## Please use the following citation to reference libMesh

 [1] B. S. Kirk, J. W. Peterson, R. H. Stogner, and G. F. Carey. libMesh: A C++ Library for Parallel Adaptive Mesh Refinement/Coarsening Simulations. Engineering with Computers, 22(3-4):237-254, 2006. http://dx.doi.org/10.1007/s00366-006-0049-3. @article{libMeshPaper, author = {B.~S.~Kirk and J.~W.~Peterson and R.~H.~Stogner and G.~F.~Carey}, title = {{\texttt{libMesh}: A C++ Library for Parallel Adaptive Mesh Refinement/Coarsening Simulations}}, journal = {Engineering with Computers}, volume = {22}, number = {3--4}, pages = {237--254}, year = {2006}, note = {\url{http://dx.doi.org/10.1007/s00366-006-0049-3}} } 

## Dissertations & Theses

 [1] K. A. L. Gamble. Modeling three-dimensional deformation mechanisms in CANDU reactor fuel elements. Master's thesis, Royal Military College of Canada, May 2014. https://espace.rmc.ca/bitstream/11264/102/1/Gamble,%20Kyle%20-%20Thesis%20Final.pdf. @mastersthesis{Gamble_2014, author = {K.~A.~L.~Gamble}, school = {Royal Military College of Canada}, title = {{Modeling three-dimensional deformation mechanisms in CANDU reactor fuel elements}}, note = {\url{https://espace.rmc.ca/bitstream/11264/102/1/Gamble,%20Kyle%20-%20Thesis%20Final.pdf}}, month = may, year = {2014} }  [2] K. Steih. Reduced basis methods for time-periodic parametric partial differential equations. PhD thesis, Universität Ulm, April 2014. http://vts.uni-ulm.de/docs/2014/9093/vts_9093_13686.pdf. @phdthesis{Steih_2014, author = {K.~Steih}, school = {Universit\"{a}t Ulm}, title = {{Reduced basis methods for time-periodic parametric partial differential equations}}, note = {\url{http://vts.uni-ulm.de/docs/2014/9093/vts_9093_13686.pdf}}, month = apr, year = {2014} }  [3] C. Ryser. Cold ice in an alpine glacier and ice dynamics at the margin of the Greenland ice sheet. PhD thesis, ETH-Zürich, 2014. http://dx.doi.org/10.3929/ethz-a-010129038. @phdthesis{Ryser_Thesis, author = {C.~Ryser}, school = {ETH-Z\"{u}rich}, title = {{Cold ice in an alpine glacier and ice dynamics at the margin of the Greenland ice sheet}}, note = {\url{http://dx.doi.org/10.3929/ethz-a-010129038}}, year = {2014} }  [4] D. F. M. Vasconcelos. Modelo de campo de fases Allen-Cahn baseado em resíduo para a simulação paralela e adaptativa de escoamentos incompressíveis. Master's Thesis, COPPE Universidade Federal do Rio de Janeiro, August 2013. http://www.coc.ufrj.br/index.php/dissertacoes-de-mestrado/378-2013/4280-daniel-francisco-maia-vasconcelos. @mastersthesis{Vasconselos_Thesis, author = {D.~F.~M.~Vasconcelos}, type = {{Master's Thesis}}, school = {COPPE Universidade Federal do Rio de Janeiro}, title = {{Modelo de campo de fases Allen-Cahn baseado em res\'{i}duo para a simula\c{c}\~{a}o paralela e adaptativa de escoamentos incompress\'{i}veis}}, note = {\url{http://www.coc.ufrj.br/index.php/dissertacoes-de-mestrado/378-2013/4280-daniel-francisco-maia-vasconcelos}}, month = aug, year = {2013} }  [5] Z. Petrou. Thermo-electro-mechanical behavior of ferroelectric nanodots. Master's Thesis, ASE-EM dept., The University of Texas at Austin, August 2013. http://hdl.handle.net/2152/21783. @mastersthesis{Petrou_Thesis, author = {Z.~Petrou}, type = {{Master's Thesis}}, school = {ASE-EM dept., The University of Texas at Austin}, title = {{Thermo-electro-mechanical behavior of ferroelectric nanodots}}, note = {\url{http://hdl.handle.net/2152/21783}}, month = aug, year = {2013} }  [6] P.-Y. Trépanier. Modélisation radiobiologique pour la planification des traitements en radiothérapie à partir de données d'imagerie spécifiques aux patients. PhD thesis, Université de Montréal, July 2013. https://papyrus.bib.umontreal.ca/xmlui/bitstream/handle/1866/10241/Trepanier_Pier-Yves_2013_memoire.pdf. @phdthesis{Trepanier_2013, author = {P.-Y.~Tr\'{e}panier}, school = {Universit\'{e} de Montr\'{e}al}, title = {{Mod\'{e}lisation radiobiologique pour la planification des traitements en radioth\'{e}rapie \{a} partir de donn\'{e}es d'imagerie sp\'{e}cifiques aux patients}}, note = {\url{https://papyrus.bib.umontreal.ca/xmlui/bitstream/handle/1866/10241/Trepanier_Pier-Yves_2013_memoire.pdf}}, month = jul, year = 2013 }  [7] A. S. Butterfield. Exploration of the phase field framework MARMOT to include anisotropic grain boundaries with molecular dynamics. Senior thesis (Bachelor of Science), Brigham Young University-Idaho, July 2013. http://dx.doi.org/10.2172/1093887, http://www.byui.edu/Documents/physics/Theses/Aaron_ButterfieldS13.pdf. @phdthesis{Butterfield_2013, author = {A.~S.~Butterfield}, school = {Brigham Young University-Idaho}, title = {{Exploration of the phase field framework MARMOT to include anisotropic grain boundaries with molecular dynamics}}, note = {\url{http://dx.doi.org/10.2172/1093887}, \url{http://www.byui.edu/Documents/physics/Theses/Aaron_ButterfieldS13.pdf}}, month = jul, type = {{Senior thesis (Bachelor of Science)}}, year = {2013} }  [8] M. C. Teague. Characterization and modeling of high burn-up mixed oxide fuel. PhD thesis, Colorado School of Mines, May 2013. http://hdl.handle.net/10217/78991. @phdthesis{Teague_2013, author = {M.~C.~Teague}, school = {Colorado School of Mines}, title = {{Characterization and modeling of high burn-up mixed oxide fuel}}, note = {\url{http://hdl.handle.net/10217/78991}}, month = may, year = {2013} }  [9] J. Huber. Interior-point methods for PDE-constrained optimization. PhD thesis, University of Basel, Switzerland, April 23, 2013. http://edoc.unibas.ch/28422/1/DisElHuberJohannes.pdf. @phdthesis{Huber_2013, author = {J.~Huber}, school = {University of Basel, Switzerland}, title = {{Interior-point methods for PDE-constrained optimization}}, note = {\url{http://edoc.unibas.ch/28422/1/DisElHuberJohannes.pdf}}, month = apr # {~23,}, year = {2013} }  [10] V. V. Garg. Coupled flow systems, adjoint techniques and uncertainty quantification. PhD thesis, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, August 2012. http://repositories.lib.utexas.edu/handle/2152/ETD-UT-2012-08-6034. @phdthesis{Garg_thesis, author = {V.~V.~Garg}, school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin}, title = {{Coupled flow systems, adjoint techniques and uncertainty quantification}}, note = {\url{http://repositories.lib.utexas.edu/handle/2152/ETD-UT-2012-08-6034}}, month = aug, year = {2012} }  [11] A. L. Rossa. Parallel adaptive simulation of incompressible viscous flows using stabilized finite elements. PhD thesis, Department of Civil Engineering, COPPE/UFRJ, March 2012. http://www.coc.ufrj.br/index.php/teses-de-doutorado/156-2012/2242-andre-luis-rossa#abstract. @phdthesis{Rossa_thesis, author = {A.~L.~Rossa}, school = {Department of Civil Engineering, COPPE/UFRJ}, title = {{Parallel adaptive simulation of incompressible viscous flows using stabilized finite elements}}, note = {\url{http://www.coc.ufrj.br/index.php/teses-de-doutorado/156-2012/2242-andre-luis-rossa#abstract}}, month = mar, year = {2012} }  [12] G. Bornia. Analysis of optimal control problems for the incompressible MHD equations and implementation in a finite element multiphysics code. PhD thesis, Università di Bologna, 2012. http://amsdottorato.cib.unibo.it/4868/1/giorgio_bornia_tesi.pdf. @phdthesis{Bornia_thesis, author = {G.~Bornia}, school = {Universit\{a} di Bologna}, title = {{Analysis of optimal control problems for the incompressible MHD equations and implementation in a finite element multiphysics code}}, note = {\url{http://amsdottorato.cib.unibo.it/4868/1/giorgio_bornia_tesi.pdf}}, year = {2012} }  [13] K. Lee. Understanding new regimes for light-matter interactions. PhD thesis, Massachusetts Institute of Technology, June 2011. http://dspace.mit.edu/handle/1721.1/66018. @phdthesis{Lee_dissertation, author = {K.~Lee}, school = {Massachusetts Institute of Technology}, title = {{Understanding new regimes for light-matter interactions}}, note = {\url{http://dspace.mit.edu/handle/1721.1/66018}}, month = jun, year = {2011} }  [14] J. J. Camata. Estratégias computacionais de alto desempenho aplicadas ao método dos elementos finitos. PhD thesis, COPPE Universidade Federal do Rio de Janeiro, May 2011. http://objdig.ufrj.br/60/teses/coppe_d/JoseJeronimoCamata.pdf. @phdthesis{Camata_2011, author = {J.~J.~Camata}, school = {COPPE Universidade Federal do Rio de Janeiro}, title = {{Estrat\'{e}gias computacionais de alto desempenho aplicadas ao m\'{e}todo dos elementos finitos}}, note = {\url{http://objdig.ufrj.br/60/teses/coppe_d/JoseJeronimoCamata.pdf}}, month = may, year = {2011} }  [15] A. J. Hawkins-Daarud. Toward a predictive model of tumor growth. PhD thesis, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, May 2011. http://repositories.lib.utexas.edu/handle/2152/ETD-UT-2011-05-3395. @phdthesis{HawkinsDaarud_thesis, author = {A.~J.~Hawkins-Daarud}, school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin}, title = {{Toward a predictive model of tumor growth}}, note = {\url{http://repositories.lib.utexas.edu/handle/2152/ETD-UT-2011-05-3395}}, month = may, year = {2011} }  [16] L. Nagler. Simulation of sound transmission through poroelastic plate-like structures. PhD thesis, Graz University of Technology, Institute of Applied Mechanics, February 2011. http://fmysql.tu-graz.ac.at/~karl/verlagspdf/nagler_buch_13052011.pdf. @phdthesis{Nagler_dissertation, author = {L.~Nagler}, school = {Graz University of Technology, Institute of Applied Mechanics}, title = {{Simulation of sound transmission through poroelastic plate-like structures}}, note = {\url{http://fmysql.tu-graz.ac.at/~karl/verlagspdf/nagler_buch_13052011.pdf}}, month = feb, year = {2011} }  [17] J. A. Kallen-Brown. Computational methods for ice flow simulation. PhD thesis, ETH-Zürich, 2011. http://dx.doi.org/10.3929/ethz-a-007316245. @phdthesis{Brown_thesis, author = {J.~A.~Kallen-Brown}, school = {ETH-Z\"{u}rich}, title = {{Computational methods for ice flow simulation}}, note = {\url{http://dx.doi.org/10.3929/ethz-a-007316245}}, year = {2011} }  [18] V. S. Mahadevan. High resolution numerical methods for coupled non-linear multi-physics simulations with applications in reactor analysis. PhD thesis, Texas A&M University, August 2010. http://repository.tamu.edu/bitstream/handle/1969.1/ETD-TAMU-2010-08-8579/MAHADEVAN-DISSERTATION.pdf. @phdthesis{Mahadevan_2010, author = {V.~S.~Mahadevan}, school = {Texas A\&M University}, title = {{High resolution numerical methods for coupled non-linear multi-physics simulations with applications in reactor analysis}}, note = {\url{http://repository.tamu.edu/bitstream/handle/1969.1/ETD-TAMU-2010-08-8579/MAHADEVAN-DISSERTATION.pdf}}, month = aug, year = {2010} }  [19] M. Nenning. Infinite Elements for Elasto- and Poroelastodynamics. PhD thesis, Graz University of Technology, Institute of Applied Mechanics, August 2010. http://fmysql.tu-graz.ac.at/~karl/verlagspdf/buch_nenning_10112010.pdf. @phdthesis{Nenning_Dissertation, author = {M.~Nenning}, school = {Graz University of Technology, Institute of Applied Mechanics}, title = {{Infinite Elements for Elasto- and Poroelastodynamics}}, note = {\url{http://fmysql.tu-graz.ac.at/~karl/verlagspdf/buch_nenning_10112010.pdf}}, month = aug, year = {2010} }  [20] J. A. Dec. Three dimensional finite element ablative thermal response analysis applied to heatshield penetration design. PhD thesis, Georgia Institute of Technology, May 2010. https://smartech.gatech.edu/handle/1853/39588. @phdthesis{Dec_2010, author = {J.~A.~Dec}, school = {Georgia Institute of Technology}, title = {{Three dimensional finite element ablative thermal response analysis applied to heatshield penetration design}}, note = {\url{https://smartech.gatech.edu/handle/1853/39588}}, month = may, year = {2010} }  [21] E. Petrolati. Study and Optimization of Polariton LASERs. PhD thesis, Università Degli Studi Di Roma “Tor Vergata”, December 2008. http://art.torvergata.it/bitstream/2108/1116/1/FINALE.pdf. @phdthesis{Petrolati_Dissertation, author = {E.~Petrolati}, school = {Universit\{a} Degli Studi Di Roma Tor Vergata''}, title = {{Study and Optimization of Polariton LASERs}}, note = {\url{http://art.torvergata.it/bitstream/2108/1116/1/FINALE.pdf}}, month = dec, year = {2008} }  [22] K. Nam. Optimization of paths and locations of water quality monitoring systems in surface water environments. PhD thesis, Georgia Institute of Technology, August 2008. https://smartech.gatech.edu/jspui/bitstream/1853/24745/1/nam_kijin_200808_phd.pdf. @phdthesis{Nam_2008, author = {K.~Nam}, school = {Georgia Institute of Technology}, title = {{Optimization of paths and locations of water quality monitoring systems in surface water environments}}, note = {\url{https://smartech.gatech.edu/jspui/bitstream/1853/24745/1/nam_kijin_200808_phd.pdf}}, month = aug, year = {2008} }  [23] R. H. Stogner. Parallel Adaptive C1 Macro-Elements for Nonlinear Thin Film and Non-Newtonian Flow Problems. PhD thesis, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, August 2008. http://users.ices.utexas.edu/~roystgnr/dissertation/dissertation-stogner.pdf. @phdthesis{Stogner_Dissertation, author = {R.~H.~Stogner}, school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin}, title = {{Parallel Adaptive C1 Macro-Elements for Nonlinear Thin Film and Non-Newtonian Flow Problems}}, note = {\url{http://users.ices.utexas.edu/~roystgnr/dissertation/dissertation-stogner.pdf}}, month = aug, year = {2008} }  [24] F. Rammerstorfer. Simulation von Wellenausbreitung unter Verwendung von Perfectly Matched Layers'. PhD thesis, Technische Universität Graz, June 2008. http://portal.tugraz.at/portal/page/portal/Files/i2610/files/Lehre/Abschlussarbeiten/DA/rammerstorfer_dipl.pdf. @phdthesis{Rammerstorfer_2008, author = {F.~Rammerstorfer}, school = {Technische Universit\"{a}t Graz}, title = {{Simulation von Wellenausbreitung unter Verwendung von Perfectly Matched Layers'}}, note = {\url{http://portal.tugraz.at/portal/page/portal/Files/i2610/files/Lehre/Abschlussarbeiten/DA/rammerstorfer_dipl.pdf}}, month = jun, year = {2008} }  [25] S. Wang. Krylov subspace methods for topology optimization on adaptive meshes. PhD thesis, University of Illinois at Urbana-Champaign, May 2008. http://gradworks.umi.com/32/90/3290423.html. @phdthesis{Wang_Dissertation, author = {S.~Wang}, school = {University of Illinois at Urbana-Champaign}, title = {{Krylov subspace methods for topology optimization on adaptive meshes}}, note = {\url{http://gradworks.umi.com/32/90/3290423.html}}, month = may, year = {2008} }  [26] J. W. Peterson. Parallel Adaptive Finite Element Methods for Problems in Natural Convection. PhD thesis, ASE-EM dept., The University of Texas at Austin, May 2008. http://www.cfdlab.ae.utexas.edu/~peterson/diss.pdf. @phdthesis{Peterson_Dissertation, author = {J.~W.~Peterson}, school = {ASE-EM dept., The University of Texas at Austin}, title = {{Parallel Adaptive Finite Element Methods for Problems in Natural Convection}}, note = {\url{http://www.cfdlab.ae.utexas.edu/~peterson/diss.pdf}}, month = may, year = {2008} }  [27] D. J. Knezevic. Analysis and Implementation of Numerical Methods for Simulating Dilute Polymeric Fluids. PhD thesis, University of Oxford, Balliol College, Michaelmas Term 2008. http://www.comlab.ox.ac.uk/files/1416/knezevic-thesis.pdf. @phdthesis{Knezevic_Dissertation, author = {D.~J.~Knezevic}, school = {University of Oxford, Balliol College}, title = {{Analysis and Implementation of Numerical Methods for Simulating Dilute Polymeric Fluids}}, note = {\url{http://www.comlab.ox.ac.uk/files/1416/knezevic-thesis.pdf}}, month = {Michaelmas Term}, year = {2008} }  [28] B. S. Kirk. Adaptive Finite Element Simulation of Flow and Transport Applications on Parallel Computers. PhD thesis, ASE-EM dept., The University of Texas at Austin, May 2007. http://www.cfdlab.ae.utexas.edu/~benkirk/dissertation.pdf. @phdthesis{Kirk_Dissertation, author = {B.~S.~Kirk}, school = {ASE-EM dept., The University of Texas at Austin}, title = {{Adaptive Finite Element Simulation of Flow and Transport Applications on Parallel Computers}}, note = {\url{http://www.cfdlab.ae.utexas.edu/~benkirk/dissertation.pdf}}, month = may, year = {2007} }  [29] J. W. Peterson. A Numerical Investigation of Bénard Convection in Small Aspect Ratio Containers. Master's Report, ASE-EM dept., The University of Texas at Austin, May 2003. http://www.cfdlab.ae.utexas.edu/~peterson/masters.pdf. @mastersthesis{Peterson_Thesis, author = {J.~W.~Peterson}, type = {{Master's Report}}, school = {ASE-EM dept., The University of Texas at Austin}, title = {{A Numerical Investigation of B\'{e}nard Convection in Small Aspect Ratio Containers}}, note = {\url{http://www.cfdlab.ae.utexas.edu/~peterson/masters.pdf}}, month = may, year = {2003} } 

