.edu/~benkirk/dissertation.pdf}},
  month = may,
  year = {2007}
}
[30] J. W. Peterson. A Numerical Investigation of Bénard Convection in Small Aspect Ratio Containers. Master's Report, ASE-EM dept., The University of Texas at Austin, May 2003. http://www.cfdlab.ae.utexas.edu/~peterson/masters.pdf.
@mastersthesis{Peterson_Thesis,
  author = {J.~W.~Peterson},
  type = {{Master's Report}},
  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{A Numerical Investigation of B\'{e}nard Convection in Small Aspect Ratio Containers}},
  note = {\url{http://www.cfdlab.ae.utexas.edu/~peterson/masters.pdf}},
  month = may,
  year = {2003}
}

Preprints

[1] A. Corsini, F. Rispoli, A. G. Sheard, K. Takizawa, T. E. Tezduyar, and P. Venturini. A variational multiscale method for particle-cloud tracking in turbomachinery flows. Computational Mechanics, July 2014. http://dx.doi.org/10.1007/s00466-014-1050-0.
@article{Corsini_2014,
  author = {A.~Corsini and F.~Rispoli and A.~G.~Sheard and K.~Takizawa and T.~E.~Tezduyar and P.~Venturini},
  title = {{A variational multiscale method for particle-cloud tracking in turbomachinery flows}},
  journal = {Computational Mechanics},
  month = jul,
  year = 2014,
  note = {\url{http://dx.doi.org/10.1007/s00466-014-1050-0}}
}
[2] F. Ballarin, A. Manzoni, A. Quarteroni, and G. Rozza. Supremizer stabilization of POD-Galerkin approximation of parametrized Navier-Stokes equations. Technical Report MOX:13/2014, MATHICSE:23.2014, MOX, Dipartimento di Matematica, “F. Brioschi” Politecnico di Milano and MATHICSE, École Polytechnique Fédérale de Lausanne, April 2014. http://mox.polimi.it/it/progetti/pubblicazioni/quaderni/13-2014.pdf, http://mathicse.epfl.ch/page-68906-en.html.
@techreport{Ballarin_2014,
  author = {F.~Ballarin and A.~Manzoni and A.~Quarteroni and G.~Rozza},
  title = {{Supremizer stabilization of POD-Galerkin approximation of parametrized Navier-Stokes equations}},
  institution = {MOX, Dipartimento di Matematica, ``F.~Brioschi'' Politecnico di Milano and
                 MATHICSE, \'{E}cole Polytechnique F\'{e}d\'{e}rale de Lausanne},
  month = apr,
  year = {2014},
  number = {MOX:13/2014, MATHICSE:23.2014},
  note = {\url{http://mox.polimi.it/it/progetti/pubblicazioni/quaderni/13-2014.pdf},
                 \url{http://mathicse.epfl.ch/page-68906-en.html}}
}
[3] C. Ryser, M. P. Lüthi, L. C. Andrews, G. A. Catania, M. Funk, R. Hawley, M. Hoffman, and T. A. Neumann. Caterpillar-like ice motion in the ablation zone of the Greenland ice sheet. Journal of Geophysical Research: Earth Surface, 2014. http://dx.doi.org/10.1002/2013JF003067.
@article{Ryser_2014b,
  author = {C.~Ryser and M.~P.~L\"{u}thi and L.~C.~Andrews and G.~A.~Catania and M.~Funk and R.~Hawley and M.~Hoffman and T.~A.~Neumann},
  title = {{Caterpillar-like ice motion in the ablation zone of the Greenland ice sheet}},
  journal = {Journal of Geophysical Research: Earth Surface},
  year = 2014,
  note = {\url{http://dx.doi.org/10.1002/2013JF003067}}
}
[4] J. Hansen, J. Peterson, J. Morel, J. Ragusa, and Y. Wang. A least-squares transport equation compatible with voids. Journal of Computational and Theoretical Transport, 2014. http://dx.doi.org/10.1080/00411450.2014.927364.
@article{Hansen_2014,
  author = {J.~Hansen and J.~Peterson and J.~Morel and J.~Ragusa and Y.~Wang},
  title = {{A least-squares transport equation compatible with voids}},
  journal = {Journal of Computational and Theoretical Transport},
  year = 2014,
  note = {\url{http://dx.doi.org/10.1080/00411450.2014.927364}}
}
[5] H. Gao, H. Wang, C. Berry, X. Luo, and B. E. Griffith. Quasi-static image-based immersed boundary-finite element model of left ventricle under diastolic loading. International Journal for Numerical Methods in Biomedical Engineering, 2014. http://dx.doi.org/10.1002/cnm.2652.
@article{Gao_2014,
  author = {H.~Gao and H.~Wang and C.~Berry and X.~Luo and B.~E.~Griffith},
  title = {{Quasi-static image-based immersed boundary-finite element model of left ventricle under diastolic loading}},
  journal = {International Journal for Numerical Methods in Biomedical Engineering},
  year = 2014,
  note = {\url{http://dx.doi.org/10.1002/cnm.2652}}
}
[6] E. E. Prudencio, P. T. Bauman, D. Faghihi, K. Ravi-Chandar, and J. T. Oden. A computational framework for dynamic data driven material damage control, based on Bayesian inference and model selection. International Journal for Numerical Methods in Engineering, 2014. http://dx.doi.org/10.1002/nme.4669.
@article{Prudencio_2014,
  author = {E.~E.~Prudencio and P.~T.~Bauman and D.~Faghihi and K.~Ravi-Chandar and J.~T.~Oden},
  title = {{A computational framework for dynamic data driven material damage control, based on Bayesian inference and model selection}},
  journal = {International Journal for Numerical Methods in Engineering},
  year = 2014,
  note = {\url{http://dx.doi.org/10.1002/nme.4669}}
}
[7] B. E. Griffith and X. Luo. Hybrid finite difference/finite element version of the immersed boundary method. PREPRINT, Submitted to IJNME, 2012. http://www.math.nyu.edu/~griffith/docs/griffith_luo_ibfem.pdf.
@article{Griffith_2012,
  author = {B.~E.~Griffith and X.~Luo},
  title = {{Hybrid finite difference/finite element version of the immersed boundary method}},
  journal = {PREPRINT, Submitted to IJNME},
  year = 2012,
  note = {\url{http://www.math.nyu.edu/~griffith/docs/griffith_luo_ibfem.pdf}}
}

2015

[1] S. Schunert, Y. Wang, R. C. Martineau, and M. D. DeHart. A new mathematical adjoint for the modified SAAF-SN equations. Annals of Nuclear Energy, 75:340-352, January 2015. http://dx.doi.org/10.1016/j.anucene.2014.08.028.
@article{Schunert_2015,
  author = {S.~Schunert and Y.~Wang and R.~C.~Martineau and M.~D.~DeHart},
  title = {{A new mathematical adjoint for the modified SAAF-S$_\text{N}$ equations}},
  journal = {Annals of Nuclear Energy},
  month = jan,
  year = 2015,
  volume = 75,
  pages = {340--352},
  note = {\url{http://dx.doi.org/10.1016/j.anucene.2014.08.028}}
}
[2] D. Król, J. Harris, and D. Zydek. Hybrid GPU/CPU approach to multiphysics simulation. In H. Selvaraj, D. Zydek, and G. Chmaj, editors, Progress in Systems Engineering, volume 1089 of Advances in Intelligent Systems and Computing, pages 893-899. Springer International, 2015. http://dx.doi.org/10.1007/978-3-319-08422-0_130.
@inproceedings{Krol_2015,
  author = {D.~Kr\'{o}l and J.~Harris and D.~Zydek},
  title = {{Hybrid GPU/CPU approach to multiphysics simulation}},
  booktitle = {{Progress in Systems Engineering}},
  series = {Advances in Intelligent Systems and Computing},
  volume = 1089,
  editor = {H.~Selvaraj and D.~Zydek and G.~Chmaj},
  pages = {893--899},
  publisher = {Springer International},
  year = {2015},
  note = {\url{http://dx.doi.org/10.1007/978-3-319-08422-0_130}}
}

2014

[1] E. E. Prudencio, P. T. Bauman, S. V. Williams, D. Faghihi, K. Ravi-Chandar, and J. T. Oden. Real-time inference of stochastic damage in composite materials. Composites Part B: Engineering, 67:209-219, November 2014. http://dx.doi.org/10.1016/j.compositesb.2014.07.004.
@article{Prudencio_2014b,
  author = {E.~E.~Prudencio and P.~T.~Bauman and S.~V.~Williams and D.~Faghihi and K.~Ravi-Chandar and J.~T.~Oden},
  title = {{Real-time inference of stochastic damage in composite materials}},
  journal = {Composites Part B: Engineering},
  year = 2014,
  volume = 67,
  month = nov,
  pages = {209--219},
  note = {\url{http://dx.doi.org/10.1016/j.compositesb.2014.07.004}}
}
[2] H. Huang, B. Spencer, and J. Hales. Discrete element method for simulation of early-life thermal fracturing behavior in ceramic nuclear fuel pellets. Nuclear Engineering and Design, 278:515-528, October 2014. http://dx.doi.org/10.1016/j.nucengdes.2014.05.049.
@article{Huang_2014,
  author = {H.~Huang and B.~Spencer and J.~Hales},
  title = {{Discrete element method for simulation of early-life thermal fracturing behavior in ceramic nuclear fuel pellets}},
  journal = {Nuclear Engineering and Design},
  month = oct,
  year = 2014,
  volume = 278,
  pages = {515--528},
  note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2014.05.049}}
}
[3] C. Unal and J. D. Galloway. Final report on accident tolerant fuel performance analysis of APMT-steel clad/UO2 fuel and APMT-steel clad/UN-U3Si5 fuel concepts. Technical Report LA-UR-14-27175, Los Alamos National Laboratory, September 2014. http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-14-27175.
@techreport{Unal_2014,
  author = {C.~Unal and J.~D.~Galloway},
  title = {{Final report on accident tolerant fuel performance analysis of
                  APMT-steel clad/UO$_2$ fuel and APMT-steel clad/UN-U$_3$Si$_5$ fuel concepts}},
  institution = {Los Alamos National Laboratory},
  day = 12,
  month = sep,
  year = 2014,
  number = {LA-UR-14-27175},
  note = {\url{http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-14-27175}}
}
[4] M. E. Cournoyer. Fire modeling of an emerging fire suppression system. Journal of Chemical Health and Safety, (5):8-13, September/October 2014. http://dx.doi.org/10.1016/j.jchas.2014.05.011.
@article{Cournoyer_2014,
  author = {M.~E.~Cournoyer},
  title = {{Fire modeling of an emerging fire suppression system}},
  journal = {Journal of Chemical Health and Safety},
  month = sep # {/} # oct,
  year = 2014,
  vol = 21,
  number = 5,
  pages = {8--13},
  note = {\url{http://dx.doi.org/10.1016/j.jchas.2014.05.011}}
}
[5] O. Courty, A. T. Motta, and J. D. Hales. Modeling and simulation of hydrogen behavior in Zircaloy-4 fuel cladding. Journal of Nuclear Materials, 452(1-3):311-320, September 2014. http://dx.doi.org/10.1016/j.jnucmat.2014.05.013.
@article{Courty_2014,
  author = {O.~Courty and A.~T.~Motta and J.~D.~Hales},
  title = {{Modeling and simulation of hydrogen behavior in Zircaloy-4 fuel cladding}},
  journal = {Journal of Nuclear Materials},
  year = 2014,
  volume = {452},
  number = {1--3},
  pages = {311--320},
  month = sep,
  note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2014.05.013}}
}
[6] J. D. Hales, S. R. Novascone, B. W. Spencer, R. L. Williamson, G. Pastore, and D. M. Perez. Verification of the BISON fuel performance code. Annals of Nuclear Energy, 71:81-90, September 2014. http://dx.doi.org/10.1016/j.anucene.2014.03.027.
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  author = {J.~D.~Hales and S.~R.~Novascone and B.~W.~Spencer and R.~L.~Williamson and G.~Pastore and D.~M.~Perez},
  title = {{Verification of the BISON fuel performance code}},
  journal = {Annals of Nuclear Energy},
  year = 2014,
  volume = 71,
  month = sep,
  pages = {81--90},
  note = {\url{http://dx.doi.org/10.1016/j.anucene.2014.03.027}}
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[7] I. Kalashnikova, M. F. Barone, J. A. Fike, S. Arunajatesan, and B. G. van Bloemen Waanders. Approaches for building stable projection-based reduced order models. In Reduced-Order Modeling (ROM) Workshop, Livermore, CA. Sandia National Laboratories, SAND2014-16583PE, August 7, 2014. http://www.sandia.gov/~ikalash/kalash_rom_day_aug7_2014_final.pdf.
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  author = {I.~Kalashnikova and M.~F.~Barone and J.~A.~Fike and S.~Arunajatesan and B.~G.~van Bloemen Waanders},
  title = {{Approaches for building stable projection-based reduced order models}},
  booktitle = {{Reduced-Order Modeling (ROM) Workshop, Livermore, CA}},
  publisher = {Sandia National Laboratories, SAND2014-16583PE},
  month = aug # {~7,},
  year = {2014},
  note = {\url{http://www.sandia.gov/~ikalash/kalash_rom_day_aug7_2014_final.pdf}}
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[8] B. Philip, M. A. Berrill, S. Allu, S. P. Hamilton, R. S. Sampath, K. T. Clarno, and G. A. Dilts. A parallel multi-domain solution methodology applied to nonlinear thermal transport problems in nuclear fuel pins. ArXiv e-prints, (1408.4351), August 2014. http://arxiv.org/abs/1408.4351.
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  title = {A parallel multi-domain solution methodology applied to nonlinear thermal transport problems in nuclear fuel pins},
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  note = {\url{http://arxiv.org/abs/1408.4351}}
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[9] D. Schillinger, S. J. Hossain, and T. J. R. Hughes. Reduced Bézier element quadrature rules for quadratic and cubic splines in isogeometric analysis. Computer Methods in Applied Mechanics and Engineering, 277:1-45, August 2014. http://dx.doi.org/10.1016/j.cma.2014.04.008.
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  title = {{Reduced B\'{e}zier element quadrature rules for quadratic and cubic splines in isogeometric analysis}},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  year = 2014,
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  month = aug,
  note = {\url{http://dx.doi.org/10.1016/j.cma.2014.04.008}}
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[10] D. A. Andersson, P. Garcia, X.-Y. Liu, G. Pastore, M. Tonks, P. Millett, B. Dorado, D. R. Gaston, D. Andrs, R. L. Williamson, R. C. Martineau, B. P. Uberuaga, and C. R. Stanek. Atomistic modeling of intrinsic and radiation-enhanced fission gas (Xe) diffusion in UO2x: Implications for nuclear fuel performance modeling. Journal of Nuclear Materials, 451(1-3):225-242, August 2014. http://dx.doi.org/10.1016/j.jnucmat.2014.03.041.
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             D.~R.~Gaston and D.~Andrs and R.~L.~Williamson and R.~C.~Martineau and B.~P.~Uberuaga and C.~R.~Stanek},
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              in UO$_{2\pm x}$: Implications for nuclear fuel performance modeling}},
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  year = 2014,
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  note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2014.03.041}}
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[11] S. Simunovic, S. L. Voit, and T. M. Besmann. Oxygen behavior and diffusion model in LWR fuel using the Thermochimica module in MOOSE/BISON. Technical Report ORNL/TM-2014/293, Oak Ridge National Laboratory, July 2014. http://info.ornl.gov/sites/publications/Files/Pub50954.pdf.
@techreport{Simunovic_2014,
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  title = {{Oxygen behavior and diffusion model in LWR fuel using the Thermochimica module in MOOSE/BISON}},
  institution = {Oak Ridge National Laboratory},
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  note = {\url{http://info.ornl.gov/sites/publications/Files/Pub50954.pdf}}
}
[12] R. L. Williamson, J. D. Hales, D. M. Perez, S. R. Novascone, and G. Pastore. BISON Software V&V Plan. Technical Report INL/EXT-14-31671, Idaho National Laboratory, July 2014. http://www.osti.gov/scitech/biblio/1149007.
@techreport{Williamson_2014,
  author = {R.~L.~Williamson and J.~D.~Hales and D.~M.~Perez and S.~R.~Novascone and G.~Pastore},
  title = {{BISON Software V\&V Plan}},
  institution = {Idaho National Laboratory},
  day = {1},
  month = jul,
  year = {2014},
  number = {INL/EXT-14-31671},
  note = {\url{http://www.osti.gov/scitech/biblio/1149007}}
}
[13] E. Yeniaras, D. T. Fuentes, S. J. Fahrenholtz, J. S. Weinberg, F. Maier, J. D. Hazle, and R. J. Stafford. Design and initial evaluation of a treatment planning software system for MRI-guided laser ablation in the brain. International Journal of Computer Assisted Radiology and Surgery, 9(4):659-667, July 2014. http://dx.doi.org/10.1007/s11548-013-0948-x.
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[14] D. F. M. Vasconcelos, A. L. Rossa, and A. L. G. A. Coutinho. A residual-based Allen-Cahn phase field model for the mixture of incompressible fluid flows. International Journal for Numerical Methods in Fluids, 75(9):645-667, July 2014. http://dx.doi.org/10.1002/fld.3910.
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[15] S. Muppidi, M. Barnhardt, G. E. Palmer, N. N. Mansour, M. Wright, and J. Lachaud. Toward ablative material response coupling in DPLR. In 11th AIAA/ASME Joint Thermophysics and Heat Transfer Conference, June 16-20, 2014. http://arc.aiaa.org/doi/abs/10.2514/6.2014-2120.
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  month = jun # {~16--20,},
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[16] G. E. Palmer, M. Barnhardt, B. Kirk, A. J. Amar, Y.-K. Chen, and N. N. Mansour. Coupled CFD-ablation response model simulations using the libMesh framework. In 11th AIAA/ASME Joint Thermophysics and Heat Transfer Conference, June 16-20, 2014. http://arc.aiaa.org/doi/abs/10.2514/6.2014-2123.
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  title = {{Coupled CFD-ablation response model simulations using the libMesh framework}},
  booktitle = {{11th AIAA/ASME Joint Thermophysics and Heat Transfer Conference}},
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[17] C. Rabiti, A. Alfonsi, J. Cogliati, D. Mandelli, and R. Kinoshita. RAVEN, A new software for dynamic risk analysis. In Probabilistic Safety Assessment and Management (PSAM 12), Honolulu, HI, June 2014. http://psam12.org/proceedings/paper/paper_372_1.pdf.
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[18] M. O. Delchini, R. A. Berry, and J. Ragusa. RELAP-7 Numerical Stabilization: Entropy Viscosity Method. Technical Report INL/EXT-14-32352, Idaho National Laboratory, June 2014. http://www.osti.gov/scitech/biblio/1149027.
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  title = {{RELAP-7 Numerical Stabilization: Entropy Viscosity Method}},
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  note = {\url{http://www.osti.gov/scitech/biblio/1149027}}
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[19] I. Kalashnikova, S. Arunajatesan, M. F. Barone, B. G. van Bloemen Waanders, and J. A. Fike. Reduced order modeling for prediction and control of large-scale systems. Technical Report SAND2014-4693, Sandia National Laboratories, May 2014. http://www.sandia.gov/~ikalash/ROM_Final_SAND_report.pdf.
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  title = {{Reduced order modeling for prediction and control of large-scale systems}},
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[20] J. M. Gimenez, N. M. Nigro, and S. R. Idelsohn. Evaluating the performance of the particle finite element method in parallel architectures. Computational Particle Mechanics, 1(1):103-116, May 2014. http://dx.doi.org/10.1007/s40571-014-0009-4.
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  title = {{NEAMS software V\&V plan for the MARMOT software}},
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  note = {\url{http://dx.doi.org/10.1088/0965-0393/22/4/045012}}
}
[30] V. Vavourakis, A. Kazakidi, D. P. Tsakiris, and J. A. Ekaterinaris. A nonlinear dynamic finite element approach for simulating muscular hydrostats. Computer Methods in Biomechanics and Biomedical Engineering, 17(8):917-931, 2014. http://dx.doi.org/10.1080/10255842.2012.723702.
@article{Vavourakis_2014,
  author = {V.~Vavourakis and A.~Kazakidi and D.~P.~Tsakiris and J.~A.~Ekaterinaris},
  title = {{A nonlinear dynamic finite element approach for simulating muscular hydrostats}},
  journal = {Computer Methods in Biomechanics and Biomedical Engineering},
  volume = {17},
  number = {8},
  pages = {917--931},
  year = 2014,
  note = {\url{http://dx.doi.org/10.1080/10255842.2012.723702}}
}
[31] M. P. Short, D. Gaston, C. R. Stanek, and S. Yip. A perspective on coupled multiscale simulation and validation in nuclear materials. Materials Research Society Bulletin, 39(1):71-77, January 2014. http://dx.doi.org/10.1557/mrs.2013.315.
@article{Short_2014,
  author = {M.~P.~Short and D.~Gaston and C.~R.~Stanek and S.~Yip},
  title = {{A perspective on coupled multiscale simulation and validation in nuclear materials}},
  journal = {Materials Research Society Bulletin},
  year = 2014,
  month = jan,
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[32] J. L. Eftang and A. T. Patera. A port-reduced static condensation reduced basis element method for large component-synthesized structures: approximation and a posteriori error estimation. Advanced Modeling and Simulation in Engineering Sciences, 1(3), January 2014. http://dx.doi.org/10.1186/2213-7467-1-3.
@article{Eftang_2014,
  author = {J.~L.~Eftang and A.~T.~Patera},
  title = {{A port-reduced static condensation reduced basis element method for large component-synthesized structures: approximation and a posteriori error estimation}},
  journal = {Advanced Modeling and Simulation in Engineering Sciences},
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[33] I. D. Neveln, R. Bale, A. P. S. Bhalla, O. M. Curet, N. A. Patankar, and M. A. Maciver. Undulating fins produce off-axis thrust and flow structures. The Journal of Experimental Biology, 217(2):201-213, 2014. http://dx.doi.org/10.1242/jeb.091520.
@article{Neveln_2014,
  author = {I.~D.~Neveln and R.~Bale and A.~P.~S.~Bhalla and O.~M.~Curet and N.~A.~Patankar and M.~A.~Maciver},
  title = {{Undulating fins produce off-axis thrust and flow structures}},
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  year = 2014,
  volume = 217,
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  note = {\url{http://dx.doi.org/10.1242/jeb.091520}}
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[34] M. R. Tonks, Y. Zhang, X. Bai, and P. C. Millett. Demonstrating the temperature gradient impact on grain growth in UO2 using the phase field method. Materials Research Letters, 2(1):23-28, 2014. http://dx.doi.org/10.1080/21663831.2013.849300.
@article{Tonks_2014,
  author = {M.~R.~Tonks and Y.~Zhang and X.~Bai and P.~C.~Millett},
  title = {{Demonstrating the temperature gradient impact on grain growth in UO$_2$ using the phase field method}},
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[35] M. Teague, M. Tonks, S. Novascone, and S. Hayes. Microstructural modeling of thermal conductivity of high burn-up mixed oxide fuel. Journal of Nuclear Materials, 444(1-3):161-169, 2014. http://dx.doi.org/10.1016/j.jnucmat.2013.09.035.
@article{Teague_2014,
  author = {M.~Teague and M.~Tonks and S.~Novascone and S.~Hayes},
  title = {{Microstructural modeling of thermal conductivity of high burn-up mixed oxide fuel}},
  journal = {Journal of Nuclear Materials},
  year = 2014,
  volume = 444,
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  note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2013.09.035}}
}