## Preprints

 [1] A. Corsini, F. Rispoli, A. G. Sheard, K. Takizawa, T. E. Tezduyar, and P. Venturini. A variational multiscale method for particle-cloud tracking in turbomachinery flows. Computational Mechanics, July 2014. http://dx.doi.org/10.1007/s00466-014-1050-0. @article{Corsini_2014, author = {A.~Corsini and F.~Rispoli and A.~G.~Sheard and K.~Takizawa and T.~E.~Tezduyar and P.~Venturini}, title = {{A variational multiscale method for particle-cloud tracking in turbomachinery flows}}, journal = {Computational Mechanics}, month = jul, year = 2014, note = {\url{http://dx.doi.org/10.1007/s00466-014-1050-0}} }  [2] M. E. Cournoyer. Fire modeling of an emerging fire suppression system. Journal of Chemical Health and Safety, July/August 2014. http://dx.doi.org/10.1016/j.jchas.2014.05.011. @article{Cournoyer_2014, author = {M.~E.~Cournoyer}, title = {{Fire modeling of an emerging fire suppression system}}, journal = {Journal of Chemical Health and Safety}, month = jul # {/} # aug, year = 2014, note = {\url{http://dx.doi.org/10.1016/j.jchas.2014.05.011}} }  [3] F. Ballarin, A. Manzoni, A. Quarteroni, and G. Rozza. Supremizer stabilization of POD-Galerkin approximation of parametrized Navier-Stokes equations. Technical Report MOX:13/2014, MATHICSE:23.2014, MOX, Dipartimento di Matematica, “F. Brioschi” Politecnico di Milano and MATHICSE, École Polytechnique Fédérale de Lausanne, April 2014. http://mox.polimi.it/it/progetti/pubblicazioni/quaderni/13-2014.pdf, http://mathicse.epfl.ch/page-68906-en.html. @techreport{Ballarin_2014, author = {F.~Ballarin and A.~Manzoni and A.~Quarteroni and G.~Rozza}, title = {{Supremizer stabilization of POD-Galerkin approximation of parametrized Navier-Stokes equations}}, institution = {MOX, Dipartimento di Matematica, F.~Brioschi'' Politecnico di Milano and MATHICSE, \'{E}cole Polytechnique F\'{e}d\'{e}rale de Lausanne}, month = apr, year = {2014}, number = {MOX:13/2014, MATHICSE:23.2014}, note = {\url{http://mox.polimi.it/it/progetti/pubblicazioni/quaderni/13-2014.pdf}, \url{http://mathicse.epfl.ch/page-68906-en.html}} }  [4] H. Gao, H. Wang, C. Berry, X. Luo, and B. E. Griffith. Quasi-static image-based immersed boundary-finite element model of left ventricle under diastolic loading. International Journal for Numerical Methods in Biomedical Engineering, 2014. http://dx.doi.org/10.1002/cnm.2652. @article{Gao_2014, author = {H.~Gao and H.~Wang and C.~Berry and X.~Luo and B.~E.~Griffith}, title = {{Quasi-static image-based immersed boundary-finite element model of left ventricle under diastolic loading}}, journal = {International Journal for Numerical Methods in Biomedical Engineering}, year = 2014, note = {\url{http://dx.doi.org/10.1002/cnm.2652}} }  [5] E. E. Prudencio, P. T. Bauman, D. Faghihi, K. Ravi-Chandar, and J. T. Oden. A computational framework for dynamic data driven material damage control, based on Bayesian inference and model selection. International Journal for Numerical Methods in Engineering, 2014. http://dx.doi.org/10.1002/nme.4669. @article{Prudencio_2014, author = {E.~E.~Prudencio and P.~T.~Bauman and D.~Faghihi and K.~Ravi-Chandar and J.~T.~Oden}, title = {{A computational framework for dynamic data driven material damage control, based on Bayesian inference and model selection}}, journal = {International Journal for Numerical Methods in Engineering}, year = 2014, note = {\url{http://dx.doi.org/10.1002/nme.4669}} }  [6] Y. Zhu, X. Y. Luo, H. Gao, C. Mccomb, and C. Berry. A numerical study of a heart phantom model. International Journal of Computer Mathematics, 2013. http://dx.doi.org/10.1080/00207160.2013.854337. @article{Zhu_2013b, author = {Y.~Zhu and X.~Y.~Luo and H.~Gao and C.~Mccomb and C.~Berry}, title = {{A numerical study of a heart phantom model}}, journal = {International Journal of Computer Mathematics}, year = 2013, note = {\url{http://dx.doi.org/10.1080/00207160.2013.854337}} }  [7] B. E. Griffith and X. Luo. Hybrid finite difference/finite element version of the immersed boundary method. PREPRINT, Submitted to IJNME, 2012. http://www.math.nyu.edu/~griffith/docs/griffith_luo_ibfem.pdf. @article{Griffith_2012, author = {B.~E.~Griffith and X.~Luo}, title = {{Hybrid finite difference/finite element version of the immersed boundary method}}, journal = {PREPRINT, Submitted to IJNME}, year = 2012, note = {\url{http://www.math.nyu.edu/~griffith/docs/griffith_luo_ibfem.pdf}} } 

## 2015

 [1] D. Król, J. Harris, and D. Zydek. Hybrid GPU/CPU approach to multiphysics simulation. In H. Selvaraj, D. Zydek, and G. Chmaj, editors, Progress in Systems Engineering, volume 1089 of Advances in Intelligent Systems and Computing, pages 893-899. Springer International, 2015. http://dx.doi.org/10.1007/978-3-319-08422-0_130. @inproceedings{Krol_2015, author = {D.~Kr\'{o}l and J.~Harris and D.~Zydek}, title = {{Hybrid GPU/CPU approach to multiphysics simulation}}, booktitle = {{Progress in Systems Engineering}}, series = {Advances in Intelligent Systems and Computing}, volume = 1089, editor = {H.~Selvaraj and D.~Zydek and G.~Chmaj}, pages = {893--899}, publisher = {Springer International}, year = {2015}, note = {\url{http://dx.doi.org/10.1007/978-3-319-08422-0_130}} } 

## 2014

 [1] E. E. Prudencio, P. T. Bauman, S. V. Williams, D. Faghihi, K. Ravi-Chandar, and J. T. Oden. Real-time inference of stochastic damage in composite materials. Composites Part B: Engineering, 67:209-219, November 2014. http://dx.doi.org/10.1016/j.compositesb.2014.07.004. @article{Prudencio_2014b, author = {E.~E.~Prudencio and P.~T.~Bauman and S.~V.~Williams and D.~Faghihi and K.~Ravi-Chandar and J.~T.~Oden}, title = {{Real-time inference of stochastic damage in composite materials}}, journal = {Composites Part B: Engineering}, year = 2014, volume = 67, month = nov, pages = {209--219}, note = {\url{http://dx.doi.org/10.1016/j.compositesb.2014.07.004}} }  [2] O. Courty, A. T. Motta, and J. D. Hales. Modeling and simulation of hydrogen behavior in Zircaloy-4 fuel cladding. Journal of Nuclear Materials, 452(1-3):311-320, September 2014. http://dx.doi.org/10.1016/j.jnucmat.2014.05.013. @article{Courty_2014, author = {O.~Courty and A.~T.~Motta and J.~D.~Hales}, title = {{Modeling and simulation of hydrogen behavior in Zircaloy-4 fuel cladding}}, journal = {Journal of Nuclear Materials}, year = 2014, volume = {452}, number = {1--3}, pages = {311--320}, month = sep, note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2014.05.013}} }  [3] J. D. Hales, S. R. Novascone, B. W. Spencer, R. L. Williamson, G. Pastore, and D. M. Perez. Verification of the BISON fuel performance code. Annals of Nuclear Energy, 71:81-90, September 2014. http://dx.doi.org/10.1016/j.anucene.2014.03.027. @article{Hales_2014, author = {J.~D.~Hales and S.~R.~Novascone and B.~W.~Spencer and R.~L.~Williamson and G.~Pastore and D.~M.~Perez}, title = {{Verification of the BISON fuel performance code}}, journal = {Annals of Nuclear Energy}, year = 2014, volume = 71, month = sep, pages = {81--90}, note = {\url{http://dx.doi.org/10.1016/j.anucene.2014.03.027}} }  [4] I. Kalashnikova, M. F. Barone, J. A. Fike, S. Arunajatesan, and B. G. van Bloemen Waanders. Approaches for building stable projection-based reduced order models. In Reduced-Order Modeling (ROM) Workshop, Livermore, CA. Sandia National Laboratories, SAND2014-16583PE, August 7, 2014. http://www.sandia.gov/~ikalash/kalash_rom_day_aug7_2014_final.pdf. @inproceedings{Kalashnikova_2014b, author = {I.~Kalashnikova and M.~F.~Barone and J.~A.~Fike and S.~Arunajatesan and B.~G.~van Bloemen Waanders}, title = {{Approaches for building stable projection-based reduced order models}}, booktitle = {{Reduced-Order Modeling (ROM) Workshop, Livermore, CA}}, publisher = {Sandia National Laboratories, SAND2014-16583PE}, month = aug # {~7,}, year = {2014}, note = {\url{http://www.sandia.gov/~ikalash/kalash_rom_day_aug7_2014_final.pdf}} }  [5] D. Schillinger, S. J. Hossain, and T. J. R. Hughes. Reduced Bézier element quadrature rules for quadratic and cubic splines in isogeometric analysis. Computer Methods in Applied Mechanics and Engineering, 277:1-45, August 2014. http://dx.doi.org/10.1016/j.cma.2014.04.008. @article{Schillinger_2014, author = {D.~Schillinger and S.~J.~Hossain and T.~J.~R.~Hughes}, title = {{Reduced B\'{e}zier element quadrature rules for quadratic and cubic splines in isogeometric analysis}}, journal = {Computer Methods in Applied Mechanics and Engineering}, year = 2014, volume = 277, pages = {1--45}, month = aug, note = {\url{http://dx.doi.org/10.1016/j.cma.2014.04.008}} }  [6] D. A. Andersson, P. Garcia, X.-Y. Liu, G. Pastore, M. Tonks, P. Millett, B. Dorado, D. R. Gaston, D. Andrs, R. L. Williamson, R. C. Martineau, B. P. Uberuaga, and C. R. Stanek. Atomistic modeling of intrinsic and radiation-enhanced fission gas (Xe) diffusion in UO2x: Implications for nuclear fuel performance modeling. Journal of Nuclear Materials, 451(1-3):225-242, August 2014. http://dx.doi.org/10.1016/j.jnucmat.2014.03.041. @article{Andersson_2014, author = {D.~A.~Andersson and P.~Garcia and X.-Y.~Liu and G.~Pastore and M.~Tonks and P.~Millett and B.~Dorado and D.~R.~Gaston and D.~Andrs and R.~L.~Williamson and R.~C.~Martineau and B.~P.~Uberuaga and C.~R.~Stanek}, title = {{Atomistic modeling of intrinsic and radiation-enhanced fission gas (Xe) diffusion in UO$_{2\pm x}$: Implications for nuclear fuel performance modeling}}, journal = {Journal of Nuclear Materials}, year = 2014, volume = 451, number = {1--3}, pages = {225--242}, month = aug, note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2014.03.041}} }  [7] R. L. Williamson, J. D. Hales, D. M. Perez, S. R. Novascone, and G. Pastore. BISON Software V&V Plan. Technical Report INL/EXT-14-31671, Idaho National Laboratory, July 2014. http://www.osti.gov/scitech/biblio/1149007. @techreport{Williamson_2014, author = {R.~L.~Williamson and J.~D.~Hales and D.~M.~Perez and S.~R.~Novascone and G.~Pastore}, title = {{BISON Software V\&V Plan}}, institution = {Idaho National Laboratory}, day = {1}, month = jul, year = {2014}, number = {INL/EXT-14-31671}, note = {\url{http://www.osti.gov/scitech/biblio/1149007}} }  [8] E. Yeniaras, D. T. Fuentes, S. J. Fahrenholtz, J. S. Weinberg, F. Maier, J. D. Hazle, and R. J. Stafford. Design and initial evaluation of a treatment planning software system for MRI-guided laser ablation in the brain. International Journal of Computer Assisted Radiology and Surgery, 9(4):659-667, July 2014. http://dx.doi.org/10.1007/s11548-013-0948-x. @article{Yeniaras_2014, author = {E.~Yeniaras and D.~T.~Fuentes and S.~J.~Fahrenholtz and J.~S.~Weinberg and F.~Maier and J.~D.~Hazle and R.~J.~Stafford}, title = {{Design and initial evaluation of a treatment planning software system for MRI-guided laser ablation in the brain}}, journal = {International Journal of Computer Assisted Radiology and Surgery}, month = jul, year = 2014, volume = 9, number = 4, pages = {659--667}, note = {\url{http://dx.doi.org/10.1007/s11548-013-0948-x}} }  [9] D. F. M. Vasconcelos, A. L. Rossa, and A. L. G. A. Coutinho. A residual-based Allen-Cahn phase field model for the mixture of incompressible fluid flows. International Journal for Numerical Methods in Fluids, 75(9):645-667, July 2014. http://dx.doi.org/10.1002/fld.3910. @article{Vasconcelos_2014, author = {D.~F.~M.~Vasconcelos and A.~L.~Rossa and A.~L.~G.~A.~Coutinho}, title = {A residual-based {A}llen-{C}ahn phase field model for the mixture of incompressible fluid flows}, journal = {International Journal for Numerical Methods in Fluids}, month = jul, year = 2014, volume = 75, number = 9, pages = {645--667}, note = {\url{http://dx.doi.org/10.1002/fld.3910}} }  [10] S. Muppidi, M. Barnhardt, G. E. Palmer, N. N. Mansour, M. Wright, and J. Lachaud. Toward ablative material response coupling in DPLR. In 11th AIAA/ASME Joint Thermophysics and Heat Transfer Conference, June 16-20, 2014. http://arc.aiaa.org/doi/abs/10.2514/6.2014-2120. @inproceedings{Muppidi_2014, author = {S.~Muppidi and M.~Barnhardt and G.~E.~Palmer and N.~N.~Mansour and M.~Wright and J.~Lachaud}, title = {{Toward ablative material response coupling in DPLR}}, booktitle = {{11th AIAA/ASME Joint Thermophysics and Heat Transfer Conference}}, month = jun # {~16--20,}, year = {2014}, note = {\url{http://arc.aiaa.org/doi/abs/10.2514/6.2014-2120}} }  [11] G. E. Palmer, M. Barnhardt, B. Kirk, A. J. Amar, Y.-K. Chen, and N. N. Mansour. Coupled CFD-ablation response model simulations using the libMesh framework. In 11th AIAA/ASME Joint Thermophysics and Heat Transfer Conference, June 16-20, 2014. http://arc.aiaa.org/doi/abs/10.2514/6.2014-2123. @inproceedings{Palmer_2014, author = {G.