2013

[1] X. S. Ma, H. Gao, N. Qi, C. Berry, B. E. Griffith, and X. Y. Luo. Image-based immersed boundary/finite element model of the human mitral valve. In P. Nithiarasu, R. Löhner, and K. M. Liew, editors, Proceedings of the Third International Conference on Computational & Mathematical Biomedical Engineering (CMBE13), December 16-18, 2013. http://www.compbiomed.net/2013.
@inproceedings{Ma_2013,
  author = {X.~S.~Ma and H.~Gao and N.~Qi and C.~Berry and B.~E.~Griffith and X.~Y.~Luo},
  title = {{Image-based immersed boundary/finite element model of the human mitral valve}},
  booktitle = {{Proceedings of the Third International Conference on Computational \& Mathematical Biomedical Engineering (CMBE13)}},
  editor = {P.~Nithiarasu and R.~L\"{o}hner and K.~M.~Liew},
  month = dec # {~16--18,},
  year = {2013},
  note = {\url{http://www.compbiomed.net/2013}}
}
[2] V. Flamini, A. DeAnda, and B. E. Griffith. Simulating the effects of intersubject variability in aortic root compliance by the immersed boundary method. In P. Nithiarasu, R. Löhner, and K. M. Liew, editors, Proceedings of the Third International Conference on Computational & Mathematical Biomedical Engineering (CMBE13), December 16-18, 2013. http://www.compbiomed.net/2013.
@inproceedings{Flamini_2013,
  author = {V.~Flamini and A.~DeAnda and B.~E.~Griffith},
  title = {{Simulating the effects of intersubject variability in aortic root compliance by the immersed boundary method}},
  booktitle = {{Proceedings of the Third International Conference on Computational \& Mathematical Biomedical Engineering (CMBE13)}},
  editor = {P.~Nithiarasu and R.~L\"{o}hner and K.~M.~Liew},
  month = dec # {~16--18,},
  year = {2013},
  note = {\url{http://www.compbiomed.net/2013}}
}
[3] B. E. Griffith, V. Flamini, A. DeAnda, and L. Scotten. Simulating the dynamics of an aortic valve prosthesis in a pulse duplicator: Numerical methods and initial experience. Journal of Medical Devices, 7(4):040912, December 2013. http://dx.doi.org/10.1115/1.4025768.
@article{Griffith_2013,
  author = {B.~E.~Griffith and V.~Flamini and A.~DeAnda and L.~Scotten},
  title = {{Simulating the dynamics of an aortic valve prosthesis in a pulse duplicator: Numerical methods and initial experience}},
  journal = {Journal of Medical Devices},
  month = dec,
  year = 2013,
  volume = 7,
  number = 4,
  pages = {040912},
  note = {\url{http://dx.doi.org/10.1115/1.4025768}}
}
[4] P. Rong, O. von Estorff, L. Nagler, and M. Schanz. A finite element plate formulation for the acoustical investigation of thin air layers. J. Computational Acoustics, 21(4):1350014 (14 pages), December 2013. http://dx.doi.org/10.1142/S0218396X13500148.
@article{Rong_2013,
  author = {P.~Rong and O.~von Estorff and L.~Nagler and M.~Schanz},
  title = {{A finite element plate formulation for the acoustical investigation of thin air layers}},
  journal = {J.~Computational Acoustics},
  year = 2013,
  volume = 21,
  number = 4,
  month = dec,
  pages = {1350014 (14 pages)},
  note = {\url{http://dx.doi.org/10.1142/S0218396X13500148}}
}
[5] D. Fuentes, J. T. Oden, K. R. Diller, J. Yung, Y. Feng, J. D. Hazle, A. Shetty, and R. J. Stafford. Computational and MR-guided patient-specific laser induced thermal therapy of cancer. Technical Report 13-33, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, December 2013. https://www.ices.utexas.edu/media/reports/2013/1333.pdf.
@techreport{Fuentes_2013b,
  author = {D.~Fuentes and J.~T.~Oden and K.~R.~Diller and J.~Yung and Y.~Feng and J.~D.~Hazle and A.~Shetty and R.~J.~Stafford},
  title = {{Computational and MR-guided patient-specific laser induced thermal therapy of cancer}},
  institution = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  year = 2013,
  month = dec,
  number = {13-33},
  note = {\url{https://www.ices.utexas.edu/media/reports/2013/1333.pdf}}
}
[6] A. L. Rossa and A. L. G. A. Coutinho. Parallel adaptive simulation of gravity currents on the lock-exchange problem. Computers & Fluids, 88:782-794, December 2013. http://dx.doi.org/10.1016/j.compfluid.2013.06.008.
@article{Rossa_2013,
  author = {A.~L.~Rossa and A.~L.~G.~A.~Coutinho},
  title = {{Parallel adaptive simulation of gravity currents on the lock-exchange problem}},
  journal = {Computers \& Fluids},
  year = 2013,
  month = dec,
  volume = 88,
  pages = {782--794},
  note = {\url{http://dx.doi.org/10.1016/j.compfluid.2013.06.008}}
}
[7] P. Rong, M. Abele, and O. von Estorff. Comparison of different methods for simulating acoustic diffuse field excitations. Acta Acustica united with Acustica, 99(6):931-939, December 2013. http://dx.doi.org/10.3813/AAA.918672.
@article{Rong_2013b,
  author = {P.~Rong and M.~Abele and O.~von Estorff},
  title = {{Comparison of different methods for simulating acoustic diffuse field excitations}},
  journal = {Acta Acustica united with Acustica},
  year = 2013,
  volume = 99,
  number = 6,
  month = dec,
  pages = {931--939},
  note = {\url{http://dx.doi.org/10.3813/AAA.918672}}
}
[8] L. Botti, K. Canneyt, R. Kaminsky, T. Claessens, R. N. Planken, P. Verdonck, A. Remuzzi, and L. Antiga. Numerical evaluation and experimental validation of pressure drops across a patient-specific model of vascular access for hemodialysis. Cardiovascular Engineering and Technology, 4(4):485-499, December 2013. http://dx.doi.org/10.1007/s13239-013-0162-6.
@article{Botti_2013,
  author = {L.~Botti and K.~Canneyt and R.~Kaminsky and T.~Claessens and R.~N.~Planken and P.~Verdonck and A.~Remuzzi and L.~Antiga},
  title = {{Numerical evaluation and experimental validation of pressure drops across a patient-specific model of vascular access for hemodialysis}},
  journal = {Cardiovascular Engineering and Technology},
  year = 2013,
  month = dec,
  volume = {4},
  number = {4},
  pages = {485--499},
  note = {\url{http://dx.doi.org/10.1007/s13239-013-0162-6}}
}
[9] V. Vavourakis, D. Loukidis, D. C. Charmpis, and P. Papanastasiou. A robust finite element approach for large deformation elastoplastic plane-strain problems. Finite Elements in Analysis and Design, 77:1-15, December 2013. http://dx.doi.org/10.1016/j.finel.2013.08.003.
@article{Vavourakis_2013b,
  author = {V.~Vavourakis and D.~Loukidis and D.~C.~Charmpis and P.~Papanastasiou},
  title = {{A robust finite element approach for large deformation elastoplastic plane-strain problems}},
  journal = {Finite Elements in Analysis and Design},
  year = 2013,
  volume = 77,
  month = dec,
  pages = {1--15},
  note = {\url{http://dx.doi.org/10.1016/j.finel.2013.08.003}}
}
[10] D. M. Perez, R. L. Williamson, S. R. Novascone, G. Pastore, J. D. Hales, and B. W. Spencer. Assessment of BISON: A nuclear fuel performance analysis code. Technical Report INL/MIS-13-30314, Idaho National Laboratory, November 2013. https://inlportal.inl.gov/portal/server.pt/gateway/PTARGS_0_2_140864_0_0_18/BISON_assessment_document_2013%2520copy.pdf.
@techreport{Perez_2013b,
  author = {D.~M.~Perez and R.~L.~Williamson and S.~R.~Novascone and G.~Pastore and J.~D.~Hales and B.~W.~Spencer},
  title = {{Assessment of BISON: A nuclear fuel performance analysis code}},
  institution = {Idaho National Laboratory},
  month = nov,
  year = {2013},
  number = {INL/MIS-13-30314},
  note = {\url{https://inlportal.inl.gov/portal/server.pt/gateway/PTARGS_0_2_140864_0_0_18/BISON_assessment_document_2013%2520copy.pdf}}
}
[11] D. R. Gaston, J. W. Peterson, C. J. Permann, D. Andrs, A. E. Slaughter, and J. M. Miller. Continuous integration for concurrent computational framework and application development. In First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE), In Conjunction with SC13, Denver, CO, November 2013. http://dx.doi.org/10.6084/m9.figshare.790755.
@inproceedings{Gaston_2013b,
  author = {D.~R.~Gaston and J.~W.~Peterson and C.~J.~Permann and D.~Andrs and A.~E.~Slaughter and J.~M.~Miller},
  title = {{Continuous integration for concurrent computational framework and application development}},
  booktitle = {{First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE), In Conjunction with SC13, Denver, CO}},
  month = nov,
  year = {2013},
  note = {\url{http://dx.doi.org/10.6084/m9.figshare.790755}}
}
[12] R. P. Widmer Soyka, A. López, C. Persson, L. Cristofolini, and S. J. Ferguson. Numerical description and experimental validation of a rheology model for non-Newtonian fluid flow in cancellous bone. Journal of the Mechanical Behavior of Biomedical Materials, 27:43-53, November 2013. http://dx.doi.org/10.1016/j.jmbbm.2013.06.007.
@article{Widmer_2013b,
  author = {R.~P.~Widmer Soyka and A.~L\'{o}pez and C.~Persson and L.~Cristofolini and S.~J.~Ferguson},
  title = {{Numerical description and experimental validation of a rheology model for non-Newtonian fluid flow in cancellous bone}},
  journal = {Journal of the Mechanical Behavior of Biomedical Materials},
  year = 2013,
  volume = 27,
  month = nov,
  pages = {43--53},
  note = {\url{http://dx.doi.org/10.1016/j.jmbbm.2013.06.007}}
}
[13] J. D. Hales, R. L. Williamson, S. R. Novascone, D. M. Perez, B. W. Spencer, and G. Pastore. Multidimensional multiphysics simulation of TRISO particle fuel. Journal of Nuclear Materials, 443(1-3):531-543, November 2013. http://dx.doi.org/10.1016/j.jnucmat.2013.07.070.
@article{Hales_2013b,
  author = {J.~D.~Hales and R.~L.~Williamson and S.~R.~Novascone and D.~M.~Perez and B.~W.~Spencer and G.~Pastore},
  title = {{Multidimensional multiphysics simulation of TRISO particle fuel}},
  journal = {Journal of Nuclear Materials},
  year = 2013,
  volume = 443,
  number = {1--3},
  month = nov,
  pages = {531--543},
  note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2013.07.070}}
}
[14] A. Günther, H. Lamecker, and M. Weiser. Flexible shape matching with finite element based LDDMM. International Journal of Computer Vision, 105(2):128-143, November 2013. http://dx.doi.org/10.1007/s11263-012-0599-3.
@article{Gunther_2013,
  author = {A.~G\"{u}nther and H.~Lamecker and M.~Weiser},
  title = {{Flexible shape matching with finite element based LDDMM}},
  journal = {International Journal of Computer Vision},
  volume = 105,
  number = 2,
  pages = {128--143},
  month = nov,
  year = 2013,
  note = {\url{http://dx.doi.org/10.1007/s11263-012-0599-3}}
}
[15] J. D. Hales, S. R. Novascone, G. Pastore, D. M. Perez, B. W. Spencer, and R. L. Williamson. BISON Theory Manual: The Equations Behind Nuclear Fuel Analysis. Technical Report INL/EXT-13-29930, Idaho National Laboratory, October 2013. http://www.inl.gov/technicalpublications/Documents/5842314.pdf.
@techreport{Hales_2013c,
  author = {J.~D.~Hales and S.~R.~Novascone and G.~Pastore and D.~M.~Perez and B.~W.~Spencer and R.~L.~Williamson},
  title = {{BISON Theory Manual: The Equations Behind Nuclear Fuel Analysis}},
  institution = {Idaho National Laboratory},
  month = oct,
  year = {2013},
  number = {INL/EXT-13-29930},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/5842314.pdf}}
}
[16] J. Biermann and O. von Estorff. Higher order finite and infinite acoustical elements based on ultraspherical polynomials. Acta Acustica united with Acustica, 99(5):759-769, September/October 2013. http://dx.doi.org/10.3813/AAA.918654.
@article{Biermann_2013,
  author = {J.~Biermann and O.~von Estorff},
  title = {{Higher order finite and infinite acoustical elements based on ultraspherical polynomials}},
  journal = {Acta Acustica united with Acustica},
  month = sep # {/} # oct,
  year = 2013,
  volume = 99,
  number = 5,
  pages = {759--769},
  note = {\url{http://dx.doi.org/10.3813/AAA.918654}}
}
[17] Y. Li, S. Hu, and X. Sun. Report on the Implementation of the Homogeneous Nucleation Scheme in MARMOT-based Phase Field Simulations. Technical Report PNNL-22829, Pacific Northwest National Laboratory, September 2013. http://www.pnnl.gov/main/publications/external/technical_reports/PNNL-22829.pdf.
@techreport{Li_2013,
  author = {Y.~Li and S.~Hu and X.~Sun},
  title = {{Report on the Implementation of the Homogeneous Nucleation Scheme in MARMOT-based Phase Field Simulations}},
  institution = {Pacific Northwest National Laboratory},
  month = sep,
  year = {2013},
  number = {PNNL-22829},
  note = {\url{http://www.pnnl.gov/main/publications/external/technical_reports/PNNL-22829.pdf}}
}
[18] L. P. Swiler, D. Mandelli, C. Rabiti, and A. Alfonsi. DAKOTA Reliability Methods applied to RAVEN/RELAP-7. Technical Report SAND2013-8439, Sandia National Laboratory, September 2013. http://prod.sandia.gov/techlib/access-control.cgi/2013/138439.pdf.
@techreport{Swiler_2013c,
  author = {L.~P.~Swiler and D.~Mandelli and C.~Rabiti and A.~Alfonsi},
  title = {{DAKOTA Reliability Methods applied to RAVEN/RELAP-7}},
  institution = {Sandia National Laboratory},
  month = sep,
  year = {2013},
  number = {SAND2013-8439},
  note = {\url{http://prod.sandia.gov/techlib/access-control.cgi/2013/138439.pdf}}
}
[19] P. Medvedev. Summary Report on the Fuel Performance Modeling of the AFC-2A, 2B Irradiation Experiments. Technical Report INL/EXT-13-30006, Idaho National Laboratory, September 2013. http://www.inl.gov/technicalpublications/Documents/5864449.pdf.
@techreport{Medvedev_2013,
  author = {P.~Medvedev},
  title = {{Summary Report on the Fuel Performance Modeling of the AFC-2A, 2B Irradiation Experiments}},
  institution = {Idaho National Laboratory},
  month = sep,
  year = {2013},
  number = {INL/EXT-13-30006},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/5864449.pdf}}
}
[20] R. Hu, J. W. Thomas, E. Munkhzul, T. H. Fanning, H. Zhang, and R. Martineau. Development of SFR Primary System Simulation Capability for Advanced System Codes. Technical Report ANL/NE-13/11, Argonne National Laboratory, September 2013. http://www.ipd.anl.gov/anlpubs/2014/01/77535.pdf, http://dx.doi.org/10.2172/1121040.
@techreport{Hu_2013b,
  author = {R.~Hu and J.~W.~Thomas and E.~Munkhzul and T.~H.~Fanning and H.~Zhang and R.~Martineau},
  title = {{Development of SFR Primary System Simulation Capability for Advanced System Codes}},
  institution = {Argonne National Laboratory},
  day = {30},
  month = sep,
  year = {2013},
  number = {ANL/NE-13/11},
  note = {\url{http://www.ipd.anl.gov/anlpubs/2014/01/77535.pdf}, \url{http://dx.doi.org/10.2172/1121040}}
}
[21] S. R. Novascone, B. W. Spencer, and J. D. Hales. Light Water Reactor Sustainability Program: Status Report on the Grizzly Code Enhancements. Technical Report INL/EXT-13-30315, Idaho National Laboratory, September 2013. http://www.inl.gov/technicalpublications/Documents/5872011.pdf.
@techreport{Novascone_2013b,
  author = {S.~R.~Novascone and B.~W.~Spencer and J.~D.~Hales},
  title = {{Light Water Reactor Sustainability Program: Status Report on the Grizzly Code Enhancements}},
  institution = {Idaho National Laboratory},
  month = sep,
  year = {2013},
  number = {INL/EXT-13-30315},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/5872011.pdf}}
}
[22] E. Barker, D. Li, H. Zbib, and X. Sun. Gradient plasticity model and its implementation into MARMOT. Technical Report PNNL-22702, Pacific Northwest National Laboratory, August 2013. http://www.pnnl.gov/main/publications/external/technical_reports/pnnl-22702.pdf.
@techreport{Barker_2013,
  author = {E.~Barker and D.~Li and H.~Zbib and X.~Sun},
  title = {{Gradient plasticity model and its implementation into MARMOT}},
  institution = {Pacific Northwest National Laboratory},
  month = aug,
  year = {2013},
  number = {PNNL-22702},
  note = {\url{http://www.pnnl.gov/main/publications/external/technical_reports/pnnl-22702.pdf}}
}
[23] J. D. Hales, M. R. Tonks, K. Chockalingam, D. M. Perez, S. R. Novascone, B. W. Spencer, and R. L. Williamson. Multiscale Nuclear Fuel Analysis via Asymptotic Expansion Homogenization. Technical Report INL/CON-12-27165, Idaho National Laboratory, August 2013. http://www.inl.gov/technicalpublications/Documents/5842301.pdf, also appeared in: Transactions, SMiRT-22, San Francisco, CA, USA, August 18-23, 2013, Division III.
@techreport{Hales_2013d,
  author = {J.~D.~Hales and M.~R.~Tonks and K.~Chockalingam and D.~M.~Perez and S.~R.~Novascone and B.~W.~Spencer and R.~L.~Williamson},
  title = {{Multiscale Nuclear Fuel Analysis via Asymptotic Expansion Homogenization}},
  institution = {Idaho National Laboratory},
  month = aug,
  year = {2013},
  number = {INL/CON-12-27165},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/5842301.pdf},
                 also appeared in: Transactions, SMiRT-22, San Francisco, CA, USA, August 18-23, 2013, Division III}
}
[24] S. R. Novascone, B. W. Spencer, R. L. Williamson, D. Andrs, J. D. Hales, and D. M. Perez. A comparison of thermomechanics coupling strategies in fuel pin and pressure vessel simulations. Technical Report INL/CON-12-27510, Idaho National Laboratory, August 2013. http://www.inl.gov/technicalpublications/Documents/5842302.pdf, also appeared in: Transactions, SMiRT-22, San Francisco, CA, USA, August 18-23, 2013, Division III.
@techreport{Novascone_2013c,
  author = {S.~R.~Novascone and B.~W.~Spencer and R.~L.~Williamson and D.~Andrs and J.~D.~Hales and D.~M.~Perez},
  title = {{A comparison of thermomechanics coupling strategies in fuel pin and pressure vessel simulations}},
  institution = {Idaho National Laboratory},
  month = aug,
  year = {2013},
  number = {INL/CON-12-27510},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/5842302.pdf},
                 also appeared in: Transactions, SMiRT-22, San Francisco, CA, USA, August 18-23, 2013, Division III}
}
[25] J. A. Fike. Construction of reduced order models for the non-linear Navier-Stokes equations using the Proper Orthogonal Decomposition (POD)/Galerkin method. Technical Report SAND2013-7051, Sandia National Laboratories, August 2013. http://prod.sandia.gov/techlib/access-control.cgi/2013/137051.pdf.
@techreport{Fike_2013,
  author = {J.~A.~Fike},
  title = {{Construction of reduced order models for the non-linear Navier-Stokes
                  equations using the Proper Orthogonal Decomposition (POD)/Galerkin method}},
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2012