~E.~Palmer and M.~Barnhardt and B.~Kirk and A.~J.~Amar and Y.-K.~Chen and N.~N.~Mansour}, title = {{Coupled CFD-ablation response model simulations using the libMesh framework}}, booktitle = {{11th AIAA/ASME Joint Thermophysics and Heat Transfer Conference}}, month = jun # {~16--20,}, year = {2014}, note = {\url{http://arc.aiaa.org/doi/abs/10.2514/6.2014-2123}} }  [12] M. O. Delchini, R. A. Berry, and J. Ragusa. RELAP-7 Numerical Stabilization: Entropy Viscosity Method. Technical Report INL/EXT-14-32352, Idaho National Laboratory, June 2014. http://www.osti.gov/scitech/biblio/1149027. @techreport{Delchini_2014, author = {M.~O.~Delchini and R.~A.~Berry and J.~Ragusa}, title = {{RELAP-7 Numerical Stabilization: Entropy Viscosity Method}}, institution = {Idaho National Laboratory}, day = {1}, month = jun, year = {2014}, number = {INL/EXT-14-32352}, note = {\url{http://www.osti.gov/scitech/biblio/1149027}} }  [13] I. Kalashnikova, S. Arunajatesan, M. F. Barone, B. G. van Bloemen Waanders, and J. A. Fike. Reduced order modeling for prediction and control of large-scale systems. Technical Report SAND2014-4693, Sandia National Laboratories, May 2014. http://www.sandia.gov/~ikalash/ROM_Final_SAND_report.pdf. @techreport{Kalashnikova_2014, author = {I.~Kalashnikova and S.~Arunajatesan and M.~F.~Barone and B.~G.~van Bloemen Waanders and J.~A.~Fike}, title = {{Reduced order modeling for prediction and control of large-scale systems}}, institution = {Sandia National Laboratories}, month = may, year = {2014}, number = {SAND2014-4693}, note = {\url{http://www.sandia.gov/~ikalash/ROM_Final_SAND_report.pdf}} }  [14] J. M. Gimenez, N. M. Nigro, and S. R. Idelsohn. Evaluating the performance of the particle finite element method in parallel architectures. Computational Particle Mechanics, 1(1):103-116, May 2014. http://dx.doi.org/10.1007/s40571-014-0009-4. @article{Gimenez_2014, author = {J.~M.~Gimenez and N.~M.~Nigro and S.~R.~Idelsohn}, title = {{Evaluating the performance of the particle finite element method in parallel architectures}}, journal = {Computational Particle Mechanics}, year = 2014, month = may, volume = 1, number = 1, pages = {103--116}, note = {\url{http://dx.doi.org/10.1007/s40571-014-0009-4}} }  [15] L. Nagler, P. Rong, M. Schanz, and O. von Estorff. Sound transmission through a poroelastic layered panel. Computational Mechanics, 53(4):549-560, April 2014. http://dx.doi.org/10.1007/s00466-013-0916-x. @article{Nagler_2014, author = {L.~Nagler and P.~Rong and M.~Schanz and O.~von Estorff}, title = {{Sound transmission through a poroelastic layered panel}}, journal = {Computational Mechanics}, year = 2014, volume = {53}, number = {4}, pages = {549--560}, month = apr, note = {\url{http://dx.doi.org/10.1007/s00466-013-0916-x}} }  [16] B. S. Kirk, R. H. Stogner, P. T. Bauman, and T. A. Oliver. Modeling hypersonic entry with the Fully-Implicit Navier-Stokes (FIN-S) stabilized finite element flow solver. Computers & Fluids, 92:281-292, March 2014. http://dx.doi.org/10.1016/j.compfluid.2013.10.003. @article{Kirk_2014, author = {B.~S.~Kirk and R.~H.~Stogner and P.~T.~Bauman and T.~A.~Oliver}, title = {{Modeling hypersonic entry with the Fully-Implicit Navier-Stokes (\textsc{FIN-S}) stabilized finite element flow solver}}, journal = {Computers \& Fluids}, year = 2014, volume = 92, month = mar, pages = {281--292}, note = {\url{http://dx.doi.org/10.1016/j.compfluid.2013.10.003}} }  [17] C. Ryser, M. P. Lüthi, L. C. Andrews, M. J. Hoffman, G. A. Catania, R. L. Hawley, T. A. Neumann, and S. S. Kristensen. Sustained high basal motion of the Greenland ice sheet revealed by borehole deformation. Journal of Glaciology, 60(222):647-660, 2014. http://dx.doi.org/10.3189/2014JoG13J196. @article{Ryser_2014, author = {C.~Ryser and M.~P.~L\"{u}thi and L.~C.~Andrews and M.~J.~Hoffman and G.~A.~Catania and R.~L.~Hawley and T.~A.~Neumann and S.~S.~Kristensen}, title = {{Sustained high basal motion of the Greenland ice sheet revealed by borehole deformation}}, journal = {Journal of Glaciology}, year = 2014, volume = 60, number = 222, pages = {647--660}, note = {\url{http://dx.doi.org/10.3189/2014JoG13J196}} }  [18] S. Vallaghé and A. T. Patera. The static condensation reduced basis element method for a mixed-mean conjugate heat exchanger model. SIAM Journal on Scientific Computing, 36(3):B294-B320, 2014. http://dx.doi.org/10.1137/120887709. @article{Vallaghe_2014, author = {S.~Vallagh\'{e} and A.~T.~Patera}, title = {{The static condensation reduced basis element method for a mixed-mean conjugate heat exchanger model}}, journal = {SIAM Journal on Scientific Computing}, year = 2014, volume = 36, number = 3, pages = {B294--B320}, note = {\url{http://dx.doi.org/10.1137/120887709}} }  [19] M. Ellis, J. Ortensi, Y. Wang, K. Smith, and R. C. Martineau. Initial RattleSnake Calculations of the Hot Zero Power BEAVRS. Technical Report INL/EXT-13-30903, Idaho National Laboratory, January 2014. http://www.inl.gov/technicalpublications/Documents/5974389.pdf. @techreport{Ellis_2014, author = {M.~Ellis and J.~Ortensi and Y.~Wang and K.~Smith and R.~C.~Martineau}, title = {{Initial RattleSnake Calculations of the Hot Zero Power BEAVRS}}, institution = {Idaho National Laboratory}, month = jan, year = {2014}, number = {INL/EXT-13-30903}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5974389.pdf}} }  [20] M. G. Schmidt, R. A. Sauer, and A. E. Ismail. Multiscale treatment of mechanical contact problems involving thin polymeric layers. Modelling and Simulation in Materials Science and Engineering, 22:045012 (30pp), 2014. http://dx.doi.org/10.1088/0965-0393/22/4/045012. @article{Schmidt_2014, author = {M.~G.~Schmidt and R.~A.~Sauer and A.~E.~Ismail}, title = {{Multiscale treatment of mechanical contact problems involving thin polymeric layers}}, journal = {Modelling and Simulation in Materials Science and Engineering}, year = 2014, volume = 22, pages = {045012 (30pp)}, note = {\url{http://dx.doi.org/10.1088/0965-0393/22/4/045012}} }  [21] V. Vavourakis, A. Kazakidi, D. P. Tsakiris, and J. A. Ekaterinaris. A nonlinear dynamic finite element approach for simulating muscular hydrostats. Computer Methods in Biomechanics and Biomedical Engineering, 17(8):917-931, 2014. http://dx.doi.org/10.1080/10255842.2012.723702. @article{Vavourakis_2014, author = {V.~Vavourakis and A.~Kazakidi and D.~P.~Tsakiris and J.~A.~Ekaterinaris}, title = {{A nonlinear dynamic finite element approach for simulating muscular hydrostats}}, journal = {Computer Methods in Biomechanics and Biomedical Engineering}, volume = {17}, number = {8}, pages = {917--931}, year = 2014, note = {\url{http://dx.doi.org/10.1080/10255842.2012.723702}} }  [22] M. P. Short, D. Gaston, C. R. Stanek, and S. Yip. A perspective on coupled multiscale simulation and validation in nuclear materials. Materials Research Society Bulletin, 39(1):71-77, January 2014. http://dx.doi.org/10.1557/mrs.2013.315. @article{Short_2014, author = {M.~P.~Short and D.~Gaston and C.~R.~Stanek and S.~Yip}, title = {{A perspective on coupled multiscale simulation and validation in nuclear materials}}, journal = {Materials Research Society Bulletin}, year = 2014, month = jan, volume = 39, number = 1, pages = {71--77}, note = {\url{http://dx.doi.org/10.1557/mrs.2013.315}} }  [23] J. L. Eftang and A. T. Patera. A port-reduced static condensation reduced basis element method for large component-synthesized structures: approximation and a posteriori error estimation. Advanced Modeling and Simulation in Engineering Sciences, 1(3), January 2014. http://dx.doi.org/10.1186/2213-7467-1-3. @article{Eftang_2014, author = {J.~L.~Eftang and A.~T.~Patera}, title = {{A port-reduced static condensation reduced basis element method for large component-synthesized structures: approximation and a posteriori error estimation}}, journal = {Advanced Modeling and Simulation in Engineering Sciences}, year = 2014, month = jan, volume = 1, number = 3, note = {\url{http://dx.doi.org/10.1186/2213-7467-1-3}} }  [24] I. D. Neveln, R. Bale, A. P. S. Bhalla, O. M. Curet, N. A. Patankar, and M. A. Maciver. Undulating fins produce off-axis thrust and flow structures. The Journal of Experimental Biology, 217(2):201-213, 2014. http://dx.doi.org/10.1242/jeb.091520. @article{Neveln_2014, author = {I.~D.~Neveln and R.~Bale and A.~P.~S.~Bhalla and O.~M.~Curet and N.~A.~Patankar and M.~A.~Maciver}, title = {{Undulating fins produce off-axis thrust and flow structures}}, journal = {The Journal of Experimental Biology}, year = 2014, volume = 217, number = 2, pages = {201--213}, note = {\url{http://dx.doi.org/10.1242/jeb.091520}} }  [25] M. R. Tonks, Y. Zhang, X. Bai, and P. C. Millett. Demonstrating the temperature gradient impact on grain growth in UO2 using the phase field method. Materials Research Letters, 2(1):23-28, 2014. http://dx.doi.org/10.1080/21663831.2013.849300. @article{Tonks_2014, author = {M.~R.~Tonks and Y.~Zhang and X.~Bai and P.~C.~Millett}, title = {{Demonstrating the temperature gradient impact on grain growth in UO$_2$ using the phase field method}}, journal = {Materials Research Letters}, year = 2014, volume = 2, number = 1, pages = {23--28}, note = {\url{http://dx.doi.org/10.1080/21663831.2013.849300}} }  [26] M. Teague, M. Tonks, S. Novascone, and S. Hayes. Microstructural modeling of thermal conductivity of high burn-up mixed oxide fuel. Journal of Nuclear Materials, 444(1-3):161-169, 2014. http://dx.doi.org/10.1016/j.jnucmat.2013.09.035. @article{Teague_2014, author = {M.~Teague and M.~Tonks and S.~Novascone and S.~Hayes}, title = {{Microstructural modeling of thermal conductivity of high burn-up mixed oxide fuel}}, journal = {Journal of Nuclear Materials}, year = 2014, volume = 444, number = {1--3}, pages = {161--169}, note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2013.09.035}} } 

## 2013

 [1] X. S. Ma, H. Gao, N. Qi, C. Berry, B. E. Griffith, and X. Y. Luo. Image-based immersed boundary/finite element model of the human mitral valve. In P. Nithiarasu, R. Löhner, and K. M. Liew, editors, Proceedings of the Third International Conference on Computational & Mathematical Biomedical Engineering (CMBE13), December 16-18, 2013. http://www.compbiomed.net/2013. @inproceedings{Ma_2013, author = {X.~S.~Ma and H.~Gao and N.~Qi and C.~Berry and B.~E.~Griffith and X.~Y.~Luo}, title = {{Image-based immersed boundary/finite element model of the human mitral valve}}, booktitle = {{Proceedings of the Third International Conference on Computational \& Mathematical Biomedical Engineering (CMBE13)}}, editor = {P.~Nithiarasu and R.~L\"{o}hner and K.~M.~Liew}, month = dec # {~16--18,}, year = {2013}, note = {\url{http://www.compbiomed.net/2013}} }  [2] V. Flamini, A. DeAnda, and B. E. Griffith. Simulating the effects of intersubject variability in aortic root compliance by the immersed boundary method. In P. Nithiarasu, R. Löhner, and K. M. Liew, editors, Proceedings of the Third International Conference on Computational & Mathematical Biomedical Engineering (CMBE13), December 16-18, 2013. http://www.compbiomed.net/2013. @inproceedings{Flamini_2013, author = {V.~Flamini and A.~DeAnda and B.~E.~Griffith}, title = {{Simulating the effects of intersubject variability in aortic root compliance by the immersed boundary method}}, booktitle = {{Proceedings of the Third International Conference on Computational \& Mathematical Biomedical Engineering (CMBE13)}}, editor = {P.~Nithiarasu and R.~L\"{o}hner and K.~M.~Liew}, month = dec # {~16--18,}, year = {2013}, note = {\url{http://www.compbiomed.net/2013}} }  [3] B. E. Griffith, V. Flamini, A. DeAnda, and L. Scotten. Simulating the dynamics of an aortic valve prosthesis in a pulse duplicator: Numerical methods and initial experience. Journal of Medical Devices, 7(4):040912, December 2013. http://dx.doi.org/10.1115/1.4025768. @article{Griffith_2013, author = {B.~E.~Griffith and V.~Flamini and A.~DeAnda and L.~Scotten}, title = {{Simulating the dynamics of an aortic valve prosthesis in a pulse duplicator: Numerical methods and initial experience}}, journal = {Journal of Medical Devices}, month = dec, year = 2013, volume = 7, number = 4, pages = {040912}, note = {\url{http://dx.doi.org/10.1115/1.4025768}} }  [4] P. Rong, O. von Estorff, L. Nagler, and M. Schanz. A finite element plate formulation for the acoustical investigation of thin air layers. J. Computational Acoustics, 21(4):1350014 (14 pages), December 2013. http://dx.doi.org/10.1142/S0218396X13500148. @article{Rong_2013, author = {P.~Rong and O.~von Estorff and L.~Nagler and M.~Schanz}, title = {{A finite element plate formulation for the acoustical investigation of thin air layers}}, journal = {J.~Computational Acoustics}, year = 2013, volume = 21, number = 4, month = dec, pages = {1350014 (14 pages)}, note = {\url{http://dx.doi.org/10.1142/S0218396X13500148}} }  [5] D. Fuentes, J. T. Oden, K. R. Diller, J. Yung, Y. Feng, J. D. Hazle, A. Shetty, and R. J. Stafford. Computational and MR-guided patient-specific laser induced thermal therapy of cancer. Technical Report 13-33, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, December 2013. https://www.ices.utexas.edu/media/reports/2013/1333.pdf. @techreport{Fuentes_2013b, author = {D.~Fuentes and J.~T.~Oden and K.~R.~Diller and J.~Yung and Y.~Feng and J.~D.~Hazle and A.~Shetty and R.~J.~Stafford}, title = {{Computational and MR-guided patient-specific laser induced thermal therapy of cancer}}, institution = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin}, year = 2013, month = dec, number = {13-33}, note = {\url{https://www.ices.utexas.edu/media/reports/2013/1333.pdf}} }  [6] A. L. Rossa and A. L. G. A. Coutinho. Parallel adaptive simulation of gravity currents on the lock-exchange problem. Computers & Fluids, 88:782-794, December 2013. http://dx.doi.org/10.1016/j.compfluid.2013.06.008. @article{Rossa_2013, author = {A.~L.~Rossa and A.~L.~G.~A.~Coutinho}, title = {{Parallel adaptive simulation of gravity currents on the lock-exchange problem}}, journal = {Computers \& Fluids}, year = 2013, month = dec, volume = 88, pages = {782--794}, note = {\url{http://dx.doi.org/10.1016/j.compfluid.2013.06.008}} }  [7] P. Rong, M. Abele, and O. von Estorff. Comparison of different methods for simulating acoustic diffuse field excitations. Acta Acustica united with Acustica, 99(6):931-939, December 2013. http://dx.doi.org/10.3813/AAA.918672. @article{Rong_2013b, author = {P.~Rong and M.~Abele and O.~von Estorff}, title = {{Comparison of different methods for simulating acoustic diffuse field excitations}}, journal = {Acta Acustica united with Acustica}, year = 2013, volume = 99, number = 6, month = dec, pages = {931--939}, note = {\url{http://dx.doi.org/10.3813/AAA.918672}} }  [8] L. Botti, K. Canneyt, R. Kaminsky, T. Claessens, R. N. Planken, P. Verdonck, A. Remuzzi, and L. Antiga. Numerical evaluation and experimental validation of pressure drops across a patient-specific model of vascular access for hemodialysis. Cardiovascular Engineering and Technology, 4(4):485-499, December 2013. http://dx.doi.org/10.1007/s13239-013-0162-6. @article{Botti_2013, author = {L.~Botti and K.~Canneyt and R.~Kaminsky and T.~Claessens and R.~N.~Planken and P.~Verdonck and A.~Remuzzi and L.~Antiga}, title = {{Numerical evaluation and experimental validation of pressure drops across a patient-specific model of vascular access for hemodialysis}}, journal = {Cardiovascular Engineering and Technology}, year = 2013, month = dec, volume = {4}, number = {4}, pages = {485--499}, note = {\url{http://dx.doi.org/10.1007/s13239-013-0162-6}} }  [9] V. Vavourakis, D. Loukidis, D. C. Charmpis, and P. Papanastasiou. A robust finite element approach for large deformation elastoplastic plane-strain problems. Finite Elements in Analysis and Design, 77:1-15, December 2013. http://dx.doi.org/10.1016/j.finel.2013.08.003. @article{Vavourakis_2013b, author = {V.~Vavourakis and D.~Loukidis and D.~C.~Charmpis and P.~Papanastasiou}, title = {{A robust finite element approach for large deformation elastoplastic plane-strain problems}}, journal = {Finite Elements in Analysis and Design}, year = 2013, volume = 77, month = dec, pages = {1--15}, note = {\url{http://dx.doi.org/10.1016/j.finel.2013.08.003}} }  [10] D. M. Perez, R. L. Williamson, S. R. Novascone, G. Pastore, J. D. Hales, and B. W. Spencer. Assessment of BISON: A nuclear fuel performance analysis code. Technical Report INL/MIS-13-30314, Idaho National Laboratory, November 2013. https://inlportal.inl.gov/portal/server.pt/gateway/PTARGS_0_2_140864_0_0_18/BISON_assessment_document_2013%2520copy.pdf. @techreport{Perez_2013b, author = {D.~M.~Perez and R.~L.~Williamson and S.~R.~Novascone and G.~Pastore and J.~D.~Hales and B.~W.~Spencer}, title = {{Assessment of BISON: A nuclear fuel performance analysis code}}, institution = {Idaho National Laboratory}, month = nov, year = {2013}, number = {INL/MIS-13-30314}, note = {\url{https://inlportal.inl.gov/portal/server.pt/gateway/PTARGS_0_2_140864_0_0_18/BISON_assessment_document_2013%2520copy.pdf}} }  [11] D. R. Gaston, J. W. Peterson, C. J. Permann, D. Andrs, A. E. Slaughter, and J. M. Miller. Continuous integration for concurrent computational framework and application development. In First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE), In Conjunction with SC13, Denver, CO, November 2013. http://dx.doi.org/10.6084/m9.figshare.790755. @inproceedings{Gaston_2013b, author = {D.~R.~Gaston and J.~W.~Peterson and C.~J.~Permann and D.~Andrs and A.~E.~Slaughter and J.~M.~Miller}, title = {{Continuous integration for concurrent computational framework and application development}}, booktitle = {{First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE), In Conjunction with SC13, Denver, CO}}, month = nov, year = {2013}, note = {\url{http://dx.doi.org/10.6084/m9.figshare.790755}} }  [12] R. P. Widmer Soyka, A. López, C. Persson, L. Cristofolini, and S. J. Ferguson. Numerical description and experimental validation of a rheology model for non-Newtonian fluid flow in cancellous bone. Journal of the Mechanical Behavior of Biomedical Materials, 27:43-53, November 2013. http://dx.doi.org/10.1016/j.jmbbm.2013.06.007. @article{Widmer_2013b, author = {R.~P.~Widmer Soyka and A.~L\'{o}pez and C.~Persson and L.~Cristofolini and S.~J.~Ferguson}, title = {{Numerical description and experimental validation of a rheology model for non-Newtonian fluid flow in cancellous bone}}, journal = {Journal of the Mechanical Behavior of Biomedical Materials}, year = 2013, volume = 27, month = nov, pages = {43--53}, note = {\url{http://dx.doi.org/10.1016/j.jmbbm.2013.06.007}} }  [13] J. D. Hales, R. L. Williamson, S. R. Novascone, D. M. Perez, B. W. Spencer, and G. Pastore. Multidimensional multiphysics simulation of TRISO particle fuel. Journal of Nuclear Materials, 443(1-3):531-543, November 2013. http://dx.doi.org/10.1016/j.jnucmat.2013.07.070. @article{Hales_2013b, author = {J.~D.~Hales and R.~L.~Williamson and S.~R.~Novascone and D.~M.~Perez and B.~W.~Spencer and G.~Pastore}, title = {{Multidimensional multiphysics simulation of TRISO particle fuel}}, journal = {Journal of Nuclear Materials}, year = 2013, volume = 443, number = {1--3}, month = nov, pages = {531--543}, note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2013.07.070}} }  [14] A. Günther, H. Lamecker, and M. Weiser. Flexible shape matching with finite element based LDDMM. International Journal of Computer Vision, 105(2):128-143, November 2013. http://dx.doi.org/10.1007/s11263-012-0599-3. @article{Gunther_2013, author = {A.~G\"{u}nther and H.~Lamecker and M.~Weiser}, title = {{Flexible shape matching with finite element based LDDMM}}, journal = {International Journal of Computer Vision}, volume = 105, number = 2, pages = {128--143}, month = nov, year = 2013, note = {\url{http://dx.doi.org/10.1007/s11263-012-0599-3}} }  [15] J. D. Hales, S. R. Novascone, G. Pastore, D. M. Perez, B. W. Spencer, and R. L. Williamson. BISON Theory Manual: The Equations Behind Nuclear Fuel Analysis. Technical Report INL/EXT-13-29930, Idaho National Laboratory, October 2013. http://www.inl.gov/technicalpublications/Documents/5842314.pdf. @techreport{Hales_2013c, author = {J.~D.~Hales and S.~R.~Novascone and G.~Pastore and D.~M.~Perez and B.~W.~Spencer and R.~L.~Williamson}, title = {{BISON Theory Manual: The Equations Behind Nuclear Fuel Analysis}}, institution = {Idaho National Laboratory}, month = oct, year = {2013}, number = {INL/EXT-13-29930}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5842314.pdf}} }  [16] Y. Li, S. Hu, and X. Sun. Report on the Implementation of the Homogeneous Nucleation Scheme in MARMOT-based Phase Field Simulations. Technical Report PNNL-22829, Pacific Northwest National Laboratory, September 2013. http://www.pnnl.gov/main/publications/external/technical_reports/PNNL-22829.pdf. @techreport{Li_2013, author = {Y.~Li and S.~Hu and X.~Sun}, title = {{Report on the Implementation of the Homogeneous Nucleation Scheme in MARMOT-based Phase Field Simulations}}, institution = {Pacific Northwest National Laboratory}, month = sep, year = {2013}, number = {PNNL-22829}, note = {\url{http://www.pnnl.gov/main/publications/external/technical_reports/PNNL-22829.pdf}} }  [17] L. P. Swiler, D. Mandelli, C. Rabiti, and A. Alfonsi. DAKOTA Reliability Methods applied to RAVEN/RELAP-7. Technical Report SAND2013-8439, Sandia National Laboratory, September 2013. http://prod.sandia.gov/techlib/access-control.cgi/2013/138439.pdf. @techreport{Swiler_2013c, author = {L.~P.~Swiler and D.~Mandelli and C.~Rabiti and A.~Alfonsi}, title = {{DAKOTA Reliability Methods applied to RAVEN/RELAP-7}}, institution = {Sandia National Laboratory}, month = sep, year = {2013}, number = {SAND2013-8439}, note = {\url{http://prod.sandia.gov/techlib/access-control.cgi/2013/138439.pdf}} }  [18] P. Medvedev. Summary Report on the Fuel Performance Modeling of the AFC-2A, 2B Irradiation Experiments. Technical Report INL/EXT-13-30006, Idaho National Laboratory, September 2013. http://www.inl.gov/technicalpublications/Documents/5864449.pdf. @techreport{Medvedev_2013, author = {P.~Medvedev}, title = {{Summary Report on the Fuel Performance Modeling of the AFC-2A, 2B Irradiation Experiments}}, institution = {Idaho National Laboratory}, month = sep, year = {2013}, number = {INL/EXT-13-30006}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5864449.pdf}} }  [19] R. Hu, J. W. Thomas, E. Munkhzul, T. H. Fanning, H. Zhang, and R. Martineau. Development of SFR Primary System Simulation Capability for Advanced System Codes. Technical Report ANL/NE-13/11, Argonne National Laboratory, September 2013. http://www.ipd.anl.gov/anlpubs/2014/01/77535.pdf, http://dx.doi.org/10.2172/1121040. @techreport{Hu_2013b, author = {R.~Hu and J.~W.~Thomas and E.~Munkhzul and T.~H.~Fanning and H.~Zhang and R.~Martineau}, title = {{Development of SFR Primary System Simulation Capability for Advanced System Codes}}, institution = {Argonne National Laboratory}, day = {30}, month = sep, year = {2013}, number = {ANL/NE-13/11}, note = {\url{http://www.ipd.anl.gov/anlpubs/2014/01/77535.pdf}, \url{http://dx.doi.org/10.2172/1121040}} }  [20] S. R. Novascone, B. W. Spencer, and J. D. Hales. Light Water Reactor Sustainability Program: Status Report on the Grizzly Code Enhancements. Technical Report INL/EXT-13-30315, Idaho National Laboratory, September 2013. http://www.inl.gov/technicalpublications/Documents/5872011.pdf. @techreport{Novascone_2013b, author = {S.~R.~Novascone and B.~W.~Spencer and J.~D.~Hales}, title = {{Light Water Reactor Sustainability Program: Status Report on the Grizzly Code Enhancements}}, institution = {Idaho National Laboratory}, month = sep, year = {2013}, number = {INL/EXT-13-30315}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5872011.pdf}} }  [21] J. D. Hales, M. R. Tonks, K. Chockalingam, D. M. Perez, S. R. Novascone, B. W. Spencer, and R. L. Williamson. Multiscale Nuclear Fuel Analysis via Asymptotic Expansion Homogenization. Technical Report INL/CON-12-27165, Idaho National Laboratory, August 2013. http://www.inl.gov/technicalpublications/Documents/5842301.pdf, also appeared in: Transactions, SMiRT-22, San Francisco, CA, USA, August 18-23, 2013, Division III. @techreport{Hales_2013d, author = {J.~D.~Hales and M.~R.~Tonks and K.~Chockalingam and D.~M.~Perez and S.~R.~Novascone and B.~W.~Spencer and R.~L.~Williamson}, title = {{Multiscale Nuclear Fuel Analysis via Asymptotic Expansion Homogenization}}, institution = {Idaho National Laboratory}, month = aug, year = {2013}, number = {INL/CON-12-27165}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5842301.pdf}, also appeared in: Transactions, SMiRT-22, San Francisco, CA, USA, August 18-23, 2013, Division III} }  [22] S. R. Novascone, B. W. Spencer, R. L. Williamson, D. Andrs, J. D. Hales, and D. M. Perez. A comparison of thermomechanics coupling strategies in fuel pin and pressure vessel simulations. Technical Report INL/CON-12-27510, Idaho National Laboratory, August 2013. http://www.inl.gov/technicalpublications/Documents/5842302.pdf, also appeared in: Transactions, SMiRT-22, San Francisco, CA, USA, August 18-23, 2013, Division III. @techreport{Novascone_2013c, author = {S.~R.~Novascone and B.~W.~Spencer and R.~L.~Williamson and D.~Andrs and J.~D.~Hales and D.~M.~Perez}, title = {{A comparison of thermomechanics coupling strategies in fuel pin and pressure vessel simulations}}, institution = {Idaho National Laboratory}, month = aug, year = {2013}, number = {INL/CON-12-27510}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5842302.pdf}, also appeared in: Transactions, SMiRT-22, San Francisco, CA, USA, August 18-23, 2013, Division III} }  [23] J. A. Fike. Construction of reduced order models for the non-linear Navier-Stokes equations using the Proper Orthogonal Decomposition (POD)/Galerkin method. Technical Report SAND2013-7051, Sandia National Laboratories, August 2013. http://prod.sandia.gov/techlib/access-control.cgi/2013/137051.pdf. @techreport{Fike_2013, author = {J.~A.~Fike}, title = {{Construction of reduced order models for the non-linear Navier-Stokes equations using the Proper Orthogonal Decomposition (POD)/Galerkin method}}, institution = {Sandia National Laboratories}, month = aug, year = {2013}, number = {SAND2013-7051}, note = {\url{http://prod.sandia.gov/techlib/access-control.cgi/2013/137051.pdf}} }  [24] N. N. Carlson, C. Unal, and J. D. Galloway. Formulation of the constituent distribution model implemented into the BISON framework for the analysis of performance of metallic fuels with some initial simulations results. Technical Report LA-UR-13-26824, Los Alamos National Laboratory, August 2013. http://dx.doi.org/10.2172/1091811. @techreport{Carlson_2013, author = {N.~N.~Carlson and C.~Unal and J.~D.~Galloway}, title = {{Formulation of the constituent distribution model implemented into the BISON framework for the analysis of performance of metallic fuels with some initial simulations results}}, institution = {Los Alamos National Laboratory}, day = 30, month = aug, year = {2013}, number = {LA-UR-13-26824}, note = {\url{http://dx.doi.org/10.2172/1091811}} }  [25] A. M. Tahir, G. Amberg, and M. Do-Quang. Initial rapid wetting in metallic systems. Acta Materialia, 61(14):5375-5386, August 2013. http://dx.doi.org/10.1016/j.actamat.2013.05.026. @article{Tahir_2013, author = {A.~M.~Tahir and G.~Amberg and M.~Do-Quang}, title = {{Initial rapid wetting in metallic systems}}, journal = {Acta Materialia}, month = aug, year = 2013, volume = 61, number = 14, pages = {5375--5386}, note = {\url{http://dx.doi.org/10.1016/j.actamat.2013.05.026}} }  [26] P. C. Millett, M. R. Tonks, K. Chockalingam, Y. Zhang, and S. B. Biner. Three dimensional calculations of the effective Kapitza resistance of UO2 grain boundaries containing intergranular bubbles. Journal of Nuclear Materials, 439(1-3):117-122, August 2013. http://dx.doi.org/10.1016/j.jnucmat.2013.02.039. @article{Millett_2013, author = {P.~C.~Millett and M.~R.~Tonks and K.~Chockalingam and Y.~Zhang and S.~B.~Biner}, title = {{Three dimensional calculations of the effective Kapitza resistance of UO$_2$ grain boundaries containing intergranular bubbles}}, journal = {Journal of Nuclear Materials}, year = 2013, volume = 439, number = {1--3}, month = aug, pages = {117--122}, note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2013.02.039}} }  [27] J. M. Gimenez and N. M. Nigro. Towards massively parallel simulations with PFEM-2. In C. Garcia Garino and M. Printista, editors, Proceedings of VI Latin American Symposium on High Performance Computing (HPCLatAm 2013), pages 145-157, July 29-30, 2013. http://hpc2013.hpclatam.org/papers/HPCLatAm2013-paper-15.pdf. @inproceedings{Gimenez_2013, author = {J.~M.~Gimenez and N.~M.~Nigro}, title = {{Towards massively parallel simulations with PFEM-2}}, booktitle = {{Proceedings of VI Latin American Symposium on High Performance Computing (HPCLatAm 2013)}}, editor = {C.~Garcia Garino and M.