[1] D. K. Francis, J. Deang, R. S. Florea, D. R. Gaston, N. Lee, S. Nouranian, C. J. Permann, J. Rudd, D. Seely, W. R. Whittington, and M. F. Horstemeyer. Characterization and failure analysis of a polymeric clamp hanger component. Engineering Failure Analysis, 26:230-239, December 2012. http://dx.doi.org/10.1016/j.engfailanal.2012.07.020.
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[2] T. Sumner, R. Hu, and T. H. Fanning. Verification test suite for systems analysis tools. Technical Report ANL/NE-12/61, Argonne National Laboratory, December 2012. http://www.ipd.anl.gov/anlpubs/2013/02/75298.pdf.
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  title = {{Verification test suite for systems analysis tools}},
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[3] J. D. Galloway, N. N. Carlson, and C. Unal. BISON framework for the analysis of performance of metallic fuels. Technical Report LA-UR-12-26297, Los Alamos National Laboratory, December 2012. http://www.osti.gov/bridge/purl.cover.jsp?purl=/1055254/.
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  title = {{BISON framework for the analysis of performance of metallic fuels}},
  institution = {Los Alamos National Laboratory},
  month = dec,
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  number = {LA-UR-12-26297},
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  title = {{A note on the implementation of an interior-point algorithm for nonlinear
              optimization with inexact step computations}},
  month = dec,
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  pages = {209--227},
  volume = {136},
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  note = {\url{http://dx.doi.org/10.1007/s10107-012-0557-4}},
  journal = {Mathematical Programming, Ser.\ B}
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              advective-diffusive transport using stabilized FEM formulation}},
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[6] S. Oliveira, A.-M. Toader, and P. Vieira. Damage identification in a concrete dam by fitting measured modal parameters. Nonlinear Analysis: Real World Applications, 13(6):2888-2899, December 2012. http://dx.doi.org/10.1016/j.nonrwa.2012.05.003.
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  title = {{Damage identification in a concrete dam by fitting measured modal parameters}},
  journal = {Nonlinear Analysis: Real World Applications},
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[7] P.-Y. Trépanier, I. Fortin, C. Lambert, and F. Lacroix. A Monte Carlo based formalism to identify potential locations at high risk of tumor recurrence with a numerical model for glioblastoma multiforme. Medical Physics, 39(11):6682-6691, November 2012. http://dx.doi.org/10.1118/1.4757972.
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              tumor recurrence with a numerical model for glioblastoma multiforme}},
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[8] K. T. Clarno et al. The AMP (Advanced MultiPhysics) nuclear fuel performance code. Nuclear Engineering and Design, 252:108-120, November 2012. http://dx.doi.org/10.1016/j.nucengdes.2012.07.018.
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  title = {{The AMP (Advanced MultiPhysics) nuclear fuel performance code}},
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[9] B. Amaziane, M. Jurak, and A. Keko. Numerical simulations of water-gas flow in heterogeneous porous media with discontinuous capillary pressures by the concept of the global pressure. Journal of Computational and Applied Mathematics, 236(17):4227-4244, November 2012. http://dx.doi.org/10.1016/j.cam.2012.05.013.
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              porous media with discontinuous capillary pressures by
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  title = {{Assessing the effect of parametric uncertainty on the FRAPCON-3.4 thermal conductivity model}},
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  month = oct,
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  title = {{Initial coupling of the RELAP-7 and PRONGHORN applications}},
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[12] M. P. Short. Effects of fluid flow on 2D and 3D coupled microscale simulations of porous boiling deposits (CRUD) in PWRs. In 9th International Topical Meeting on Nuclear Thermal-Hydraulics, Operation and Safety (NUTHOS-9), Kaohsiung, Taiwan, September 9-13, 2012. http://web.mit.edu/hereiam/Public/Andrew/NUTHOS-CRUD-Paper.docx.
@inproceedings{Short_2012,
  author = {M.~P.~Short},
  title = {{Effects of fluid flow on 2D and 3D coupled microscale simulations of porous boiling deposits (CRUD) in PWRs}},
  booktitle = {{9th International Topical Meeting on Nuclear Thermal-Hydraulics, Operation and Safety (NUTHOS-9), Kaohsiung, Taiwan}},
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[13] P. Medvedev. Fuel performance modeling results for representative FCRD irradtiation experiments: projected deformation in the annular AFC-3A U-10Zr fuel pins and comparison to alternative designs. Technical Report INL/EXT-12-27183, Idaho National Laboratory, September 2012. http://www.inl.gov/technicalpublications/Documents/5753426.pdf.
@techreport{Medvedev_2012,
  author = {P.~Medvedev},
  title = {{Fuel performance modeling results for representative FCRD irradtiation experiments:
                  projected deformation in the annular AFC-3A U-10Zr fuel pins and comparison to alternative designs}},
  institution = {Idaho National Laboratory},
  month = sep,
  year = {2012},
  number = {INL/EXT-12-27183},
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  title = {{Flux evaluation in primal and dual boundary-coupled problems}},
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}

2011

[1] A.-L. Gerner and K. Veroy. Certified reduced basis method for parameterized saddle point problems. Technical Report AICES-2011/11-01, Aachen Institute for Advanced Study in Computational Engineering Science, November 2011. http://www.aices.rwth-aachen.de:8080/aices/preprint/documents/AICES-2011-11-01.pdf.
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  author = {A.-L.~Gerner and K.~Veroy},
  title = {{Certified reduced basis method for parameterized saddle point problems}},
  institution = {Aachen Institute for Advanced Study in Computational Engineering Science},
  day = {4},
  month = nov,
  year = {2011},
  number = {AICES-2011/11-01},
  note = {\url{http://www.aices.rwth-aachen.de:8080/aices/preprint/documents/AICES-2011-11-01.pdf}}
}
[2] R. Bordas, K. Gillow, Q. Lou, I. R. Efimov, D. Gavaghan, P. Kohl, V. Grau, and B. Rodriguez. Rabbit-specific ventricular model of cardiac electrophysiological function including specialized conduction system. Progress in Biophysics and Molecular Biology, 107(1):90-100, October 2011. http://dx.doi.org/10.1016/j.pbiomolbio.2011.05.002.
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[3] V. V. Garg, S. Prudhomme, K. G. van der Zee, and G. F. Carey. Adjoint consistent formulations of slip models for coupled electroosmotic flow systems. Technical Report 11-30, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, October 2011. http://django.ices.utexas.edu/media/reports/2011/1130.pdf.
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}
[4] A. Corsini, F. Rispoli, and E. Tuccimei. Development of air turbines for small power OWC plants. In Proceedings of the 9th European Wave and Tidal Energy Conference (EWTEC), September 5-9 2011. https://www.see.ed.ac.uk/~shs/Tidal%20Stream/EWTEC%202011%20full/EWTEC_CD/papers/322.pdf.
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  title = {{Development of air turbines for small power OWC plants}},
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[5] A. Günther, H. Lamecker, and M. Weiser. Direct LDDMM of Discrete Currents with Adaptive Finite Elements. In X. Pennec, S. Joshi, and M. Nielsen, editors, Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability, pages 1-14, September 2011. http://hal.inria.fr/docs/00/62/38/15/PDF/MFCA11_1_1.pdf.
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  title = {{Direct LDDMM of Discrete Currents with Adaptive Finite Elements}},
  booktitle = {{Proceedings of the Third International Workshop on Mathematical Foundations of Computational
                 Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability}},
  editor = {X.~Pennec and S.~Joshi and M.~Nielsen},
  pages = {1--14},
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[7] S. Berrone and M. Verani. A new marking strategy for the adaptive finite element approximation of optimal control constrained problems. Optimization Methods and Software, Special Issue: Advances in Shape and Topology Optimization: Theory, Numerics and New Application Areas, 26(4-5):747-775, August-October 2011. http://dx.doi.org/10.1080/10556788.2010.491866.
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  year = 2011,
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  title = {{A comparison of computational methods to determine the permeability of vertebral trabecular bone}},
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[10] E. H. van Brummelen, K. G. van der Zee, V. V. Garg, and S. Prudhomme. Flux evaluation in primal and dual boundary-coupled problems. Technical Report 11-22, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, July 2011. http://www.ices.utexas.edu/media/reports/2011/1122.pdf.
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  author = {E.~H.~van~Brummelen and K.~G.~van~der~Zee and V.~V.~Garg and S.~Prudhomme},
  title = {{Flux evaluation in primal and dual boundary-coupled problems}},
  institution = {Centre for Analysis, Scientific computing and Applications (CASA), Dept.\ of Mathematics and Computer Science, Eindhoven University of Technology},
  month = jul,
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[14] P. Bauman, J. Jagodzinski, and B. S. Kirk. Statistical calibration of thermocouple gauges used for inferring heat flux. In 42nd AIAA Thermophysics Conference, Fluid Dynamics and Co-located Conferences, June 27-30, 2011. http://dx.doi.org/10.2514/6.2011-3779.
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[21] M. Auf der Maur, G. Penazzi, G. Romano, F. Sacconi, A. Pecchia, and A. Di Carlo. The multiscale paradigm in electronic device simulation. IEEE Transactions on Electron Devices, 58(5):1425-1432, May 2011. http://dx.doi.org/10.1109/TED.2011.2114666.
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[1] M. Burtscher, B.-D. Kim, J. Diamond, J. McCalpin, L. Koesterke, and J. Browne. PerfExpert: An easy-to-use performance diagnosis tool for HPC applications. In 2010 International Conference for High Performance Computing, Networking, Storage and Analysis (SC), pages 1-11, November 13-19, 2010. http://dx.doi.org/10.1109/SC.2010.41.
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[2] B. S. Kirk. Adiabatic shock capturing in perfect gas hypersonic flows. International Journal for Numerical Methods in Fluids, 64(9):1041-1062, November 2010. http://dx.doi.org/10.1002/fld.2195.
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[3] D. Fuentes, R. Cardan, R. J. Stafford, J. Yung, G. D. Dodd III, and Y. Feng. High-fidelity computer models for prospective treatment planning of radiofrequency ablation with in vitro experimental correlation. Journal of Vascular and Interventional Radiology, 21(11):1725-1732, November 2010. http://dx.doi.org/10.1016/j.jvir.2010.07.022.
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  title = {High-fidelity Computer Models for Prospective Treatment Planning
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[4] L. Nagler and M. Schanz. An extendable poroelastic plate formulation in dynamics. Archive of Applied Mechanics, 80:1177-1195, October 2010. http://dx.doi.org/10.1007/s00419-010-0429-4.
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  title = {{An extendable poroelastic plate formulation in dynamics}},
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[5] J. Brown. Efficient Nonlinear Solvers for Nodal High-Order Finite Elements in 3D. Journal of Scientific Computing, 45:48-63, October 2010. http://dx.doi.org/10.1007/s10915-010-9396-8.
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  title = {{Efficient Nonlinear Solvers for Nodal High-Order Finite Elements in 3D}},
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  issue = {1--3},
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[6] S. Wang, E. De Sturler, and G. H. Paulino. Dynamic adaptive mesh refinement for topology optimization. ArXiv e-prints, September 25, 2010. http://arxiv.org/abs/1009.4975.
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  title = {{Dynamic adaptive mesh refinement for topology optimization}},
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[7] S. Oliveira, A.-M. Toader, and P. Vieira. Finding the elastic coefficients of a damaged zone in a concrete dam using material optimization to fit measured modal parameters. In Proceedings of the 2nd International Conference on Engineering Optimization, Lisbon, Portugal, September 6-9, 2010. http://lemac1.dem.ist.utl.pt/engopt2010/Book_and_CD/Papers_CD_Final_Version/pdf/12/01122-01.pdf.
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  author = {S.~Oliveira and A.-M.~Toader and P.~Vieira},
  title = {Finding the elastic coefficients of a damaged zone in
  a concrete dam using material optimization to fit measured modal parameters},
  booktitle = {{Proceedings of the 2nd International Conference on
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  address = {Lisbon, Portugal},
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[8] J. Ragusa, A. Siegel, and J.-M. Ruggieri. Neutronic/Thermalhydraulic Coupling Techniques for Sodium Cooled Fast Reactor Simulations. Technical Report 14837, Department of Energy, September 2010. http://dx.doi.org/10.2172/992636.
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[9] Y. Lu, B. Zhu, H. Shen, J. C. Rasmussen, G. Wang, and E. M. Sevick-Muraca. A parallel adaptive finite element simplified spherical harmonics approximation solver for frequency domain fluorescence molecular imaging. Physics in Medicine and Biology, 55(16):4625-4645, August 2010. http://dx.doi.org/10.1088/0031-9155/55/16/002.
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[10] F. H. Pereira and S. I. Nabeta. Wavelet-based algebraic multigrid method using the lifting technique. Journal of Microwaves, Optoelectronics, and Electromagnetic Applications, 9(1):1-9, June 2010. http://www.sel.eesc.usp.br/jmo/issues/vol_9/v9_n1/v9_n1_paper_pdf/regular/v9n1a1.pdf.
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[11] B. S. Kirk and G. F. Carey. Validation of Fully Implicit, Parallel Finite Element Simulations of Laminar Hypersonic Flows. AIAA Journal, 48(6):1025-1036, June 2010. http://dx.doi.org/10.2514/1.40860.
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  author = {B.~S.~Kirk and G.~F.~Carey},
  title = {{Validation of Fully Implicit, Parallel Finite Element Simulations of Laminar Hypersonic Flows}},
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[12] A. Pecchia. Transport at the nanoscale: integration of micro-macro scales for electrothermal device simulations. Technical Report A029035, Grant No: FA8655-08-1-3017, University of Rome, “Tor Vergata”, May 2010. http://www.dtic.mil/cgi-bin/GetTRDoc?Location=U2&doc=GetTRDoc.pdf&AD=ADA530920, http://dodreports.com/pdf/ada530920.pdf.
@techreport{Pecchia_2010,
  author = {A.~Pecchia},
  title = {{Transport at the nanoscale: integration of micro-macro
                  scales for electrothermal device simulations}},
  institution = {University of Rome, ``Tor Vergata''},
  day = 27,
  month = may,
  year = {2010},
  number = {A029035, Grant No: FA8655-08-1-3017},
  note = {\url{http://www.dtic.mil/cgi-bin/GetTRDoc?
                      Location=U2&doc=GetTRDoc.pdf&AD=ADA530920}, \url{http://dodreports.com/pdf/ada530920.pdf}}
}
[13] D. Fuentes, Y. Feng, A. Elliott, A. Shetty, R. J. McNichols, J. T. Oden, and R. J. Stafford. Adaptive Real-Time Bioheat Transfer Models for Computer Driven MR-guided Laser Induced Thermal Therapy. IEEE Trans. Biomed. Eng., 57(5):1024-1030, May 2010. http://www.ncbi.nlm.nih.gov/pubmed/20142153.
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  title = {{Adaptive Real-Time Bioheat Transfer Models for
   Computer Driven MR-guided Laser Induced Thermal Therapy}},
  journal = {{IEEE Trans. Biomed. Eng.}},
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[14] S. Berrone. Skipping transition conditions in a posteriori error estimates for finite element discretizations of parabolic equations. Mathematical Modelling and Numerical Analysis (M2AN), 44(3):455-484, May 2010. http://dx.doi.org/10.1051/m2an/2010009.
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estimates for finite element discretizations of parabolic equations}},
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[15] Y. Zhu, X. Y. Luo, and R. W. Ogden. Nonlinear axisymmetric deformations of an elastic tube under external pressure. European Journal of Mechanics - A/Solids, 29(2):216-229, March-April 2010. http://dx.doi.org/10.1016/j.euromechsol.2009.10.004.
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[16] M. Burtscher, B. Kim, J. Diamond, J. McCalpin, L. Koesterke, and J. Browne. PerfExpert: An automated HPC performance measurement and analysis tool with optimization recommendations. Technical Report 10-04, Institute for Computational Engineering and Sciences (ICES), February 2010. http://www.ices.utexas.edu/media/reports/2010/1004.pdf.
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}
[17] R. Podgorney, H. Huang, and D. Gaston. Massively parallel fully coupled implicit modeling of coupled thermal-hydrological-mechanical processes for enhanced geothermal system reservoirs. In Proceedings of the 35th Workshop on Geothermal Reservoir Engineering. Stanford University, February 2010. http://pangea.stanford.edu/ERE/pdf/IGAstandard/SGW/2010/podgorne.pdf.
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[18] M. Tonks, D. Gaston, C. Permann, P. Millett, G. Hansen, and D. Wolf. A coupling methodology for mesoscale-informed nuclear fuel performance codes. Nuclear Engineering and Design, 240(10):2877-2883, 2010. http://dx.doi.org/10.1016/j.nucengdes.2010.06.005.
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}
[24] L. Botti, M. Piccinelli, B. Ene-Iordache, A. Remuzzi, and L. Antiga. An adaptive mesh refinement solver for large-scale simulation of biological flows. International Journal for Numerical Methods in Biomedical Engineering, 26(1):86-100, 2010. http://dx.doi.org/10.1002/cnm.1257.
@article{Botti_2010,
  author = {L.~Botti and M.~Piccinelli and B.~Ene-Iordache and A.~Remuzzi and L.~Antiga},
  title = {{An adaptive mesh refinement solver for large-scale simulation of biological flows}},
  journal = {International Journal for Numerical Methods in Biomedical Engineering},
  year = 2010,
  volume = 26,
  number = 1,
  pages = {86--100},
  note = {\url{http://dx.doi.org/10.1002/cnm.1257}}
}