~Printista}, pages = {145--157}, publisher = {}, month = jul # {~29--30,}, year = {2013}, note = {\url{http://hpc2013.hpclatam.org/papers/HPCLatAm2013-paper-15.pdf}} }  [28] B. S. Kirk, R. H. Stogner, T. A. Oliver, and P. T. Bauman. Recent advancements in fully-implicit numerical methods for hypersonic reacting flows. In 21st AIAA Computational Fluid Dynamics Conference, June 24-27, 2013. http://dx.doi.org/10.2514/6.2013-2559. @inproceedings{Kirk_2013b, author = {B.~S.~Kirk and R.~H.~Stogner and T.~A.~Oliver and P.~T.~Bauman}, title = {{Recent advancements in fully-implicit numerical methods for hypersonic reacting flows}}, booktitle = {{21st AIAA Computational Fluid Dynamics Conference}}, month = jun # {~24--27,}, year = {2013}, note = {\url{http://dx.doi.org/10.2514/6.2013-2559}} }  [29] A. Corsini, F. Rispoli, A. G. Sheard, and P. Venturini. Numerical simulation of coal fly-ash erosion in an induced draft fan. Journal of Fluids Engineering, 135(8):081303 (12 pages), June 2013. http://dx.doi.org/10.1115/1.4024127. @article{Corsini_2013, author = {A.~Corsini and F.~Rispoli and A.~G.~Sheard and P.~Venturini}, title = {{Numerical simulation of coal fly-ash erosion in an induced draft fan}}, journal = {Journal of Fluids Engineering}, year = 2013, month = jun, volume = 135, number = 8, pages = {081303 (12 pages)}, note = {\url{http://dx.doi.org/10.1115/1.4024127}} }  [30] T. L. Dickson, P. T. Williams, S. Yin, H. B. Klasky, S. K. Tadinada, and B. R. Bass. Grizzly/FAVOR Interface Project Report. Technical Report ORNL/TM-2013/44094, Oak Ridge National Laboratory, June 2013. https://inlportal.inl.gov/portal/server.pt/gateway/PTARGS_0_4791_129412_0_0_18/GRIZZLY-FAVOR_InterfaceProjectReport_ORN_TM_2013_44094.pdf. @techreport{Dickson_2013, author = {T.~L.~Dickson and P.~T.~Williams and S.~Yin and H.~B.~Klasky and S.~K.~Tadinada and B.~R.~Bass}, title = {{Grizzly/FAVOR Interface Project Report}}, institution = {Oak Ridge National Laboratory}, month = jun, year = {2013}, number = {ORNL/TM-2013/44094}, note = {\url{https://inlportal.inl.gov/portal/server.pt/gateway/PTARGS_0_4791_129412_0_0_18/GRIZZLY-FAVOR_InterfaceProjectReport_ORN_TM_2013_44094.pdf}} }  [31] S. J. Fahrenholtz, R. J. Stafford, F. Maier, J. D. Hazle, and D. Fuentes. Generalised polynomial chaos-based uncertainty quantification for planning MRgLITT procedures. International Journal of Hyperthermia, (4):324-335, June 2013. http://dx.doi.org/10.3109/02656736.2013.798036. @article{Fahrenholtz_2013, author = {S.~J.~Fahrenholtz and R.~J.~Stafford and F.~Maier and J.~D.~Hazle and D.~Fuentes}, title = {{Generalised polynomial chaos-based uncertainty quantification for planning MRgLITT procedures}}, journal = {International Journal of Hyperthermia}, month = jun, year = 2013, vol = 29, number = 4, pages = {324--335}, note = {\url{http://dx.doi.org/10.3109/02656736.2013.798036}} }  [32] J. T. Oden, E. E. Prudencio, and A. Hawkins-Daarud. Selection and assessment of phenomenological models of tumor growth. Mathematical Models and Methods in Applied Sciences, 23(7):1309-1338, June 2013. http://dx.doi.org/10.1142/S0218202513500103. @article{Oden_2013, author = {J.~T.~Oden and E.~E.~Prudencio and A.~Hawkins-Daarud}, title = {{Selection and assessment of phenomenological models of tumor growth}}, journal = {Mathematical Models and Methods in Applied Sciences}, year = 2013, volume = 23, number = 7, month = jun, pages = {1309--1338}, note = {\url{http://dx.doi.org/10.1142/S0218202513500103}} }  [33] M. O. Delchini, J. C. Ragusa, and R. A. Berry. Entropy viscosity method applied to Euler equations. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{Delchini_2013, author = {M.~O.~Delchini and J.~C.~Ragusa and R.~A.~Berry}, title = {{Entropy viscosity method applied to Euler equations}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [34] A. Alfonsi, C. Rabiti, D. Mandelli, J. J. Cogliati, and R. A. Kinoshita. RAVEN as a tool for dynamic probabilistic risk assessment: software overview. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{Alfonsi_2013, author = {A.~Alfonsi and C.~Rabiti and D.~Mandelli and J.~J.~Cogliati and R.~A.~Kinoshita}, title = {{RAVEN as a tool for dynamic probabilistic risk assessment: software overview}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [35] C. Rabiti, D. Mandelli, A. Alfonsi, J. J. Cogliati, and R. A. Kinoshita. Mathematical framework for the analysis of dynamic stochastic systems with the RAVEN code. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{Rabiti_2013, author = {C.~Rabiti and D.~Mandelli and A.~Alfonsi and J.~J.~Cogliati and R.~A.~Kinoshita}, title = {{Mathematical framework for the analysis of dynamic stochastic systems with the RAVEN code}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [36] Y. Wang. Nonlinear diffusion acceleration for the multigroup transport equation discretized with SN and continuous FEM with RattleSNake. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. http://www.inl.gov/technicalpublications/Documents/5723137.pdf. @inproceedings{Wang_2013, author = {Y.~Wang}, title = {{Nonlinear diffusion acceleration for the multigroup transport equation discretized with $S_N$ and continuous FEM with Rattle$S_N$ake}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5723137.pdf}} }  [37] M. Johnson and H. Zhao. Extended forward sensitivity analysis of one-dimensional isothermal flow. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. http://www.inl.gov/technicalpublications/Documents/5723135.pdf. @inproceedings{Johnson_2013, author = {M.~Johnson and H.~Zhao}, title = {{Extended forward sensitivity analysis of one-dimensional isothermal flow}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5723135.pdf}} }  [38] F. N. Gleicher, B. W. Spencer, S. R. Novascone, R. L. Williamson, R. C. Martineau, M. Rose, T. J. Downar, and B. Collins. Coupling the core analysis program DeCART to the fuel performance application BISON. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{Gleicher_2013, author = {F.~N.~Gleicher and B.~W.~Spencer and S.~R.~Novascone and R.~L.~Williamson and R.~C.~Martineau and M.~Rose and T.~J.~Downar and B.~Collins}, title = {{Coupling the core analysis program DeCART to the fuel performance application BISON}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [39] H. Zhang, L. Zou, D. Andrs, H. Zhao, and R. C. Martineau. Point kinetics calculations with fully coupled thermal fluids reactivity feedback. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{HZhang_2013, author = {H.~Zhang and L.~Zou and D.~Andrs and H.~Zhao and R.~C.~Martineau}, title = {{Point kinetics calculations with fully coupled thermal fluids reactivity feedback}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [40] M. R. Tonks, S. B. Biner, P. C. Millett, and D. A. Andersson. Comparison between phase field simulations and experimental data from intragranular bubble growth in UO2. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{Tonks_2013, author = {M.~R.~Tonks and S.~B.~Biner and P.~C.~Millett and D.~A.~Andersson}, title = {{Comparison between phase field simulations and experimental data from intragranular bubble growth in UO$_2$}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [41] L. Zou, J. W. Peterson, H. Zhao, H. Zhang, D. Andrs, and R. C. Martineau. Solving implicit multi-mesh flow and conjugate heat transfer problems with RELAP-7. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. http://www.inl.gov/technicalpublications/Documents/5723136.pdf. @inproceedings{Zou_2013, author = {L.~Zou and J.~W.~Peterson and H.~Zhao and H.~Zhang and D.~Andrs and R.~C.~Martineau}, title = {{Solving implicit multi-mesh flow and conjugate heat transfer problems with RELAP-7}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5723136.pdf}} }  [42] S. R. Novascone, B. W. Spencer, D. Andrs, R. L. Williamson, J. D. Hales, and D. M. Perez. Results from tight and loose coupled multiphysics in nuclear fuels. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{Novascone_2013, author = {S.~R.~Novascone and B.~W.~Spencer and D.~Andrs and R.~L.~Williamson and J.~D.~Hales and D.~M.~Perez}, title = {{Results from tight and loose coupled multiphysics in nuclear fuels}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [43] D. M. Perez, R. L. Williamson, S. R. Novascone, T. K. Larson, J. D. Hales, B. W. Spencer, and G. Pastore. An evaluation of the nuclear fuel performance code BISON. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{Perez_2013, author = {D.~M.~Perez and R.~L.~Williamson and S.~R.~Novascone and T.~K.~Larson and J.~D.~Hales and B.~W.~Spencer and G.~Pastore}, title = {{An evaluation of the nuclear fuel performance code BISON}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [44] J. D. Hales, D. R. Gaston, and D. Andrs. Algorithms for thermal and mechanical contact in nuclear fuel performance analysis. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{Hales_2013, author = {J.~D.~Hales and D.~R.~Gaston and D.~Andrs}, title = {{Algorithms for thermal and mechanical contact in nuclear fuel performance analysis}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [45] D. R. Gaston, C. J. Permann, D. Andrs, and J. W. Peterson. Massive hybrid parallelism for fully implicit multiphysics. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. @inproceedings{Gaston_2013, author = {D.~R.~Gaston and C.~J.~Permann and D.~Andrs and J.~W.~Peterson}, title = {{Massive hybrid parallelism for fully implicit multiphysics}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013} }  [46] L. P. Swiler, R. L. Williamson, and D. M. Perez. Calibration of a fuel relocation model in BISON. In Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering (M&C 2013), May 5-9, 2013. https://cfwebprod.sandia.gov/cfdocs/CCIM/docs/mc13_swiler.pdf. @inproceedings{Swiler_2013, author = {L.~P.~Swiler and R.~L.~Williamson and D.~M.~Perez}, title = {{Calibration of a fuel relocation model in BISON}}, booktitle = {{Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science \& Engineering (M\&C 2013)}}, month = may # {~5--9,}, year = {2013}, note = {\url{https://cfwebprod.sandia.gov/cfdocs/CCIM/docs/mc13_swiler.pdf}} }  [47] M. J. Grote, J. Huber, D. Kourounis, and O. Schenk. Inexact interior-point method for PDE-constrained nonlinear optimization. Technical Report 2013-15, Institute of Mathematics, University of Basel, Preprint No. 2013-15, May 2013. http://math.unibas.ch/fileadmin/mathe/redaktion/Preprints/13_alle/Preprint_1315.pdf. @techreport{Grote_2013, author = {M.~J.~Grote and J.~Huber and D.~Kourounis and O.~Schenk}, title = {{Inexact interior-point method for PDE-constrained nonlinear optimization}}, institution = {Institute of Mathematics, University of Basel, Preprint No. 2013-15}, month = may, year = {2013}, number = {2013-15}, note = {\url{http://math.unibas.ch/fileadmin/mathe/redaktion/Preprints/13_alle/Preprint_1315.pdf}} }  [48] M. R. Tonks, S. B. Biner, P. C. Millett, and D. A. Andersson. Comparison between phase field simulations and experimental data from intragranular bubble growth in UO2. Technical Report INL/CON-13-28301, Idaho National Laboratory, May 2013. http://www.inl.gov/technicalpublications/Documents/5723142.pdf. @techreport{Tonks_2013c, author = {M.~R.~Tonks and S.~B.~Biner and P.~C.~Millett and D.~A.~Andersson}, title = {{Comparison between phase field simulations and experimental data from intragranular bubble growth in UO$_2$}}, institution = {Idaho National Laboratory}, month = may, year = {2013}, number = {INL/CON-13-28301}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5723142.pdf}} }  [49] L. P. Swiler, G. Pastore, R. L. Williamson, and D. M. Perez. Sensitivity analysis of the fission gas behavior model in BISON. Technical Report SAND2013-3906, Sandia National Laboratories, May 2013. http://prod.sandia.gov/techlib/access-control.cgi/2013/133906.pdf. @techreport{Swiler_2013b, author = {L.~P.~Swiler and G.~Pastore and R.~L.~Williamson and D.~M.~Perez}, title = {{Sensitivity analysis of the fission gas behavior model in BISON}}, institution = {Sandia National Laboratories}, month = may, year = {2013}, number = {SAND2013-3906}, note = {\url{http://prod.sandia.gov/techlib/access-control.cgi/2013/133906.pdf}} }  [50] M. Bittl and D. Kuzmin. An hp-adaptive flux-corrected transport algorithm for continuous finite elements. Computing, 95(1, Supplement):27-48, May 2013. http://dx.doi.org/10.1007/s00607-012-0223-y. @article{Bittl_2012, author = {M.~Bittl and D.~Kuzmin}, title = {{An $hp$-adaptive flux-corrected transport algorithm for continuous finite elements}}, journal = {Computing}, year = 2013, month = may, volume = 95, number = {1, Supplement}, pages = {27--48}, note = {\url{http://dx.doi.org/10.1007/s00607-012-0223-y}} }  [51] K. Chockalingam, M. R. Tonks, J. D. Hales, D. R. Gaston, P. C. Millett, and L. Zhang. Crystal plasticity with Jacobian-Free Newton-Krylov. Computational Mechanics, 51(5):617-627, May 2013. http://dx.doi.org/10.1007/s00466-012-0741-7. @article{Chockalingam_2013, author = {K.~Chockalingam and M.~R.~Tonks and J.~D.~Hales and D.~R.~Gaston and P.~C.~Millett and L.~Zhang}, title = {{Crystal plasticity with Jacobian-Free Newton-Krylov}}, journal = {Computational Mechanics}, year = 2013, volume = 51, number = 5, month = may, pages = {617--627}, note = {\url{http://dx.doi.org/10.1007/s00466-012-0741-7}} }  [52] K. Lee and K. Willcox. Structural integrity assessment via structural response predictions using a certified reduced basis model. In 54th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference, April 8-11, 2013. http://dx.doi.org/10.2514/6.2013-1625. @inproceedings{Lee_2013, author = {K.~Lee and K.~Willcox}, title = {{Structural integrity assessment via structural response predictions using a certified reduced basis model}}, booktitle = {{54th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference}}, month = apr # {~8--11,}, year = {2013}, note = {\url{http://dx.doi.org/10.2514/6.2013-1625}} }  [53] M. Bhatia and P. Beran. h-adaptive stabilized finite-element solver for calculation of generalized aerodynamic forces. In 54th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference, April 8-11, 2013. http://dx.doi.org/10.2514/6.2013-1456. @inproceedings{Bhatia_2013, author = {M.~Bhatia and P.~Beran}, title = {{$h$-adaptive stabilized finite-element solver for calculation of generalized aerodynamic forces}}, booktitle = {{54th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference}}, month = apr # {~8--11,}, year = {2013}, note = {\url{http://dx.doi.org/10.2514/6.2013-1456}} }  [54] T. M. van Opstal, P. T. Bauman, S. Prudhomme, and E. H. Brummelen. Goal-oriented model adaptivity for viscous incompressible flows. Technical Report 13-07, The Institute for Computational Engineering and Sciences (ICES), April 2013. https://www.ices.utexas.edu/media/reports/2013/1307.pdf. @techreport{Opstal_2013, author = {T.