2009

[1] P. Prouzet, M. Odunlami, E. Duquesne, and A. Boussouar. Analysis and visualization of the glass eel behavior (Anguilla anguilla) in the Adour estuary and estimate of its upstream migration speed. Aquatic Living Resources, 22(4):525-534, December 2009. http://dx.doi.org/10.1051/alr/2009041.
@article{Prouet_2009,
  author = {P.~Prouzet and M.~Odunlami and E.~Duquesne and A.~Boussouar},
  title = {{Analysis and visualization of the glass
             eel behavior (Anguilla anguilla) in the Adour estuary
             and estimate of its upstream migration speed}},
  note = {\url{http://dx.doi.org/10.1051/alr/2009041}},
  journal = {Aquatic Living Resources},
  year = 2009,
  volume = 22,
  number = 4,
  pages = {525--534},
  month = dec
}
[2] H. Class et al. A benchmark study on problems related to CO2 storage in geologic formations. Computational Geosciences, 13(4):409-434, December 2009. http://dx.doi.org/10.1007/s10596-009-9146-x.
@article{Class_2009,
  author = {H.~Class and others},
  title = {{A benchmark study on problems related to CO2 storage in geologic formations}},
  journal = {Computational Geosciences},
  year = 2009,
  volume = 13,
  number = 4,
  pages = {409--434},
  month = dec,
  note = {\url{http://dx.doi.org/10.1007/s10596-009-9146-x}}
}
[3] C. Barbarosie and A.-M. Toader. Optimization of bodies with locally periodic microstructure. Technical Report Pre-2009-021, Centro de Matemática e Aplicações Fundamentais (CMAF), December 2009. http://cmaf.ptmat.fc.ul.pt/arquivo/docs/pre-2009-021.pdf.
@techreport{Barbarosie_2009,
  author = {C.~Barbarosie and A.-M.~Toader},
  title = {{Optimization of bodies with locally periodic
                  microstructure}},
  institution = {Centro de Matem\'{a}tica e Aplica\c{c}\~{o}es Fundamentais (CMAF)},
  number = {Pre-2009-021},
  day = {2},
  month = dec,
  year = {2009},
  note = {\url{http://cmaf.ptmat.fc.ul.pt/arquivo/docs/pre-2009-021.pdf}}
}
[4] B. S. Kirk and G. F. Carey. A parallel, adaptive finite element scheme for modeling chemotactic biological systems. Communications in Numerical Methods in Engineering, 25(12):1162-1185, December 2009. http://dx.doi.org/10.1002/cnm.1173.
@article{Kirk_2009c,
  author = {B.~S.~Kirk and G.~F.~Carey},
  title = {{A parallel, adaptive finite element scheme for
              modeling chemotactic biological systems}},
  journal = {Communications in Numerical Methods in Engineering},
  volume = {25},
  number = {12},
  pages = {1162--1185},
  month = dec,
  year = {2009},
  note = {\url{http://dx.doi.org/10.1002/cnm.1173}}
}
[5] D. J. Knezevic and E. Süli. A heterogeneous alternating-direction method for a micro-macro dilute polymeric fluid model. European Series in Applied and Industrial Mathematics: Mathematical Modelling and Numerical Analysis, 43(6):1117-1156, November 2009. http://dx.doi.org/10.1051/m2an/2009034.
@article{Knezevic_2009d,
  author = {D.~J.~Knezevic and E.~S\"{u}li},
  title = {{A heterogeneous alternating-direction method
            for a micro-macro dilute polymeric fluid model}},
  note = {\url{http://dx.doi.org/10.1051/m2an/2009034}},
  journal = {European Series in Applied and Industrial Mathematics:
             Mathematical Modelling and Numerical Analysis},
  year = 2009,
  volume = 43,
  number = 6,
  pages = {1117--1156},
  month = nov
}
[6] L. Antiga, R. N. Planken, K. Van Canneyt, L. Botti, A. Caroli, B. Ene-Iordache, J. Tordoir, P. Verdonck, and A. Remuzzi. Non-linear resistance associated to complex geometry at high flow rates in vascular access for hemodialysis. In Olaf Dössel and Wolfgang C. Schlegel, editors, World Congress on Medical Physics and Biomedical Engineering, pages 543-546, Munich, Germany, September 7-12, 2009. Springer Berlin Heidelberg. http://dx.doi.org/10.1007/978-3-642-03885-3.
@inproceedings{Antiga_2009,
  author = {L. Antiga and R. N. Planken and K. Van Canneyt and
                L. Botti and A. Caroli and B. Ene-Iordache and
                J. Tordoir and P. Verdonck and A. Remuzzi},
  title = {{Non-linear resistance associated to complex geometry
                 at high flow rates in vascular access for hemodialysis}},
  booktitle = {{World Congress on Medical Physics and Biomedical Engineering}},
  editor = {Olaf D\"{o}ssel and Wolfgang C. Schlegel},
  pages = {543--546},
  publisher = {Springer Berlin Heidelberg},
  month = sep # {~7--12,},
  address = {Munich, Germany},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1007/978-3-642-03885-3}}
}
[7] M. F. Barone, I. Kalashnikova, M. R. Brake, and D. J. Segalman. Reduced order modeling of fluid/structure interaction. Technical Report SAND2009-7189, Sandia National Laboratories, September 2009. http://www.stanford.edu/~irinak/rom_ldrd_sand.pdf.
@techreport{Barone_2009b,
  author = {M.~F.~Barone and I.~Kalashnikova and M.~R.~Brake and D.~J.~Segalman},
  title = {{Reduced order modeling of fluid/structure interaction}},
  institution = {Sandia National Laboratories},
  month = sep,
  year = {2009},
  number = {SAND2009-7189},
  note = {\url{http://www.stanford.edu/~irinak/rom_ldrd_sand.pdf}}
}
[8] Y. Lu and A. F. Chatziioannou. A parallel adaptive finite element method for the simulation of photon migration with the radiative-transfer-based model. Communications in Numerical Methods in Engineering, 25(6):751-770, June 2009. http://dx.doi.org/10.1002/cnm.1167.
@article{Lu_2009b,
  author = {Y.~Lu and A.~F.~Chatziioannou},
  title = {{A parallel adaptive finite element method for the
              simulation of photon migration with the radiative-transfer-based model}},
  journal = {Communications in Numerical Methods in Engineering},
  month = jun,
  year = 2009,
  volume = 25,
  number = 6,
  pages = {751--770},
  note = {\url{http://dx.doi.org/10.1002/cnm.1167}}
}
[9] M. Auf der Maur, M. Povolotskyi, F. Sacconi, G. Romano, G. Penazzi, A. Pecchia, and A. Di Carlo. Multiscale-multiphysics simulation of nanostructured devices: the TiberCAD project. In 13th International Workshop on Computational Electronics (IWCE '09). Institute of Electrical and Electronic Engineers (IEEE), May 27-29, 2009. http://ieeexplore.ieee.org/iel5/5091069/5091070/05091126.pdf.
@inproceedings{AufderMaur_2009,
  author = {M.~{Auf der Maur} and M.~Povolotskyi and F.~Sacconi and
                G.~Romano and G.~Penazzi and A.~Pecchia and A.~{Di Carlo}},
  title = {{Multiscale-multiphysics simulation of nanostructured devices:
                 the TiberCAD project}},
  booktitle = {{13th International Workshop on Computational Electronics (IWCE '09)}},
  publisher = {Institute of Electrical and Electronic Engineers (IEEE)},
  month = may # {~27--29,},
  year = {2009},
  note = {\url{http://ieeexplore.ieee.org/iel5/5091069/5091070/05091126.pdf}}
}
[10] D. Gaston, G. Hansen, and C. Newman. MOOSE: A parallel computational framework for coupled systems of nonlinear equations. In International Conference on Mathematics, Computational Methods & Reactor Physics (M&C 2009), Saratoga Springs, New York, May 7-9, 2009. http://www.inl.gov/technicalpublications/Documents/4336141.pdf.
@conference{Gaston_2009c,
  author = {D.~Gaston and G.~Hansen and C.~Newman},
  title = {{MOOSE: A parallel computational framework for coupled systems of nonlinear equations}},
  booktitle = {International Conference on Mathematics, Computational
               Methods \& Reactor Physics (M\&C 2009)},
  address = {Saratoga Springs, New York},
  month = may # {~7--9,},
  year = {2009},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/4336141.pdf}}
}
[11] H. Park, D. Gaston, S. Kadioglu, D. Knoll, R. Martineau, W. Taitano, and D. Lebrun-Grandié. Tightly coupled multiphysics simulations for pebble bed reactors. In International Conference on Mathematics, Computational Methods & Reactor Physics (M&C 2009), Saratoga Springs, New York, May 7-9, 2009. http://mathematicsandcomputation.freezoka.net/MC09/pdfs/201237.pdf.
@conference{Park_2009,
  author = {H.~Park and D.~Gaston and S.~Kadioglu and D.~Knoll and R.~Martineau and W.~Taitano and D.~Lebrun-Grandi\'{e}},
  title = {Tightly coupled multiphysics simulations for pebble bed reactors},
  booktitle = {International Conference on Mathematics, Computational
               Methods \& Reactor Physics (M\&C 2009)},
  address = {Saratoga Springs, New York},
  month = may # {~7--9,},
  year = {2009},
  note = {\url{http://mathematicsandcomputation.freezoka.net/MC09/pdfs/201237.pdf}}
}
[12] V. S. Mahadevan, J. C. Ragusa, and V. Mousseau. Verification of multiphysics software: Space and time convergence studies for nonlinearly coupled applications. In International Conference on Mathematics, Computational Methods & Reactor Physics (M&C 2009), Saratoga Springs, New York, May 7-9, 2009. http://www.inl.gov/technicalpublications/Documents/4247162.pdf.
@conference{Mahadevan_2009,
  author = {V.~S.~Mahadevan and J.~C.~Ragusa and V.~Mousseau},
  title = {Verification of Multiphysics software: Space and time
               convergence studies for nonlinearly coupled applications},
  booktitle = {International Conference on Mathematics, Computational
               Methods \& Reactor Physics (M\&C 2009)},
  address = {Saratoga Springs, New York},
  month = may # {~7--9,},
  year = {2009},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/4247162.pdf}}
}
[13] M. F. Barone, I. Kalashnikova, D. J. Segalman, and H. K. Thornquist. Stable Galerkin reduced order models for linearized compressible flow. Journal of Computational Physics, 228(6):1932-1946, April 2009. http://dx.doi.org/10.1016/j.jcp.2008.11.015.
@article{Barone_2009,
  author = {M.~F.~Barone and I.~Kalashnikova and D.~J.~Segalman and H.~K.~Thornquist},
  title = {{Stable Galerkin reduced order models for linearized compressible flow}},
  journal = {Journal of Computational Physics},
  volume = {228},
  number = {6},
  pages = {1932--1946},
  year = {2009},
  month = apr,
  issn = {0021-9991},
  note = {\url{http://dx.doi.org/10.1016/j.jcp.2008.11.015}}