~M.~van Opstal and P.~T.~Bauman and S.~Prudhomme and E.~H.~Brummelen}, title = {{Goal-oriented model adaptivity for viscous incompressible flows}}, institution = {The Institute for Computational Engineering and Sciences (ICES)}, day = {8}, month = apr, year = {2013}, number = {13-07}, note = {\url{https://www.ices.utexas.edu/media/reports/2013/1307.pdf}} }  [55] R. Hu, J. W. Thomas, and T. H. Fanning. Strategy for multi-scale single-phase flow coupling. Technical Report ANL/NE-13/4, Argonne National Laboratory, March 2013. http://www.ipd.anl.gov/anlpubs/2013/05/76182.pdf. @techreport{Hu_2013, author = {R.~Hu and J.~W.~Thomas and T.~H.~Fanning}, title = {{Strategy for multi-scale single-phase flow coupling}}, institution = {Argonne National Laboratory}, day = {31}, month = mar, year = {2013}, number = {ANL/NE-13/4}, note = {\url{http://www.ipd.anl.gov/anlpubs/2013/05/76182.pdf}} }  [56] L. Guo, H. Huang, D. R. Gaston, C. J. Permann, D. Andrs, G. D. Redden, C. Lu, D. T. Fox, and Y. Fujita. A parallel, fully coupled, fully implicit solution to reactive transport in porous media using the preconditioned Jacobian-Free Newton-Krylov Method. Advances in Water Resources, 53:101-108, March 2013. http://dx.doi.org/10.1016/j.advwatres.2012.10.010. @article{Guo_2013, author = {L.~Guo and H.~Huang and D.~R.~Gaston and C.~J.~Permann and D.~Andrs and G.~D.~Redden and C.~Lu and D.~T.~Fox and Y.~Fujita}, title = {{A parallel, fully coupled, fully implicit solution to reactive transport in porous media using the preconditioned Jacobian-Free Newton-Krylov Method}}, journal = {Advances in Water Resources}, year = 2013, month = mar, volume = 53, pages = {101--108}, note = {\url{http://dx.doi.org/10.1016/j.advwatres.2012.10.010}} }  [57] L. Zhang, M. R. Tonks, D. Gaston, J. W. Peterson, D. Andrs, P. C. Millett, and B. S. Biner. A quantitative comparison between C0 and C1 elements for solving the Cahn-Hilliard equation. Journal of Computational Physics, 236:74-80, March 2013. http://dx.doi.org/10.1016/j.jcp.2012.12.001. @article{Zhang_2013, author = {L.~Zhang and M.~R.~Tonks and D.~Gaston and J.~W.~Peterson and D.~Andrs and P.~C.~Millett and B.~S.~Biner}, title = {{A quantitative comparison between $C^0$ and $C^1$ elements for solving the Cahn-Hilliard equation}}, journal = {Journal of Computational Physics}, month = mar, year = 2013, volume = 236, pages = {74--80}, note = {\url{http://dx.doi.org/10.1016/j.jcp.2012.12.001}} }  [58] A. Satou, V. Ryzhii, F. T. Vasko, V. V. Mitin, and T. Otsuji. Numerical simulation of terahertz plasmons in gated graphene structures. In L. P. Sadwick and C. M. O'Sullivan, editors, Terahertz, RF, Millimeter, and Submillimeter-Wave Technology and Applications VI, Vol. 8624. International Society for Optics and Photonics (SPIE), February 20, 2013. http://dx.doi.org/10.1117/12.2003611. @inproceedings{Satou_2013, author = {A.~Satou and V.~Ryzhii and F.~T.~Vasko and V.~V.~Mitin and T.~Otsuji}, title = {{Numerical simulation of terahertz plasmons in gated graphene structures}}, booktitle = {{Terahertz, RF, Millimeter, and Submillimeter-Wave Technology and Applications VI, Vol.~8624}}, editor = {L.~P.~Sadwick and C.~M.~O'Sullivan}, publisher = {International Society for Optics and Photonics (SPIE)}, month = feb # {~20,}, year = {2013}, note = {\url{http://dx.doi.org/10.1117/12.2003611}} }  [59] B. S. Kirk and T. A. Oliver. Validation of SUPG finite element simulations of shockwave/turbulent boundary layer interactions in hypersonic flows. In 51st AIAA Aerospace Sciences Meeting, January 7-10, 2013. http://dx.doi.org/10.2514/6.2013-306. @inproceedings{Kirk_2013, author = {B.~S.~Kirk and T.~A.~Oliver}, title = {{Validation of SUPG finite element simulations of shockwave/turbulent boundary layer interactions in hypersonic flows}}, booktitle = {{51st AIAA Aerospace Sciences Meeting}}, month = jan # {~7--10,}, year = {2013}, note = {\url{http://dx.doi.org/10.2514/6.2013-306}} }  [60] A.-M. Toader and C. Barbarosie. Optimization of bodies with locally periodic microstructure by varying the periodicity pattern. In Centro de Matemática e Aplicações Fundamentais (CMAF) Preprint Pre-010, 2013. http://ptmat.fc.ul.pt/arquivo/docs/preprints/pdf/2013/preprint_010.pdf. @inproceedings{Toader_2013, author = {A.-M.~Toader and C.~Barbarosie}, title = {{Optimization of bodies with locally periodic microstructure by varying the periodicity pattern}}, booktitle = {{Centro de Matem\'{a}tica e Aplica\c{c}\~{o}es Fundamentais (CMAF) Preprint Pre-010}}, year = {2013}, note = {\url{http://ptmat.fc.ul.pt/arquivo/docs/preprints/pdf/2013/preprint_010.pdf}} }  [61] Michael R. Tonks, Yongfeng Zhang, S.B. Biner, Paul C. Millett, and Xianming Bai. Guidance to design grain boundary mobility experiments with molecular dynamics and phase-field modeling. Acta Materialia, 61(4):1373-1382, 2013. http://dx.doi.org/10.1016/j.actamat.2012.11.014. @article{Tonks_2013d, author = {Michael R. Tonks and Yongfeng Zhang and S.B. Biner and Paul C. Millett and Xianming Bai}, title = {{Guidance to design grain boundary mobility experiments with molecular dynamics and phase-field modeling}}, journal = {Acta Materialia}, year = 2013, volume = 61, number = 4, pages = {1373--1382}, note = {\url{http://dx.doi.org/10.1016/j.actamat.2012.11.014}} }  [62] M. R. Tonks, P. C. Millett, P. Nerikar, S. Du, D. Andersson, C. R. Stanek, D. Gaston, D. Andrs, and R. Williamson. Multiscale development of a fission gas thermal conductivity model: Coupling atomic, meso and continuum level simulations. Journal of Nuclear Materials, 440(1-3):193-200, 2013. http://dx.doi.org/10.1016/j.jnucmat.2013.05.008. @article{Tonks_2013b, author = {M.~R.~Tonks and P.~C.~Millett and P.~Nerikar and S.~Du and D.~Andersson and C.~R.~Stanek and D.~Gaston and D.~Andrs and R.~Williamson}, title = {{Multiscale development of a fission gas thermal conductivity model: Coupling atomic, meso and continuum level simulations}}, journal = {Journal of Nuclear Materials}, year = 2013, volume = 440, number = {1--3}, pages = {193--200}, note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2013.05.008}} }  [63] A. Corsini and A. G. Sheard. End-plate for noise-by-flow control in axial fans. Periodica Polytechnica Mechanical Engineering, 57(2):3-16, 2013. http://dx.doi.org/10.3311/PPme.7039. @article{Corsini_2013b, author = {A.~Corsini and A.~G.~Sheard}, title = {{End-plate for noise-by-flow control in axial fans}}, journal = {Periodica Polytechnica Mechanical Engineering}, year = 2013, volume = 57, number = 2, pages = {3--16}, note = {\url{http://dx.doi.org/10.3311/PPme.7039}} }  [64] D. Król, D. Zydek, and H. Selvaraj. Matrix multiplication in multiphysics systems using CUDA. In Advances in Systems Science, volume 240, pages 493-502. Springer International Publishing, 2013. http://dx.doi.org/10.1007/978-3-319-01857-7_48. @incollection{Krol_2013, author = {D.~Kr\'{o}l and D.~Zydek and H.~Selvaraj}, title = {{Matrix multiplication in multiphysics systems using CUDA}}, pages = {493--502}, year = 2013, publisher = {Springer International Publishing}, booktitle = {Advances in Systems Science}, volume = {240}, note = {\url{http://dx.doi.org/10.1007/978-3-319-01857-7_48}} }  [65] V. J. Rutledge. OSPREY Model. Technical Report INL/EXT-13-28150, Idaho National Laboratory, January 2013. http://www.inl.gov/technicalpublications/Documents/5588158.pdf. @techreport{Rutledge_2013, author = {V.~J.~Rutledge}, title = {{OSPREY Model}}, institution = {Idaho National Laboratory}, month = jan, year = {2013}, number = {INL/EXT-13-28150}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5588158.pdf}} }  [66] R. P. Widmer and S. J. Ferguson. A comparison and verification of computational methods to determine the permeability of vertebral trabecular bone. Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine, 227(6):617-628, 2013. http://dx.doi.org/10.1177/0954411912462814. @article{Widmer_2013, author = {R.~P.~Widmer and S.~J.~Ferguson}, title = {{A comparison and verification of computational methods to determine the permeability of vertebral trabecular bone}}, journal = {Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine}, year = 2013, volume = 227, number = 6, pages = {617--628}, note = {\url{http://dx.doi.org/10.1177/0954411912462814}} }  [67] D. Fuentes, A. Elliott, J. S. Weinberg, A. Shetty, J. D. Hazle, and R. J. Stafford. An inverse problem approach to recovery of in vivo nanoparticle concentrations from thermal image monitoring of MR-guided laser induced thermal therapy. Annals of Biomedical Engineering, 41(1):100-111, January 2013. http://dx.doi.org/10.1007/s10439-012-0638-9. @article{Fuentes_2013, author = {D.~Fuentes and A.~Elliott and J.~S.~Weinberg and A.~Shetty and J.~D.~Hazle and R.~J.~Stafford}, title = {{An inverse problem approach to recovery of \textit{in vivo} nanoparticle concentrations from thermal image monitoring of MR-guided laser induced thermal therapy}}, journal = {Annals of Biomedical Engineering}, year = 2013, volume = 41, number = 1, month = jan, pages = {100--111}, note = {\url{http://dx.doi.org/10.1007/s10439-012-0638-9}} }  [68] D. B. P. Huynh, D. J. Knezevic, and A. T. Patera. A static condensation reduced basis element method: approximation and a posteriori error estimation. ESAIM: Mathematical Modelling and Numerical Analysis, 47(1):213-251, January 2013. http://dx.doi.org/10.1051/m2an/2012022. @article{Huynh_2013, author = {D.~B.~P.~Huynh and D.~J.~Knezevic and A.~T.~Patera}, title = {{A static condensation reduced basis element method: approximation and a posteriori error estimation}}, journal = {ESAIM: Mathematical Modelling and Numerical Analysis}, month = jan, year = 2013, volume = 47, number = 1, pages = {213--251}, note = {\url{http://dx.doi.org/10.1051/m2an/2012022}} }  [69] V. Vavourakis, D. Loukidis, D. C. Charmpis, and P. Papanastasiou. Assessment of remeshing and remapping strategies for large deformation elastoplastic finite element analysis. Computers & Structures, 114-115:133-146, January 2013. http://dx.doi.org/10.1016/j.compstruc.2012.09.010. @article{Vavourakis_2013, author = {V.~Vavourakis and D.~Loukidis and D.~C.~Charmpis and P.~Papanastasiou}, title = {{Assessment of remeshing and remapping strategies for large deformation elastoplastic finite element analysis}}, journal = {Computers \& Structures}, year = 2013, volume = {114--115}, month = jan, pages = {133--146}, note = {\url{http://dx.doi.org/10.1016/j.compstruc.2012.09.010}} }  [70] Y. Zhu, X. Y. Luo, H. M. Wang, R. W. Ogden, and C. Berry. Three-dimensional non-linear buckling of thick-walled elastic tubes under pressure. International Journal of Non-Linear Mechanics, 48, January 2013. http://dx.doi.org/10.1016/j.ijnonlinmec.2012.06.013. @article{Zhu_2013, author = {Y.~Zhu and X.~Y.~Luo and H.~M.~Wang and R.~W.~Ogden and C.~Berry}, title = {{Three-dimensional non-linear buckling of thick-walled elastic tubes under pressure}}, journal = {International Journal of Non-Linear Mechanics}, year = 2013, volume = 48, month = jan, note = {\url{http://dx.doi.org/10.1016/j.ijnonlinmec.2012.06.013}} }  [71] R. Vetter, F. K. Wittel, N. Stoop, and H. J. Herrmann. Finite element simulation of dense wire packings. European Journal of Mechanics - A/Solids, 37:160-171, January 2013. http://dx.doi.org/10.1016/j.euromechsol.2012.06.007, http://arxiv.org/abs/1111.5128v2. @article{Vetter_2013, author = {R.~Vetter and F.~K.~Wittel and N.~Stoop and H.~J.~Herrmann}, title = {{Finite element simulation of dense wire packings}}, journal = {European Journal of Mechanics - A/Solids}, year = 2013, volume = 37, month = jan, pages = {160--171}, note = {\url{http://dx.doi.org/10.1016/j.euromechsol.2012.06.007}, \url{http://arxiv.org/abs/1111.5128v2}} } 

## 2012

 [1] D. K. Francis, J. Deang, R. S. Florea, D. R. Gaston, N. Lee, S. Nouranian, C. J. Permann, J. Rudd, D. Seely, W. R. Whittington, and M. F. Horstemeyer. Characterization and failure analysis of a polymeric clamp hanger component. Engineering Failure Analysis, 26:230-239, December 2012. http://dx.doi.org/10.1016/j.engfailanal.2012.07.020. @article{Francis_2012, author = {D.~K.~Francis and J.~Deang and R.~S.~Florea and D.~R.~Gaston and N.~Lee and S.~Nouranian and C.~J.~Permann and J.~Rudd and D.~Seely and W.~R.~Whittington and M.~F.~Horstemeyer}, title = {{Characterization and failure analysis of a polymeric clamp hanger component}}, journal = {Engineering Failure Analysis}, year = 2012, month = dec, volume = 26, pages = {230--239}, note = {\url{http://dx.doi.org/10.1016/j.engfailanal.2012.07.020}} }  [2] T. Sumner, R. Hu, and T. H. Fanning. Verification test suite for systems analysis tools. Technical Report ANL/NE-12/61, Argonne National Laboratory, December 2012. http://www.ipd.anl.gov/anlpubs/2013/02/75298.pdf. @techreport{Sumner_2012, author = {T.~Sumner and R.~Hu and T.~H.~Fanning}, title = {{Verification test suite for systems analysis tools}}, institution = {Argonne National Laboratory}, day = {21}, month = dec, year = {2012}, number = {ANL/NE-12/61}, note = {\url{http://www.ipd.anl.gov/anlpubs/2013/02/75298.pdf}} }  [3] J. D. Galloway, N. N. Carlson, and C. Unal. BISON framework for the analysis of performance of metallic fuels. Technical Report LA-UR-12-26297, Los Alamos National Laboratory, December 2012. http://www.osti.gov/bridge/purl.cover.jsp?purl=/1055254/. @techreport{Galloway_2012, author = {J.~D.~Galloway and N.~N.~Carlson and C.~Unal}, title = {{BISON framework for the analysis of performance of metallic fuels}}, institution = {Los Alamos National Laboratory}, month = dec, year = {2012}, number = {LA-UR-12-26297}, note = {\url{http://www.osti.gov/bridge/purl.cover.jsp?purl=/1055254/}} }  [4] F. E. Curtis, J. Huber, O. Schenk, and A. Wächter. A note on the implementation of an interior-point algorithm for nonlinear optimization with inexact step computations. Mathematical Programming, Ser. B, 136(1):209-227, December 2012. http://dx.doi.org/10.1007/s10107-012-0557-4. @article{Curtis_2012, author = {F.~E.~Curtis and J.~Huber and O.~Schenk and A.~W\"{a}chter}, title = {{A note on the implementation of an interior-point algorithm for nonlinear optimization with inexact step computations}}, month = dec, year = 2012, pages = {209--227}, volume = {136}, number = {1}, note = {\url{http://dx.doi.org/10.1007/s10107-012-0557-4}}, journal = {Mathematical Programming, Ser.\ B} }  [5] A. L. Rossa and A. L. G. A. Coutinho. Parallel adaptive simulation of coupled incompressible viscous flow and advective-diffusive transport using stabilized FEM formulation. CLEI (Latin-American Center for Informatics Studies) Electronic Journal, 15(3), December 2012. http://www.clei.cl/cleiej/papers/v15i3p1.pdf. @article{Rossa_2012, author = {A.~L.~Rossa and A.~L.~G.~A.~Coutinho}, title = {{Parallel adaptive simulation of coupled incompressible viscous flow and advective-diffusive transport using stabilized FEM formulation}}, journal = {CLEI (Latin-American Center for Informatics Studies) Electronic Journal}, year = 2012, volume = 15, number = 3, month = dec, note = {\url{http://www.clei.cl/cleiej/papers/v15i3p1.pdf}} }  [6] S. Oliveira, A.-M. Toader, and P. Vieira. Damage identification in a concrete dam by fitting measured modal parameters. Nonlinear Analysis: Real World Applications, 13(6):2888-2899, December 2012. http://dx.doi.org/10.1016/j.nonrwa.2012.05.003. @article{Oliveira_2012, author = {S.~Oliveira and A.-M.~Toader and P.~Vieira}, title = {{Damage identification in a concrete dam by fitting measured modal parameters}}, journal = {Nonlinear Analysis: Real World Applications}, year = 2012, volume = 13, number = 6, month = dec, pages = {2888--2899}, note = {\url{http://dx.doi.org/10.1016/j.nonrwa.2012.05.003}} }  [7] P.-Y. Trépanier, I. Fortin, C. Lambert, and F. Lacroix. A Monte Carlo based formalism to identify potential locations at high risk of tumor recurrence with a numerical model for glioblastoma multiforme. Medical Physics, 39(11):6682-6691, November 2012. http://dx.doi.org/10.1118/1.4757972. @article{Trepanier_2012, author = {P.-Y.~Tr\'{e}panier and I.~Fortin and C.~Lambert and F.~Lacroix}, title = {{A Monte Carlo based formalism to identify potential locations at high risk of tumor recurrence with a numerical model for glioblastoma multiforme}}, journal = {Medical Physics}, year = 2012, volume = 39, number = 11, month = nov, pages = {6682--6691}, note = {\url{http://dx.doi.org/10.1118/1.4757972}} }  [8] K. T. Clarno et al. The AMP (Advanced MultiPhysics) nuclear fuel performance code. Nuclear Engineering and Design, 252:108-120, November 2012. http://dx.doi.org/10.1016/j.nucengdes.2012.07.018. @article{Clarno_2012, author = {K.~T.~Clarno and others}, title = {{The AMP (Advanced MultiPhysics) nuclear fuel performance code}}, journal = {Nuclear Engineering and Design}, year = 2012, volume = 252, month = nov, pages = {108--120}, note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2012.07.018}} }  [9] B. Amaziane, M. Jurak, and A. Keko. Numerical simulations of water-gas flow in heterogeneous porous media with discontinuous capillary pressures by the concept of the global pressure. Journal of Computational and Applied Mathematics, 236(17):4227-4244, November 2012. http://dx.doi.org/10.1016/j.cam.2012.05.013. @article{Amaziane_2012, author = {B.~Amaziane and M.~Jurak and A.~Keko}, title = {{Numerical simulations of water-gas flow in heterogeneous porous media with discontinuous capillary pressures by the concept of the global pressure}}, journal = {Journal of Computational and Applied Mathematics}, year = 2012, month = nov, volume = 236, number = 17, pages = {4227--4244}, note = {\url{http://dx.doi.org/10.1016/j.cam.2012.05.013}} }  [10] C. J. Stull, B. J. Williams, and C. Unal. Assessing the effect of parametric uncertainty on the FRAPCON-3.4 thermal conductivity model. Technical Report LA-UR-12-25426, Los Alamos National Laboratory, October 2012. http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-12-25426. @techreport{Stull_2012, author = {C.~J.~Stull and B.~J.~Williams and C.~Unal}, title = {{Assessing the effect of parametric uncertainty on the FRAPCON-3.4 thermal conductivity model}}, institution = {Los Alamos National Laboratory}, month = oct, year = 2012, number = {LA-UR-12-25426}, note = {\url{http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-12-25426}} }  [11] J. Ortensi, A. A. Bingham, D. Andrs, and R. C. Martineau. Initial coupling of the RELAP-7 and PRONGHORN applications. Technical Report INL/EXT-12-27350, Idaho National Laboratory, October 2012. http://dx.doi.org/10.2172/1060984. @techreport{Ortensi_2012, author = {J.~Ortensi and A.~A.~Bingham and D.~Andrs and R.~C.~Martineau}, title = {{Initial coupling of the RELAP-7 and PRONGHORN applications}}, institution = {Idaho National Laboratory}, month = oct, year = {2012}, number = {INL/EXT-12-27350}, note = {\url{http://dx.doi.org/10.2172/1060984}} }  [12] M. P. Short. Effects of fluid flow on 2D and 3D coupled microscale simulations of porous boiling deposits (CRUD) in PWRs. In 9th International Topical Meeting on Nuclear Thermal-Hydraulics, Operation and Safety (NUTHOS-9), Kaohsiung, Taiwan, September 9-13, 2012. http://web.mit.edu/hereiam/Public/Andrew/NUTHOS-CRUD-Paper.docx. @inproceedings{Short_2012, author = {M.~P.~Short}, title = {{Effects of fluid flow on 2D and 3D coupled microscale simulations of porous boiling deposits (CRUD) in PWRs}}, booktitle = {{9th International Topical Meeting on Nuclear Thermal-Hydraulics, Operation and Safety (NUTHOS-9), Kaohsiung, Taiwan}}, month = sep # {~9--13,}, year = {2012}, note = {\url{http://web.mit.edu/hereiam/Public/Andrew/NUTHOS-CRUD-Paper.docx}} }  [13] P. Medvedev. Fuel performance modeling results for representative FCRD irradtiation experiments: projected deformation in the annular AFC-3A U-10Zr fuel pins and comparison to alternative designs. Technical Report INL/EXT-12-27183, Idaho National Laboratory, September 2012. http://www.inl.gov/technicalpublications/Documents/5753426.pdf. @techreport{Medvedev_2012, author = {P.~Medvedev}, title = {{Fuel performance modeling results for representative FCRD irradtiation experiments: projected deformation in the annular AFC-3A U-10Zr fuel pins and comparison to alternative designs}}, institution = {Idaho National Laboratory}, month = sep, year = {2012}, number = {INL/EXT-12-27183}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5753426.pdf}} }  [14] S. R. Novascone, J. D. Hales, B. W. Spencer, and R. L. Williamson. Assessment of PCMI simulation using the multidimensional multiphysics BISON fuel performance code. Technical Report INL/CON-12-24744, Idaho National Laboratory, September 2012. http://www.inl.gov/technicalpublications/Documents/5538926.pdf. @techreport{Novascone_2012, author = {S.~R.~Novascone and J.~D.~Hales and B.~W.~Spencer and R.~ L.~Williamson}, title = {{Assessment of PCMI simulation using the multidimensional multiphysics BISON fuel performance code}}, institution = {Idaho National Laboratory}, month = sep, year = {2012}, number = {INL/CON-12-24744}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5538926.pdf}} }  [15] B. W. Spencer, J. D. Hales, S. R. Novascone, and R. L. Williamson. 3D simulation of missing pellet surface defects in light water reactor fuel rods. Technical Report INL/CON-12-24745, Idaho National Laboratory, September 2012. http://www.inl.gov/technicalpublications/Documents/5561105.pdf. @techreport{Spencer_2012, author = {B.~W.~Spencer and J.~D.~Hales and S.~R.~Novascone and R.~L.~Williamson}, title = {{3D simulation of missing pellet surface defects in light water reactor fuel rods}}, institution = {Idaho National Laboratory}, month = sep, year = {2012}, number = {INL/CON-12-24745}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5561105.pdf}} }  [16] A. A. Bingham, J. Ortensi, R. Jain, I. Grindeanu, and T. Tautges. SHARP/PRONGHORN interoperability: mesh generation. Technical Report INL/EXT-12-27171, Idaho National Laboratory, September 2012. http://dx.doi.org/10.2172/1060997. @techreport{Bingham_2012, author = {A.~A.~Bingham and J.~Ortensi and R.~Jain and I.~Grindeanu and T.~Tautges}, title = {{SHARP/PRONGHORN interoperability: mesh generation}}, institution = {Idaho National Laboratory}, month = sep, year = 2012, number = {INL/EXT-12-27171}, note = {\url{http://dx.doi.org/10.2172/1060997}} }  [17] D. Gaston, L. Guo, G. Hansen, H. Huang, R. Johnson, D. Knoll, C. Newman, H. K. Park, R. Podgorney, M. Tonks, and R. Williamson. Parallel algorithms and software for nuclear, energy, and environmental applications. Part II: Multiphysics software. Communications in Computational Physics, 12(3):834-865, September 2012. http://www.global-sci.com/galley/ESCO2010-13.pdf. @article{Gaston_2012, author = {D.~Gaston and L.~Guo and G.~Hansen and H.~Huang and R.~Johnson and D.~Knoll and C.~Newman and H.~K.~Park and R.~Podgorney and M.~Tonks and R.~Williamson}, title = {{Parallel algorithms and software for nuclear, energy, and environmental applications. Part II: Multiphysics software}}, journal = {Communications in Computational Physics}, year = 2012, month = sep, volume = 12, number = 3, pages = {834--865}, note = {\url{http://www.global-sci.com/galley/ESCO2010-13.pdf}} }  [18] A.-L. Gerner and K. Veroy. Reduced basis a posteriori error bounds for symmetric parametrized saddle point problems. ArXiv e-prints, August 24, 2012. http://arxiv.org/abs/1208.5011. @article{Gerner_2012c, author = {A.-L.~Gerner and K.~Veroy}, title = {{Reduced basis \emph{a posteriori} error bounds for symmetric parametrized saddle point problems}}, month = aug # {~24,}, year = 2012, journal = {ArXiv e-prints}, note = {\url{http://arxiv.org/abs/1208.5011}} }  [19] A.-L. Gerner, A. Reusken, and K. Veroy. Reduced basis a posteriori error bounds for the instationary Stokes equations. ArXiv e-prints, August 24, 2012. http://arxiv.org/abs/1208.5010. @article{Gerner_2012b, author = {A.-L.~Gerner and A.~Reusken and K.~Veroy}, title = {{Reduced basis \emph{a posteriori} error bounds for the instationary Stokes equations}}, month = aug # {~24,}, year = 2012, journal = {ArXiv e-prints}, note = {\url{http://arxiv.org/abs/1208.5010}} }  [20] P. T. Bauman, J. T. Oden, E. E. Prudencio, S. Prudhomme, and K. Ravi-Chandar. Dynamic data driven application systems for monitoring damage in composite materials under dynamic loads. Technical Report 12-37, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, August 2012. http://www.ices.utexas.edu/media/reports/2012/1237.pdf. @techreport{Bauman_2012, author = {P.~T.~Bauman and J.~T.~Oden and E.~E.~Prudencio and S.~Prudhomme and K.~Ravi-Chandar}, title = {{Dynamic data driven application systems for monitoring damage in composite materials under dynamic loads}}, institution = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin}, month = aug, year = 2012, number = {12-37}, note = {\url{http://www.ices.utexas.edu/media/reports/2012/1237.pdf}} }  [21] I. Kalashnikova and S. Arunajatesan. A stable Galerkin reduced order model (ROM) for compressible flow. In 10th World Congress on Computational Mechanics (WCCM 2012), São Paulo, Brazil, July 8-13, 2012. http://www.sandia.gov/~ikalash/WCCM2012-18407.pdf. @inproceedings{Kalashnikova_2012, author = {I.~Kalashnikova and S.~Arunajatesan}, title = {{A stable Galerkin reduced order model (ROM) for compressible flow}}, booktitle = {{10th World Congress on Computational Mechanics (WCCM 2012), S\~{a}o Paulo, Brazil}}, month = jul # {~8--13,}, year = {2012}, note = {\url{http://www.sandia.gov/~ikalash/WCCM2012-18407.pdf}} }  [22] L. Guo, C. Lu, H. Huang, and D. R. Gaston. Reactive transport modeling using a parallel fully-coupled simulator based on preconditioned Jacobian-free Newton-Krylov. Technical Report INL/CON-12-25018, Idaho National Laboratory, June 2012. http://www.inl.gov/technicalpublications/Documents/5436971.pdf. @techreport{Guo_2012, author = {L.~Guo and C.~Lu and H.~Huang and D.~R.~Gaston}, title = {{Reactive transport modeling using a parallel fully-coupled simulator based on preconditioned Jacobian-free Newton-Krylov}}, institution = {Idaho National Laboratory}, month = jun, year = {2012}, number = {INL/CON-12-25018}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5436971.pdf}} }  [23] F. N. Gleicher, Y. Wang, D. R. Gaston, and R. Martineau. The method of manufactured solutions for RattleSnake, a SN radiation transport solver inside the MOOSE framework. Technical Report INL/CON-12-24712, Idaho National Laboratory, June 2012. http://www.inl.gov/technicalpublications/Documents/5436964.pdf. @techreport{Gleicher_2012, author = {F.~N.~Gleicher and Y.~Wang and D.~R.~Gaston and R.~Martineau}, title = {{The method of manufactured solutions for RattleSnake, a $S_N$ radiation transport solver inside the MOOSE framework}}, institution = {Idaho National Laboratory}, month = jun, year = {2012}, number = {INL/CON-12-24712}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5436964.pdf}} }  [24] R. Podgorney, H. Huang, M. Plummer, and D. Gaston. A globally-implicit computational framework for physics-based simulation of coupled thermal-hydro-mechanical problems: Application to sustainability of geothermal reservoirs. Orkustofnun (National Energy Authority), June 2012. http://www.os.is/gogn/Skyrslur/OS-2012/OS-2012-06/OS-2012-06-01.pdf. @misc{Podgorney_2012b, author = {R.~Podgorney and H.~Huang and M.~Plummer and D.~Gaston}, title = {{A globally-implicit computational framework for physics-based simulation of coupled thermal-hydro-mechanical problems: Application to sustainability of geothermal reservoirs}}, month = jun, year = 2012, howpublished = {{Orkustofnun (National Energy Authority)}}, note = {\url{http://www.os.is/gogn/Skyrslur/OS-2012/OS-2012-06/OS-2012-06-01.pdf}} }  [25] J. J. Camata, A. L. Rossa, A. M. P. Valli, L. Catabriga, G. F. Carey, and A. L. G. A. Coutinho. Reordering and incomplete preconditioning in serial and parallel adaptive mesh refinement and coarsening flow solutions. International Journal for Numerical Methods in Fluids, 69(4):802-823, June 2012. http://dx.doi.org/10.1002/fld.2614. @article{Camata_2012, author = {J.~J.~Camata and A.~L.~Rossa and A.~M.~P.~Valli and L.~Catabriga and G.~F.~Carey and A.~L.~G.~A.~Coutinho}, title = {{Reordering and incomplete preconditioning in serial and parallel adaptive mesh refinement and coarsening flow solutions}}, journal = {International Journal for Numerical Methods in Fluids}, year = 2012, volume = 69, pages = {802--823}, number = 4, month = jun, note = {\url{http://dx.doi.org/10.1002/fld.2614}} }  [26] S. Steiger. NEMO5 User Manual. Network for Computational Nanotechnology, Purdue University, May 17, 2012. https://engineering.purdue.edu/gekcogrp/software-projects/nemo5/nemo5_manual.pdf. @manual{NEMO5, author = {S.~Steiger}, title = {{NEMO5 User Manual}}, organization = {Network for Computational Nanotechnology}, address = {Purdue University}, edition = {}, month = may # {~17,}, year = 2012, note = {\url{https://engineering.purdue.edu/gekcogrp/software-projects/nemo5/nemo5_manual.pdf}} }  [27] K. W. Schulz, R. Ulerich, N. Malaya, P. T. Bauman, R. Stogner, and C. Simmons. Early experiences porting scientific applications to the Many Integrated Core (MIC) platform. TACC-Intel Highly Parallel Computing Symposium, Austin, TX, April 10-11, 2012. http://www.tacc.utexas.edu/documents/13601/aa8e98bc-3544-4136-81aa-3920ae882a65. @misc{Schulz_2012, author = {K.