}
[14] M. Polidori. Set Up and Preliminary Assessment of a 3D Numerical Model for the Thermo-Fluid Dynamics Analysis of an Open Square Lattice Core of a Lead Cooled Reactor. Technical Report RSE/2009/84, Ente per le Nuove tecnologie, l'Energia e l'Ambiente (ENEA), March 2009. http://www.enea.it/enea_paese/sistema_elettrico/Nucleare_fissione/Reattori_Innovativi/RSE84.pdf.
@techreport{Polidori_2009,
  author = {M.~Polidori},
  title = {{Set Up and Preliminary Assessment of a 3D Numerical Model
                  for the Thermo-Fluid Dynamics Analysis of an Open Square
                  Lattice Core of a Lead Cooled Reactor}},
  institution = {Ente per le Nuove tecnologie, l'Energia e l'Ambiente (ENEA)},
  number = {RSE/2009/84},
  year = {2009},
  month = mar,
  note = {\url{http://www.enea.it/enea_paese/sistema_elettrico/
  Nucleare_fissione/Reattori_Innovativi/RSE84.pdf}}
}
[15] S. Lu et al. Multiscale Modeling in Rodent Ventricular Myocytes. IEEE Engineering in Medicine and Biology Magazine, 28(2):46-57, March 2009. http://www.ncbi.nlm.nih.gov/pubmed/19349251.
@article{S_Lu_2009,
  author = {S.~Lu and others},
  title = {{Multiscale Modeling in Rodent Ventricular Myocytes}},
  journal = {IEEE Engineering in Medicine and Biology Magazine},
  year = 2009,
  month = mar,
  volume = 28,
  number = 2,
  pages = {46--57},
  note = {\url{http://www.ncbi.nlm.nih.gov/pubmed/19349251}}
}
[16] N. M. Abukhdeir and A. D. Rey. Shape-dynamic growth, structure, and elasticity of homogeneously oriented spherulites in an isotropic/smectic-A mesophase transition. Liquid Crystals, 36(10-11):1125-1137, 2009. http://dx.doi.org/10.1080/02678290902878754.
@article{Abukhdeir_2009,
  author = {N.~M.~Abukhdeir and A.~D.~Rey},
  title = {{Shape-dynamic growth, structure, and elasticity of homogeneously
              oriented spherulites in an isotropic/smectic-A mesophase transition}},
  journal = {Liquid Crystals},
  year = 2009,
  volume = 36,
  number = {10--11},
  pages = {1125--1137},
  note = {\url{http://dx.doi.org/10.1080/02678290902878754}}
}
[17] M. Blome, H. R. Maurer, and K. Schmidt. Advances on 3D geoelectric forward solver techniques. Geophysical Journal International, 176(3):740-752, 2009. http:dx.doi.org/10.1111/j.1365-246X.2008.04006.x.
@article{Blome_2009,
  author = {M.~Blome and H.~R.~Maurer and K.~Schmidt},
  title = {{Advances on 3D geoelectric forward solver techniques}},
  journal = {Geophysical Journal International},
  year = 2009,
  volume = 176,
  number = 3,
  pages = {740--752},
  note = {\url{http:dx.doi.org/10.1111/j.1365-246X.2008.04006.x}}
}
[18] M. Auf der Maur, M. Povolotskyi, F. Sacconi, A. Pecchia, G. Romano, G. Penazzi, and A. Di Carlo. TiberCAD: towards multiscale simulation of optoelectronic devices. Optical and Quantum Electronics, 40(14):1077-1083, 2009. http://dx.doi.org/10.1007/s11082-009-9272-7.
@article{AufderMaur_2009b,
  author = {M.~{Auf der Maur} and M.~Povolotskyi and F.~Sacconi and
               A.~Pecchia and G.~Romano and G.~Penazzi and A.~{Di Carlo}},
  title = {{TiberCAD: towards multiscale simulation of optoelectronic devices}},
  pages = {1077--1083},
  year = 2009,
  journal = {Optical and Quantum Electronics},
  volume = {40},
  number = {14},
  note = {\url{http://dx.doi.org/10.1007/s11082-009-9272-7}}
}
[19] D. J. Knezevic and E. Süli. A Deterministic Multiscale Approach for Simulating Dilute Polymeric Fluids. In Lecture Notes in Computational Science and Engineering, BAIL 2008 - Boundary and Interior Layers, volume 69, pages 23-38. Springer, Berlin Heidelberg, 2009. http://dx.doi.org/10.1007/978-3-642-00605-0.
@incollection{Knezevic_2009,
  author = {D.~J.~Knezevic and E.~S\"{u}li},
  title = {{A Deterministic Multiscale Approach
                for Simulating Dilute Polymeric Fluids}},
  pages = {23--38},
  year = 2009,
  publisher = {Springer},
  address = {Berlin Heidelberg},
  booktitle = {Lecture Notes in Computational Science and Engineering,
               BAIL 2008 - Boundary and Interior Layers},
  volume = {69},
  note = {\url{http://dx.doi.org/10.1007/978-3-642-00605-0}}
}
[20] Y. Lu, H. B. Machado, A. Douraghy, D. Stout, H. Herschman, and A. F. Chatziioannou. Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework. Optics Express, 17(19):16681-16695, 2009. http://dx.doi.org/10.1364/OE.17.016681.
@article{Lu_2009,
  author = {Y.~Lu and H.~B.~Machado and A.~Douraghy
             and D.~Stout and H.~Herschman and
             A.~F.~Chatziioannou},
  title = {Experimental bioluminescence tomography with fully
             parallel radiative-transfer-based reconstruction framework},
  journal = {Optics Express},
  number = {19},
  pages = {16681--16695},
  volume = {17},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1364/OE.17.016681}}
}
[21] D. Xu, J. Stare, and A. L. Cooksy. Solving the vibrational Schrödinger equation on an arbitrary multidimensional potential energy surface by the finite element method. Computer Physics Communications, 180(11):2079-2094, 2009. http://dx.doi.org/10.1016/j.cpc.2009.06.010.
@article{Xu_2009,
  author = {D.~Xu and J.~Stare and A.~L.~Cooksy},
  title = {Solving the vibrational {S}chr\"{o}dinger equation
             on an arbitrary multidimensional potential energy
	     surface by the finite element method},
  journal = {Computer Physics Communications},
  volume = {180},
  number = {11},
  pages = {2079--2094},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1016/j.cpc.2009.06.010}}
}
[22] D. Gaston, C. Newman, G. Hansen, and D. Lebrun-Grandié. MOOSE: A parallel computational framework for coupled systems of nonlinear equations. Nuclear Engineering and Design, 239(10):1768-1778, 2009. http://dx.doi.org/10.1016/j.nucengdes.2009.05.021.
@article{Gaston_2009b,
  author = {D.~Gaston and C.~Newman and G.~Hansen and D.~Lebrun-Grandi\'{e}},
  title = {{MOOSE}: A parallel computational framework for coupled
             systems of nonlinear equations},
  journal = {Nuclear Engineering and Design},
  volume = {239},
  number = {10},
  pages = {1768--1778},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2009.05.021}}
}
[23] I. A. Jones, W. Ruijter, and A. C. Long. A novel tetrahedral element for static and dynamic analysis of laminated composites. Journal of Physics: Conference Series, 181:012042 (8pp), 2009. http://dx.doi.org/10.1088/1742-6596/181/1/012042.
@article{Jones_2009,
  author = {I.~A.~Jones and W.~Ruijter and A.~C.~Long},
  title = {A novel tetrahedral element for static and dynamic analysis of laminated composites},
  journal = {Journal of Physics: Conference Series},
  volume = {181},
  pages = {012042 (8pp)},
  note = {\url{http://dx.doi.org/10.1088/1742-6596/181/1/012042}},
  year = {2009}
}
[24] D. Gaston, G. Hansen, S. Kadioglu, D. A. Knoll, C. Newman, H. Park, C. Permann, and W. Taitano. Parallel multiphysics algorithms and software for computational nuclear engineering. Journal of Physics: Conference Series, 180:012012 (10pp), 2009. http://dx.doi.org/10.1088/1742-6596/180/1/012012.
@article{Gaston_2009,
  author = {D.~Gaston and G.~Hansen and S.~Kadioglu and D.~A.~Knoll
            and C.~Newman and H.~Park and C.~Permann and W.~Taitano},
  title = {Parallel multiphysics algorithms and software for computational nuclear engineering},
  journal = {Journal of Physics: Conference Series},
  volume = {180},
  pages = {012012 (10pp)},
  year = {2009},
  note = {\url{http://dx.doi.org/10.1088/1742-6596/180/1/012012}}
}
[25] M. P. Lüthi. Transient response of idealized glaciers to climate variations. Journal of Glaciology, 55(193):918-930, 2009. http://dx.doi.org/10.3189/002214309790152519.
@article{Luethi2009,
  author = {M.~P.~L{\"u}thi},
  title = {Transient response of idealized glaciers to climate variations},
  journal = {Journal of Glaciology},
  year = 2009,
  number = 193,
  volume = 55,
  pages = {918--930},
  note = {\url{http://dx.doi.org/10.3189/002214309790152519}}
}
[26] A. M. P. Valli, R. N. Elias, G. F. Carey, and A. L. G. A. Coutinho. PID adaptive control of incremental and arclength continuation in nonlinear applications. International Journal for Numerical Methods in Fluids, 61(11):1181-1200, 2009. http://dx.doi.org/10.1002/fld.1998.
@article{Valli_2009,
  author = {A. M. P. Valli and R. N. Elias and G. F. Carey and A. L. G. A. Coutinho},
  title = {{PID adaptive control of incremental and arclength continuation in nonlinear applications}},
  journal = {International Journal for Numerical Methods in Fluids},
  year = 2009,
  volume = {61},
  number = {11},
  pages = {1181--1200},
  note = {\url{http://dx.doi.org/10.1002/fld.1998}}
}
[27] J. Biermann, O. von Estorff, S. Petersen, and C. Wenterodt. Higher order finite and infinite elements for the solution of Helmholtz problems. Computer Methods in Applied Mechanics and Engineering, 198(13-14):1171-1188, 2009. http://dx.doi.org/10.1016/j.cma.2008.11.009.
@article{Biermann_2009,
  author = {J.~Biermann and O.~von Estorff and S.~Petersen and C.~Wenterodt},
  title = {{Higher order finite and infinite elements for the solution of Helmholtz problems}},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  volume = {198},
  number = {13--14},
  pages = {1171--1188},
  year = {2009},
  issn = {0045-7825},
  note = {\url{http://dx.doi.org/10.1016/j.cma.2008.11.009}}
}
[28] B. S. Kirk. Multidimensional Assessment of Modeling Error in Typical High-Speed Wind-Tunnel Heat-Transfer Data-Reduction Schemes. AIAA Journal of Thermophysics and Heat Transfer, 23(1):186-191, January 2009. http://dx.doi.org/10.2514/1.35989.
@article{Kirk_2009,
  author = {B.~S.~Kirk},
  title = {{Multidimensional Assessment of Modeling Error in Typical
              High-Speed Wind-Tunnel Heat-Transfer Data-Reduction Schemes}},
  journal = {AIAA Journal of Thermophysics and Heat Transfer},
  year = 2009,
  month = jan,
  volume = 23,
  number = 1,
  pages = {186--191},
  note = {\url{http://dx.doi.org/10.2514/1.35989}}
}

2008

[1] A. Cervone and S. Manservisi. A three-dimensional CFD program for the simulation of the thermo-hydraulic behaviour of an open core liquid metal reactor. Technical Report RSE/2009/85, ENEA: Ente per le Nuove tecnologie, l'Energia e l'Ambiente, December 2008. http://www.enea.it/attivita_ricerca/energia/sistema_elettrico/Nucleare_fissione/Reattori_Innovativi/RSE85.pdf.
@techreport{Cervone_2008,
  author = {A.~Cervone and S.~Manservisi},
  title = {{A three-dimensional CFD program for the simulation of
                  the thermo-hydraulic behaviour of an open core liquid metal reactor}},
  institution = {ENEA: Ente per le Nuove tecnologie, l'Energia e l'Ambiente},
  day = 16,
  month = dec,
  year = 2008,
  number = {RSE/2009/85},
  note = {\url{http://www.enea.it/attivita_ricerca/energia/
  sistema_elettrico/Nucleare_fissione/Reattori_Innovativi/RSE85.pdf}}
}
[2] A. Hawkins and J. T. Oden. Toward a predictive model of tumor growth. Technical report, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, November 2008. http://www.ices.utexas.edu/research/reports/2008/0829.pdf.
@techreport{Hawkins_2008,
  author = {A.~Hawkins and J.~T.~Oden},
  title = {{Toward a predictive model of tumor growth}},
  institution = {Institute for Computational Engineering and Sciences (ICES),
                 The University of Texas at Austin},
  day = {20},
  month = nov,
  year = {2008},
  note = {\url{http://www.ices.utexas.edu/research/reports/2008/0829.pdf}}
}
[3] L. Antiga, M. Piccinelli, L. Botti, B. Ene-Iordache, A. Remuzzi, and D. A. Steinman. An image-based modeling framework for patient-specific computational hemodynamics. Medical and Biological Engineering and Computing, 46(11):1097-1112, November 2008. http://dx.doi.org/10.1007/s11517-008-0420-1.
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  title = {{An image-based modeling framework for patient-specific computational hemodynamics}},
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[4] D. Xu, J. Stare, and A. L. Cooksy. Solving the vibrational Schrödinger equation on an arbitrary multidimensional potential energy surface by the finite element method. Technical Report CSRCR2008-26, Computational Science Research Center, San Diego State University, October 2008.
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  title = {{Solving the vibrational {S}chr\"{o}dinger equation
                  on an arbitrary multidimensional potential
		  energy surface by the finite element method}},
  institution = {Computational Science Research Center,
                 San Diego State University},
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[5] V. S. Mahadevan and J. C. Ragusa. High-order spatio-temporal schemes for coupled, multi-physics reactor simulations. Technical report, Idaho National Laboratory, September 2008. http://www.inl.gov/technicalpublications/Documents/4120524.pdf.
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  author = {V.~S.~Mahadevan and J.~C.~Ragusa},
  title = {High-order spatio-temporal schemes for coupled, multi-physics reactor simulations},
  institution = {Idaho National Laboratory},
  month = sep,
  year = {2008},
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}
[6] F. Galbusera, M. Cioffi, and M. T. Raimondi. An in silico bioreactor for simulating laboratory experiments in tissue engineering. Biomedical Microdevices, 10(4):547-554, August 2008. http://dx.doi.org/10.1007/s10544-008-9164-9.
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  author = {F.~Galbusera and M.~Cioffi and M.~T.~Raimondi},
  title = {{An in silico bioreactor for simulating laboratory experiments in tissue engineering}},
  journal = {Biomedical Microdevices},
  year = 2008,
  volume = 10,
  number = 4,
  month = aug,
  pages = {547--554},
  note = {\url{http://dx.doi.org/10.1007/s10544-008-9164-9}}
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[7] M. Piccinelli, L. Botti, B. Ene-Iordache, A. Remuzzi, A. Veneziani, and L. Antiga. Link between vortex structures and voronoi diagram in cerebral aneurysms. Journal of Biomechanics, 41, Supplement 1:S12, July 2008.
@article{Piccinelli_2008,
  author = {M.~Piccinelli and L.~Botti and B.~Ene-Iordache
             and A.~Remuzzi and A.~Veneziani and L.~Antiga},
  title = {{Link between vortex structures and voronoi diagram in cerebral aneurysms}},
  journal = {Journal of Biomechanics},
  year = 2008,
  month = jul,
  volume = {41, Supplement 1},
  pages = {S12}
}
[8] K. Van Canneyt, R. Kaminsky, L. Botti, L. Antiga, J. Tordoir, P. Verdonck, and S. Eloot. Can a kinked arterio-venous graft cause instable flow? a patient-specific validated computational study. Journal of Biomechanics, 41(Supplement 1):S210, July 2008. http://dx.doi.org/10.1016/S0021-9290(08)70210-0.
@article{VanCanneyt_2008,
  author = {K.~Van Canneyt and R.~Kaminsky and L.~Botti and
           L.~Antiga and J.~Tordoir and P.~Verdonck and S.~Eloot},
  title = {CAN A KINKED ARTERIO-VENOUS GRAFT CAUSE INSTABLE FLOW?
           A PATIENT-SPECIFIC VALIDATED COMPUTATIONAL STUDY},
  journal = {Journal of Biomechanics},
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  year = {2008},
  month = jul,
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[9] L. Botti, M. Piccinelli, B. Ene-Iordache, A. Remuzzi, and L. Antiga. An open source parallel AMR FE solver for biological flows based on the LibMesh C++ library. Journal of Biomechanics, 41(Supplement 1):S211, July 2008. http://dx.doi.org/10.1016/S0021-9290(08)70211-2.
@article{Botti_2008,
  author = {L.~Botti and M.~Piccinelli and B.~Ene-Iordache and A.~Remuzzi and L.~Antiga},
  title = {AN OPEN SOURCE PARALLEL {AMR} {FE} SOLVER FOR BIOLOGICAL FLOWS BASED ON THE {LibMesh C++} LIBRARY},
  journal = {Journal of Biomechanics},
  volume = {41},
  number = {Supplement 1},
  pages = {S211},
  year = {2008},
  month = jul,
  issn = {0021-9290},
  note = {\url{http://dx.doi.org/10.1016/S0021-9290(08)70211-2}}
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[10] H. T. Ahn, M. Shashkov, and M. A. Christon. The moment-of-fluid method in action. Communications in Numerical Methods in Engineering, 25(10):1009-1018, July 2008. http://dx.doi.org/10.1002/cnm.1135.
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  author = {{Ahn}, H.~T. and {Shashkov}, M. and M.~A.~Christon},
  title = {{The moment-of-fluid method in action}},
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[11] A. C. Powell, IV and R. Arroyave. Open source software for materials and process modeling. Journal of the Minerals, Metals and Materials Society, 60(5):32-39, May 2008. http://dx.doi.org/10.1007/s11837-008-0057-4.
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  author = {{Powell}, IV, A.~C. and {Arroyave}, R.},
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[12] T. Kröger and T. Preusser. Stability of the 8-tetrahedra shortest-interior-edge partitioning method. Numerische Mathematik, 109(3):435-457, May 2008. http://dx.doi.org/10.1007/s00211-008-0148-8.
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  author = {T.~Kr\"{o}ger and T.~Preusser},
  title = {{Stability of the 8-tetrahedra shortest-interior-edge partitioning method}},
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[13] M. Bhatia and E. Livnet. Design-oriented thermostructural analysis with external and internal radiation, Part 1: Steady state. AIAA Journal, 46(3):578-590, March 2008. http://dx.doi.org/10.2514/1.26236.
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  title = {{Design-oriented thermostructural analysis with external and internal radiation, Part 1: Steady state}},
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[14] V. M. Kolodkin, V. S. Knyazhin, M. V. Kolodkin, and V. M. Senopal'nikov. Design of the technology of the blacksmith mold (Russian). News of the Udmurtian State University, Physics and Chemistry Section, 1:120-128, February 2008. http://vestnik.udsu.ru/2008/2008-04/vuu_08_041_10.pdf.
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  author = {V.~M.~Kolodkin and V.~S.~Knyazhin and M.~V.~Kolodkin and V.~M.~Senopal'nikov},
  title = {{Design of the technology of the blacksmith mold (Russian)}},
  journal = {News of the Udmurtian State University, Physics and Chemistry Section},
  year = 2008,
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  pages = {120--128},
  note = {\url{http://vestnik.udsu.ru/2008/2008-04/vuu_08_041_10.pdf}}
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[15] M. F. Barone, D. J. Segalman, H. Thornquist, and I. Kalashnikova. Galerkin reduced order models for compressible flow with structural interaction. In 46th AIAA Aerospace Sciences Meeting and Exhibit, Reno, NV, 2008. http://www.stanford.edu/~irinak/reno08.pdf.
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  author = {M.~F.~Barone and D.~J.~Segalman and H.~Thornquist and I.~Kalashnikova},
  title = {Galerkin reduced order models for compressible flow with structural interaction},
  booktitle = {46th AIAA Aerospace Sciences Meeting and Exhibit},
  address = {Reno, NV},
  year = {2008},
  note = {\url{http://www.stanford.edu/~irinak/reno08.pdf}}
}
[16] O. von Estorff, S. Petersen, and D. Dreyer. Efficient Infinite Elements based on Jacobi Polynomials. In Steffen Marburg and Bodo Nolte, editors, Computational Acoustics of Noise Propagation in Fluids-Finite and Boundary Element Methods, pages 231-250. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/978-3-540-77448-8_9.
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  title = {{Efficient Infinite Elements based on Jacobi Polynomials}},
  pages = {231--250},
  year = 2008,
  publisher = {Springer Berlin Heidelberg},
  editor = {Steffen Marburg and Bodo Nolte},
  booktitle = {Computational Acoustics of Noise Propagation in
               Fluids--Finite and Boundary Element Methods},
  volume = {},
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[17] E. De Sturler, G. H. Paulino, and S. Wang. Topology optimization with adaptive mesh refinement. In J. F. Abel and J. R. Cooke, editors, Proceedings of the 6th International Conference on Computation of Shell and Spatial Structures (IASS-IACM 2008), Ithaca, NY, 2008. Cornell University. http://www.math.vt.edu/people/sturler/publications/Proc-IASS-IACM_TopOptAMR_SturlerPaulinoWang_2008.pdf.
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  author = {E.~{De Sturler} and G.~H.~Paulino and S.~Wang},
  title = {Topology Optimization with Adaptive Mesh Refinement},
  booktitle = {{Proceedings of the 6th International Conference on
                 Computation of Shell and Spatial Structures (IASS-IACM 2008)}},
  editor = {J.~F.~Abel and J.~R.~Cooke},
  publisher = {Cornell University},
  address = {Ithaca, NY},
  year = {2008},
  note = {\url{http://www.math.vt.edu/people/sturler/
  publications/Proc-IASS-IACM_TopOptAMR_SturlerPaulinoWang_2008.pdf}}
}
[18] R. H. Stogner, G. F. Carey, and B. T. Murray. Approximation of Cahn-Hilliard diffuse interface models using parallel adaptive mesh refinement and coarsening with C1 elements. International Journal for Numerical Methods in Engineering, 76(5):636-661, 2008. http://dx.doi.org/10.1002/nme.2337.
@article{Stogner_2008,
  author = {R.~H.~Stogner and G.~F.~Carey and B.~T.~Murray},
  title = {{Approximation of Cahn-Hilliard diffuse interface models
              using parallel adaptive mesh refinement and coarsening with
	      $C^1$ elements}},
  journal = {International Journal for Numerical Methods in Engineering},
  year = 2008,
  volume = 76,
  number = 5,
  pages = {636--661},
  note = {\url{http://dx.doi.org/10.1002/nme.2337}}
}
[19] S. Berrone and E. Süli. Two-sided a posteriori error bounds for incompressible quasi-Newtonian flows. IMA Journal of Numerical Analysis, 28(2):382-421, 2008. http://dx.doi.org/10.1093/imanum/drm017.
@article{Berrone_2008,
  author = {S.~Berrone and E.~S\"{u}li},
  title = {{Two-sided a posteriori error bounds for incompressible quasi-Newtonian flows}},
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  year = 2008,
  volume = 28,
  number = 2,
  pages = {382--421},
  note = {\url{http://dx.doi.org/10.1093/imanum/drm017}}
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[20] B. S. Kirk and G. F. Carey. Development and validation of a SUPG finite element scheme for the compressible Navier-Stokes equations using a modified inviscid flux discretization. International Journal for Numerical Methods in Fluids, 57(3):265-293, 2008. http://dx.doi.org/10.1002/fld.1635.
@article{Kirk_2008a,
  author = {B.~S.~Kirk and G.~F.~Carey},
  title = {{Development and validation of a SUPG finite element scheme for the compressible
              Navier-Stokes equations using a modified inviscid flux discretization}},
  journal = {International Journal for Numerical Methods in Fluids},
  year = 2008,
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  number = 3,
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  note = {\url{http://dx.doi.org/10.1002/fld.1635}}
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[21] M. Brinkmeier, U. Nackenhorst, S. Petersen, and O. von Estorff. A numerical model for the simulation of tire rolling noise. Journal of Sound and Vibration, 309(1-2):20-39, January 2008. http://dx.doi.org/10.1016/j.jsv.2006.11.040.
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  author = {Brinkmeier, M. and Nackenhorst, U. and Petersen, S. and {von Estorff}, O.},
  title = {A Numerical Model for the Simulation of Tire Rolling Noise},
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[22] Y. Lu and A. F. Chatziioannou. Parallel adaptive finite element simulation for optical molecular imaging with simplified spherical harmonics approximation. In P. Sellin, editor, Nuclear Science Symposium Conference Record (NSS08), pages 4039-4042. IEEE, 2008. http://dx.doi.org/10.1109/NSSMIC.2008.4774171.
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  author = {Y.~Lu and A.~F.~Chatziioannou},
  title = {{Parallel adaptive finite element simulation for optical
                 molecular imaging with simplified spherical harmonics approximation}},
  booktitle = {{Nuclear Science Symposium Conference Record (NSS08)}},
  editor = {P.~Sellin},
  pages = {4039--4042},
  publisher = {IEEE},
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}

2007

[1] M. Anderson and J.-H. Kimn. A numerical approach to space-time finite elements for the wave equation. Journal of Computational Physics, 226:466-476, September 2007. http://dx.doi.org/10.1016/j.jcp.2007.04.021.
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  title = {{A numerical approach to space-time finite elements for the wave equation}},
  journal = {Journal of Computational Physics},
  eprint = {arXiv:gr-qc/0601099},
  year = 2007,
  month = sep,
  volume = 226,
  pages = {466--476},
  note = {\url{http://dx.doi.org/10.1016/j.jcp.2007.04.021}}
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[2] M. R. F. Kidner, K. Idrisi, J. P. Carneal, and M. E. Johnson. Comparison of experiment, finite element, and wave based models for mass inclusions in poro-elastic layers. In Proceedings of the 14th International Congress on Sound & Vibration (ICSV14), Cairns, Australia, July 9-12, 2007. http://data.mecheng.adelaide.edu.au/avc/publications/public_papers/2007/kidner_icsv14_2007_p577.pdf.
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  author = {M.~R.~F.~Kidner and K.~Idrisi and J.~P.~Carneal and M.~E.~Johnson},
  title = {{Comparison of experiment, finite element, and wave based models for mass inclusions in poro-elastic layers}},
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  address = {Cairns, Australia},
  year = 2007,
  month = jul # {~9--12,},
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[3] J. Steensland and J. W. Peterson. A Study of Dynamically Adaptive Partitioning for AMR. In Proceedings of the 2007 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'07) Volume 2, pages 503-509, Las Vegas, NV, June 25-28, 2007. CSREA Press. ISBN: 1-60132-021-3.
@inproceedings{Steensland_2007,
  author = {J.~Steensland and J.~W.~Peterson},
  title = {{A Study of Dynamically Adaptive Partitioning for AMR}},
  booktitle = {{Proceedings of the 2007 International Conference on Parallel and
                Distributed Processing Techniques and Applications (PDPTA'07)
		Volume 2}},
  month = jun # {~25--28,},
  pages = {503--509},
  address = {Las Vegas, NV},
  publisher = {CSREA Press},
  year = {2007},
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[4] M. Auf der Maur, M. Povolotskyi, F. Sacconi, and A. di Carlo. TIBERCAD: A new multiscale simulator for electronic and optoelectronic devices. Superlattices and Microstructures, 41:381-385, May 2007. http://dx.doi.org/10.1016/j.spmi.2007.03.011.
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  title = {{TIBERCAD: A new multiscale simulator for electronic and optoelectronic devices}},
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  year = 2007,
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[5] R. H. Stogner and G. F. Carey. C1 macroelements in adaptive finite element methods. Int. J. Numerical Methods in Engineering, 70(9):1076-1095, May 2007. http://dx.doi.org/10.1002/nme.1912.
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[6] K. Nam and M. M. Aral. Optimal placement of monitoring sensors in lakes. In Proceedings of the 2007 Georgia Water Resources Conference, University of Georgia, March 27-29, 2007. http://www.uga.edu/water/publication/uploads/2007/3.6.4.pdf.
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  author = {K.~Nam and M.~M.~Aral},
  title = {{Optimal placement of monitoring sensors in lakes}},
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  address = {University of Georgia},
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  year = {2007},
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[7] J. Biermann, O. von Estorff, S. Petersen, and H. Schmidt. Computational model to investigate the sound radiation from rolling tires. Tire Science and Technology, 35(3):209-225, 2007. http://dx.doi.org/10.2346/1.2768608.
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  year = {2007},
  journal = {Tire Science and Technology},
  volume = {35},
  number = {3},
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  note = {\url{http://dx.doi.org/10.2346/1.2768608}}
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[8] J. W. Peterson, G. F. Carey, D. J. Knezevic, and B. T. Murray. Adaptive finite element methodology for tumor angiogenesis modeling. Int. J. Numer. Meth. Eng., 69(6):1212-1238, 2007. http://dx.doi.org/10.1002/nme.1802.
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  author = {J.~W.~Peterson and G.~F.~Carey and D.~J.~Knezevic and B.~T.~Murray},
  title = {{Adaptive finite element methodology for tumor angiogenesis modeling}},
  journal = {Int.~J.~Numer.~Meth.~Eng.},
  volume = {69},
  number = {6},
  pages = {1212--1238},
  year = {2007},
  note = {\url{http://dx.doi.org/10.1002/nme.1802}}
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2006

[1] S. Berrone. Robust a posteriori error estimates for finite element discretizations of the heat equation with discontinuous coefficients. Mathematical Modelling and Numerical Analysis (M2AN), 40(6):991-1021, November 2006. http://dx.doi.org/10.1051/m2an:2006034.
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[2] J. J. Crookston, W. Ruijter, A. C. Long, and I. A. Jones. Modelling mechanical performance including damage development for textile composites using a grid-based finite element method with adaptive mesh refinement. In Proceedings of the 8th International Conference on Textile Composites (TEXCOMP-8), Nottingham, UK, October 16-18, 2006. http://textiles.nottingham.ac.uk/T09-Crookston.pdf.
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[3] D. J. Knezevic. Finite element methods for deterministic simulation of polymeric fluids. Technical Report NA-06/19, Oxford University Computing Laboratory, October 2006. http://www.maths.warwick.ac.uk/multiscale/MSPreprints/ox-NA-19-06.pdf.
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  month = oct,
  year = {2006},
  number = {NA-06/19},
  note = {\url{http://www.maths.warwick.ac.uk/multiscale/MSPreprints/ox-NA-19-06.pdf}}
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[4] M. Schindler, P. Talkner, and P. Hänggi. Computing stationary free-surface shapes in microfluidics. Physics of Fluids, 18(10):103303, October 2006. http://dx.doi.org/10.1063/1.2361291.
@article{Schindler_2006,
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  title = {{Computing stationary free-surface shapes in microfluidics}},
  journal = {Physics of Fluids},
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  year = 2006,
  month = oct,
  volume = 18,
  number = 10,
  pages = {103303},
  note = {\url{http://dx.doi.org/10.1063/1.2361291}}
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[5] L. Catabriga, J. J. Camata, A. M. P. Valli, A. L. G. A. Coutinho, and G. F. Carey. Reordering effects on preconditioned Krylov methods in AMR solutions of flow and transport, Paper CIL04-557. In Proceedings of the XXVII Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE). Brazilian Assoc. for Comp. Mechanics & Latin American Assoc. of Comp. Methods in Engineering, September 3-6, 2006. http://www.inf.ufes.br/~luciac/papers/CIL04_557.pdf.
@inproceedings{Catabriga_2006,
  author = {L.~Catabriga and J.~J.~Camata and A.~M.~P.~Valli and A.~L.~G.~A.~Coutinho and G.~F.~Carey},
  title = {{Reordering effects on preconditioned Krylov methods in AMR solutions of flow and transport, Paper CIL04-557}},
  booktitle = {{Proceedings of the XXVII Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE)}},
  publisher = {Brazilian Assoc. for Comp. Mechanics \& Latin American Assoc. of Comp. Methods in Engineering},
  year = {2006},
  month = sep # {~3--6,},
  note = {\url{http://www.inf.ufes.br/~luciac/papers/CIL04_557.pdf}}
}
[6] P. Simedrea, L. Antiga, and D. A. Steinman. Towards a new framework for simulating magnetic resonance imaging. In First Canadian Student Conference on Biomedical Computing (CSCBC 2006). Queen's University, Kingston Ontario, March 17-19, 2006. http://cscbc2006.cs.queensu.ca/assets/documents/Papers/paper108.pdf.
@inproceedings{Simedrea_2006b,
  author = {P.~Simedrea and L.~Antiga and D.~A.~Steinman},
  title = {{Towards a new framework for simulating magnetic resonance imaging}},
  booktitle = {{First Canadian Student Conference on Biomedical Computing (CSCBC 2006)}},
  publisher = {Queen's University, Kingston Ontario},
  month = mar # {~17--19,},
  year = {2006},
  note = {\url{http://cscbc2006.cs.queensu.ca/assets/documents/Papers/paper108.pdf}}
}
[7] P. Simedrea, L. Antiga, and D. A. Steinman. FE-MRI: Simulation of MRI using arbitrary finite elements. Proceedings of the International Society for Magnetic Resonance in Medicine, 14:2946, 2006. http://afni.nimh.nih.gov/sscc/staff/rwcox/ISMRM_2006/ISMRM%202006%20-%203340/files/02946.pdf.
@article{Simedrea_2006,
  author = {P.~Simedrea and L.~Antiga and D.~A.~Steinman},
  title = {{FE-MRI: Simulation of MRI using arbitrary finite elements}},
  journal = {Proceedings of the International Society for Magnetic Resonance in Medicine},
  year = 2006,
  volume = 14,
  pages = {2946},
  note = {\url{http://afni.nimh.nih.gov/sscc/staff/rwcox/ISMRM_2006/ISMRM%202006%20-%203340/files/02946.pdf}}
}
[8] O. von Estorff and S. Petersen. Vibro-acoustic investigations using finite and infinite elements. Proceedings of the Gesellschaft für Angewandte Mathematik und Mechanik (GAMM) Annual Meeting 2006 (PAMM), 6(1):615-616, 2006. http://dx.doi.org/10.1002/pamm.200610288.
@article{Estorff_2006,
  author = {O.~von~Estorff and S.~Petersen},
  title = {{Vibro-acoustic investigations using finite and infinite elements}},
  journal = {{Proceedings of the Gesellschaft f\"{u}r Angewandte Mathematik und Mechanik
              (GAMM) Annual Meeting 2006 (PAMM)}},
  year = 2006,
  volume = 6,
  number = 1,
  pages = {615--616},
  note = {\url{http://dx.doi.org/10.1002/pamm.200610288}}
}
[9] J. J. Marichalar, W. C. Rochelle, B. S. Kirk, and C. H. Campbell. Boundary Layer/Streamline Surface Catalytic Heating Predictions on Space Shuttle Orbiter. Journal of Spacecraft and Rockets, 43(6):1202-1215, 2006. http://dx.doi.org/10.2514/1.23082.
@article{Marichalar_2006,
  author = {J.~J.~Marichalar and W.~C.~Rochelle and B.~S.~Kirk and C.~H.~Campbell},
  title = {{Boundary Layer/Streamline Surface Catalytic Heating Predictions on Space Shuttle Orbiter}},
  journal = {Journal of Spacecraft and Rockets},
  year = 2006,
  volume = 43,
  number = 6,
  pages = {1202--1215},
  note = {\url{http://dx.doi.org/10.2514/1.23082}}
}
[10] S. Petersen, D. Dreyer, and O. von Estorff. Assessment of finite and spectral element shape functions for efficient iterative simulations of interior acoustics. Computer Methods in Applied Mechanics and Engineering, 195(44-47):6463-6478, 2006. http://dx.doi.org/10.1016/j.cma.2006.01.008.
@article{Petersen_2006,
  author = {Petersen, S. and Dreyer, D. and {von Estorff}, O.},
  title = {Assessment of finite and spectral element shape functions
              for efficient iterative simulations of interior acoustics},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  year = {2006},
  volume = {195},
  number = {44--47},
  pages = {6463--6478},
  note = {\url{http://dx.doi.org/10.1016/j.cma.2006.01.008}}
}
[11] D. Dreyer, S. Petersen, and O. von Estorff. Effectiveness and robustness of improved infinite elements for exterior acoustics. Computer Methods in Applied Mechanics and Engineering, 195(29-32):3591-3607, 2006. http://dx.doi.org/10.1016/j.cma.2005.01.019.
@article{Dreyer_2006,
  author = {D. Dreyer and S. Petersen and O. von Estorff},
  title = {Effectiveness and robustness of improved infinite elements for exterior acoustics},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  volume = {195},
  number = {29--32},
  pages = {3591--3607},
  year = {2006},
  issn = {0045-7825},
  note = {\url{http://dx.doi.org/10.1016/j.cma.2005.01.019}}
}

2005

[1] J. J. Camata, L. Catabriga, A. M. P. Valli, A. L. G. A. Coutinho, and G. F. Carey. Numerical Evaluation of the LCD method implemented in the LibMesh library, Paper CIL16-692. In Proceedings of the XXVI Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE). Brazilian Assoc. for Comp. Mechanics & Latin American Assoc. of Comp. Methods in Engineering, October 19-21, 2005. http://www.inf.ufes.br/~luciac/papers/CIL-0692.pdf.
@inproceedings{Camata_2005,
  author = {J.~J.~Camata and L.~Catabriga and A.~M.~P.~Valli and A.~L.~G.~A.~Coutinho and G.~F.~Carey},
  title = {{Numerical Evaluation of the LCD method implemented in the LibMesh library, Paper CIL16-692}},
  booktitle = {{Proceedings of the XXVI Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE)}},
  publisher = {Brazilian Assoc. for Comp. Mechanics \& Latin American Assoc. of Comp. Methods in Engineering},
  year = {2005},
  month = oct # {~19--21,},
  note = {\url{http://www.inf.ufes.br/~luciac/papers/CIL-0692.pdf}}
}
[2] G. F. Carey, W. Barth, B. S. Kirk, and J. W. Peterson. Parallel CFD for Flow and Transport Applications Including Unstructured and Adaptive Grids. In Proceedings of Parallel CFD 2004: Multidisciplinary Applications, G. Winter, A. Ecer, J. Periaux, N. Satofuka and P. Fox (Eds), Amsterdam, The Netherlands, October 2005. Elsevier Science B.V. ISBN: 0444520244.
@inproceedings{Carey_2005,
  author = {G.~F.~Carey and W.~Barth and B.~S.~Kirk and J.~W.~Peterson},
  title = {{Parallel CFD for Flow and Transport Applications
              Including Unstructured and Adaptive Grids}},
  booktitle = {Proceedings of Parallel CFD 2004:  Multidisciplinary Applications, G.~Winter,
             A.~Ecer, J.~Periaux, N.~Satofuka and P.~Fox (Eds)},
  publisher = {Elsevier Science B.V.},
  address = {Amsterdam, The Netherlands},
  month = oct,
  year = {2005},
  note = {ISBN: 0444520244}
}

2004

[1] L. Antiga. Imaging and numerical fluid dynamics for the study of the cardiovascular system. In M. Grigioni, editor, III Workshop Bioflumen: Technological innovation and evaluation of medical devices for the cardiovascular system, pages 55-59, Rome, Italy, November 2004. Istituto Superiore di Sanità.
@inproceedings{Antiga_2004,
  author = {L.~Antiga},
  title = {{Imaging and numerical fluid dynamics for the study of the
                 cardiovascular system}},
  booktitle = {{III Workshop Bioflumen:  Technological innovation and evaluation of medical
                 devices for the cardiovascular system}},
  editor = {M.~Grigioni},
  pages = {55--59},
  publisher = {Istituto Superiore di Sanit\`{a}},
  address = {Rome, Italy},
  month = nov,
  year = {2004}
}
[2] G. F. Carey, W. Barth, J. A. Woods, B. S. Kirk, M. L. Anderson, S. Chow, and W. Bangerth. Modeling error and constitutive relations in simulation of flow and transport. Int. J. Numerical Methods in Fluid, 46(12):1211-1236, 2004. http://dx.doi.org/10.1002/fld.797.
@article{Carey_2004b,
  author = {G.~F.~Carey and W.~Barth and J.~A.~Woods
             and B.~S.~Kirk and M.~L.~Anderson and S.~Chow
             and W.~Bangerth},
  title = {Modeling error and constitutive relations in simulation
             of flow and transport},
  journal = {Int. J. Numerical Methods in Fluid},
  year = {2004},
  volume = {46},
  number = {12},
  pages = {1211--1236},
  note = {\url{http://dx.doi.org/10.1002/fld.797}}
}
[3] G. F. Carey, M. Anderson, B. Carnes, and B. S. Kirk. Some aspects of adaptive grid technology related to boundary and interior layers. J. Comput. Appl. Math., 166(1):55-86, 2004. http://dx.doi.org/10.1016/j.cam.2003.09.036.
@article{Carey_2004a,
  author = {G.~F. Carey and M.~Anderson and B.~Carnes and B.~S.~Kirk},
  title = {Some aspects of adaptive grid technology related to boundary and interior layers},
  journal = {J. Comput. Appl. Math.},
  volume = {166},
  number = {1},
  year = {2004},
  issn = {0377-0427},
  pages = {55--86},
  note = {\url{http://dx.doi.org/10.1016/j.cam.2003.09.036}}
}



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