~W.~Schulz and R.~Ulerich and N.~Malaya and P.~T.~Bauman and R.~Stogner and C.~Simmons}, title = {{Early experiences porting scientific applications to the Many Integrated Core (MIC) platform}}, month = apr # {~10--11,}, year = 2012, howpublished = {{TACC-Intel Highly Parallel Computing Symposium, Austin, TX}}, note = {\url{http://www.tacc.utexas.edu/documents/13601/aa8e98bc-3544-4136-81aa-3920ae882a65}} }  [28] R. L. Williamson and S. R. Novascone. Application of the BISON fuel performance code to the FUMEX-III coordinated research project. Technical Report INL/EXT-12-25530, Idaho National Laboratory, April 2012. http://www.inl.gov/technicalpublications/Documents/5427220.pdf. @techreport{Williamson_2012b, author = {R.~L.~Williamson and S.~R.~Novascone}, title = {{Application of the BISON fuel performance code to the FUMEX-III coordinated research project}}, institution = {Idaho National Laboratory}, month = apr, year = {2012}, number = {INL/EXT-12-25530}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5427220.pdf}} }  [29] L. Zhang, M. R. Tonks, P. C. Millett, Y. Zhang, K. Chockalingam, and B. Biner. Phase-field modeling of temperature gradient driven pore migration coupling with thermal conduction. Computational Materials Science, 56:161-165, April 2012. http://dx.doi.org/10.1016/j.commatsci.2012.01.002. @article{Zhang_2012, author = {L.~Zhang and M.~R.~Tonks and P.~C.~Millett and Y.~Zhang and K.~Chockalingam and B.~Biner}, title = {{Phase-field modeling of temperature gradient driven pore migration coupling with thermal conduction}}, journal = {Computational Materials Science}, year = 2012, month = apr, volume = 56, pages = {161--165}, note = {\url{http://dx.doi.org/10.1016/j.commatsci.2012.01.002}} }  [30] A. Corsini, A. Marchegiani, F. Rispoli, P. Venturini, and A. G. Sheard. Predicting blade leading edge erosion in an axial induced draft fan. Journal of Engineering for Gas Turbines and Power, 134:042601 (9pp), April 2012. http://dx.doi.org/10.1115/1.4004724. @article{Corsini_2012, author = {A.~Corsini and A.~Marchegiani and F.~Rispoli and P.~Venturini and A.~G.~Sheard}, title = {{Predicting blade leading edge erosion in an axial induced draft fan}}, journal = {Journal of Engineering for Gas Turbines and Power}, year = 2012, month = apr, volume = 134, pages = {042601 (9pp)}, note = {\url{http://dx.doi.org/10.1115/1.4004724}} }  [31] Y. F. Zhu, H. M. Wang, R. W. Ogden, and C. Berry. Three-dimensional buckling of thick-walled elastic tubes under pressure. In X. Luo, W. Li, and N. Hill, editors, Workshop on Soft Tissue Modelling, page 40. University of Glasgow, Glasgow, UK, March 14-16 2012. http://www.maths.gla.ac.uk/~xl/Program.pdf. @inproceedings{Zhu_2012, author = {Y.~F.~Zhu and H.~M.~Wang and R.~W.~Ogden and C.~Berry}, title = {{Three-dimensional buckling of thick-walled elastic tubes under pressure}}, booktitle = {{Workshop on Soft Tissue Modelling}}, editor = {X.~Luo and W.~Li and N.~Hill}, pages = {40}, publisher = {University of Glasgow, Glasgow, UK}, year = {2012}, month = mar # {~14--16}, note = {\url{http://www.maths.gla.ac.uk/~xl/Program.pdf}} }  [32] J. R. Hussan, P. J. Hunter, and M. L. Trew. A clustering method for calculating membrane currents in cardiac electrical models. Cardiovascular Engineering and Technology, 3(1):3-16, March 2012. http://dx.doi.org/10.1007/s13239-011-0070-6. @article{Hussan_2012, author = {J.~R.~Hussan and P.~J.~Hunter and M.~L.~Trew}, title = {{A clustering method for calculating membrane currents in cardiac electrical models}}, journal = {Cardiovascular Engineering and Technology}, year = 2012, volume = 3, number = 1, pages = {3--16}, month = mar, note = {\url{http://dx.doi.org/10.1007/s13239-011-0070-6}} }  [33] S. Akkoyun et al. AGATA-Advanced GAmma Tracking Array. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 668:26-58, March 2012. http://dx.doi.org/10.1016/j.nima.2011.11.081. @article{Akkoyun_2012, author = {S.~Akkoyun and others}, title = {{AGATA---Advanced GAmma Tracking Array}}, journal = {Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment}, year = 2012, volume = 668, month = mar, pages = {26--58}, note = {\url{http://dx.doi.org/10.1016/j.nima.2011.11.081}} }  [34] V. S. Mahadevan, J. C. Ragusa, and V. A. Mousseau. A verification exercise in multiphysics simulations for coupled reactor physics calculations. Progress in Nuclear Energy, 55:12-32, March 2012. http://dx.doi.org/10.1016/j.pnucene.2011.10.013. @article{Mahadevan_2012, author = {V.~S.~Mahadevan and J.~C.~Ragusa and V.~A.~Mousseau}, title = {{A verification exercise in multiphysics simulations for coupled reactor physics calculations}}, journal = {Progress in Nuclear Energy}, year = {2012}, volume = 55, month = mar, pages = {12--32}, note = {\url{http://dx.doi.org/10.1016/j.pnucene.2011.10.013}} }  [35] R. Podgorney, C. Lu, and H. Huang. Thermo-hydro-mechanical modeling of working fluid injection and thermal energy extraction in EGS fractures and rock matrix. In Proceedings of Thirty-Seventh Workshop on Geothermal Reservoir Engineering, Stanford University, Stanford California, January 30 - February 1, 2012. http://pangea.stanford.edu/ERE/db/GeoConf/papers/SGW/2012/Podgorney.pdf. @inproceedings{Podgorney_2012, author = {R.~Podgorney and C.~Lu and H.~Huang}, title = {{Thermo-hydro-mechanical modeling of working fluid injection and thermal energy extraction in EGS fractures and rock matrix}}, booktitle = {{Proceedings of Thirty-Seventh Workshop on Geothermal Reservoir Engineering, Stanford University, Stanford California}}, month = {January 30 -- February 1, }, year = {2012}, note = {\url{http://pangea.stanford.edu/ERE/db/GeoConf/papers/SGW/2012/Podgorney.pdf}} }  [36] K. Steih and K. Urban. Space-time reduced basis methods for time-periodic partial differential equations. In I. Troch and F. Breitenecker, editors, 7th Vienna International Conference on Mathematical Modelling, pages 710-715. International Federation of Automatic Control, 2012. http://dx.doi.org/10.3182/20120215-3-AT-3016.00126. @inproceedings{Steih_2012, author = {K.~Steih and K.~Urban}, title = {{Space-time reduced basis methods for time-periodic partial differential equations}}, booktitle = {{7th Vienna International Conference on Mathematical Modelling}}, editor = {I.~Troch and F.~Breitenecker}, pages = {710--715}, publisher = {International Federation of Automatic Control}, year = {2012}, note = {\url{http://dx.doi.org/10.3182/20120215-3-AT-3016.00126}} }  [37] M. R. Tonks, D. R. Gaston, P. C. Millett, D. Andrs, and P. Talbot. An object-oriented finite element framework for multiphysics phase field simulations. Computational Materials Science, 51(1):20-29, January 2012. http://dx.doi.org/10.1016/j.commatsci.2011.07.028. @article{Tonks_2012, author = {M.~R.~Tonks and D.~R.~Gaston and P.~C.~Millett and D.~Andrs and P.~Talbot}, title = {{An object-oriented finite element framework for multiphysics phase field simulations}}, journal = {Computational Materials Science}, year = 2012, month = jan, volume = 51, number = 1, pages = {20--29}, note = {\url{http://dx.doi.org/10.1016/j.commatsci.2011.07.028}} }  [38] A. E. Slaughter and N. Zabaras. A phase-tracking snow micro-structure model. In Proceedings of the 2012 International Snow Science Workshop, Anchorange, Alaska, pages 395-397, 2012. http://arc.lib.montana.edu/snow-science/objects/issw-2012-395-397.pdf. @inproceedings{Slaughter_2012, author = {A.~E.~Slaughter and N.~Zabaras}, title = {{A phase-tracking snow micro-structure model}}, booktitle = {{Proceedings of the 2012 International Snow Science Workshop, Anchorange, Alaska}}, pages = {395--397}, year = {2012}, note = {\url{http://arc.lib.montana.edu/snow-science/objects/issw-2012-395-397.pdf}} }  [39] R. M. Bordas, K. Gillow, D. Gavaghan, B. Rodriguez, and D. Kay. A bidomain model of the ventricular specialized conduction system of the heart. SIAM J. Appl. Math., 72(5):1618-1643, 2012. http://dx.doi.org/10.1137/11082796X. @article{Bordas_2012, author = {R.~ M.~Bordas and K.~Gillow and D.~Gavaghan and B.~Rodriguez and D.~Kay}, title = {{A bidomain model of the ventricular specialized conduction system of the heart}}, journal = {SIAM J. Appl. Math.}, year = 2012, volume = 72, number = 5, pages = {1618--1643}, note = {\url{http://dx.doi.org/10.1137/11082796X}} }  [40] J. D. Hales, S. R. Novascone, R. L. Williamson, D. R. Gaston, and M. R. Tonks. Solving nonlinear solid mechanics problems with the Jacobian-free Newton Krylov Method. Computer Modeling in Engineering & Sciences, 84(2):123-152, 2012. http://www.techscience.com/doi/10.3970/cmes.2012.084.123.html. @article{Hales_2012, author = {J.~D.~Hales and S.~R.~Novascone and R.~L.~Williamson and D.~R.~Gaston and M.~R.~Tonks}, title = {{Solving nonlinear solid mechanics problems with the Jacobian-free Newton Krylov Method}}, journal = {Computer Modeling in Engineering \& Sciences}, year = 2012, volume = 84, number = 2, pages = {123--152}, note = {\url{http://www.techscience.com/doi/10.3970/cmes.2012.084.123.html}} }  [41] F. Bassi, L. Botti, A. Colombo, D. A. Di Pietro, and P. Tesini. On the flexibility of agglomeration based physical space discontinuous Galerkin discretizations. J. Computational Physics, 231(1):45-65, January 2012. http://dx.doi.org/10.1016/j.jcp.2011.08.018. @article{Bassi_2012, author = {F.~Bassi and L.~Botti and A.~Colombo and D.~A.~Di Pietro and P.~Tesini}, title = {{On the flexibility of agglomeration based physical space discontinuous Galerkin discretizations}}, journal = {J. Computational Physics}, year = 2012, volume = 231, number = 1, month = jan, pages = {45--65}, note = {\url{http://dx.doi.org/10.1016/j.jcp.2011.08.018}} }  [42] T. Andrijauskas, A. A. Shylau, and I. V. Zozoulenko. Thomas-Fermi and Poisson modeling of gate electrostatics in graphene nanoribbon. Lithuanian Journal of Physics, 52(1):63-69, 2012. http://www.itpa.lt/~lfd/Lfz/521/04/Ljp52104.pdf. @article{Andrijauskas_2012, author = {T.~Andrijauskas and A.~A.~Shylau and I.~V.~Zozoulenko}, title = {{Thomas-Fermi and Poisson modeling of gate electrostatics in graphene nanoribbon}}, journal = {Lithuanian Journal of Physics}, year = 2012, volume = 52, number = 1, pages = {63--69}, note = {\url{http://www.itpa.lt/~lfd/Lfz/521/04/Ljp52104.pdf}} }  [43] R. L. Williamson, J. D. Hales, S. R. Novascone, M. R. Tonks, D. R. Gaston, C. J. Permann, D. Andrs, and R. C. Martineau. Multidimensional multiphysics simulation of nuclear fuel behavior. Journal of Nuclear Materials, 423(1-3):149-163, 2012. http://dx.doi.org/10.1016/j.jnucmat.2012.01.012. @article{Williamson_2012, author = {R.~L.~Williamson and J.~D.~Hales and S.~R.~Novascone and M.~R.~Tonks and D.~R.~Gaston and C.~J.~Permann and D.~Andrs and R.~C.~Martineau}, title = {{Multidimensional multiphysics simulation of nuclear fuel behavior}}, journal = {Journal of Nuclear Materials}, year = 2012, volume = 423, number = {1--3}, pages = {149--163}, note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2012.01.012}} }  [44] J. L. Eftang, D. B. P. Huynh, D. J. Knezevic, and A. T. Patera. A two-step certified reduced basis method. Journal of Scientific Computing, 51(1):28-58, 2012. http://dx.doi.org/10.1007/s10915-011-9494-2. @article{Eftang_2012, author = {J.~L.~Eftang and D.~B.~P.~Huynh and D.~J.~Knezevic and A.~T.~Patera}, title = {{A two-step certified reduced basis method}}, journal = {Journal of Scientific Computing}, volume = 51, number = 1, pages = {28--58}, year = 2012, note = {\url{http://dx.doi.org/10.1007/s10915-011-9494-2}} }  [45] A.-L. Gerner and K. Veroy. Reduced basis a posteriori error bounds for the instationary Stokes equations: a penalty approach. Technical Report AICES-2012/01-1, Aachen Institute for Advanced Study in Computational Engineering Science, January 2012. http://www.aices.rwth-aachen.de:8080/aices/preprint/documents/AICES-2012-01-01.pdf. @techreport{Gerner_2012, author = {A.-L.~Gerner and K.~Veroy}, title = {{Reduced basis a posteriori error bounds for the instationary Stokes equations: a penalty approach}}, institution = {Aachen Institute for Advanced Study in Computational Engineering Science}, day = {14}, month = jan, year = {2012}, number = {AICES-2012/01-1}, note = {\url{http://www.aices.rwth-aachen.de:8080/aices/ preprint/documents/AICES-2012-01-01.pdf}} }  [46] E. H. van Brummelen, K. G. van der Zee, V. V. Garg, and S. Prudhomme. Flux evaluation in primal and dual boundary-coupled problems. Journal of Applied Mechanics, 79(1):010904 (1-8), January 2012. http://dx.doi.org/10.1115/1.4005187. @article{Brummelen_2012, author = {E.~H.~van~Brummelen and K.~G.~van~der~Zee and V.~V.~Garg and S.~Prudhomme}, title = {{Flux evaluation in primal and dual boundary-coupled problems}}, journal = {Journal of Applied Mechanics}, year = 2012, volume = 79, month = jan, number = 1, pages = {010904~(1--8)}, note = {\url{http://dx.doi.org/10.1115/1.4005187}} }  [47] D. B. P. Huynh, D. J. Knezevic, and A. T. Patera. Certified reduced basis model validation: a frequentistic uncertainty framework. Computer Methods in Applied Mechanics and Engineering, 201-204:13-24, January 2012. http://dx.doi.org/10.1016/j.cma.2011.09.011. @article{Huynh_2012, author = {D.~B.~P.~Huynh and D.~J.~Knezevic and A.~T.~Patera}, title = {Certified Reduced Basis Model Validation: a Frequentistic Uncertainty Framework}, journal = {Computer Methods in Applied Mechanics and Engineering}, year = {2012}, volume = {201--204}, month = jan, pages = {13--24}, note = {\url{http://dx.doi.org/10.1016/j.cma.2011.09.011}} }  [48] Y. Wang, A. A. Bingham, J. Ortensi, and C. J. Permann. Improved neutronics treatment of burnable poisons for the prismatic HTR. 6th International Topical Meeting on High Temperature Reactor Technology (HTR2012), Tokyo, Japan, Oct. 28-Nov. 1, 2012. http://www.inl.gov/technicalpublications/Documents/5581182.pdf. @misc{Wang_2012, author = {Y.~Wang and A.~A.~Bingham and J.~Ortensi and C.~J.~Permann}, title = {{Improved neutronics treatment of burnable poisons for the prismatic HTR}}, howpublished = {6th International Topical Meeting on High Temperature Reactor Technology (HTR2012), Tokyo, Japan, Oct.~28--Nov.~1, 2012}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5581182.pdf}} }  [49] C. Rabiti, A. Alfonsi, D. Mandelli, J. Cogliati, and R. Martineau. RAVEN as control logic and probabilistic risk assessment driver for RELAP-7. ANS Winter Meeting, San Diego, CA, Nov. 11-15, 2012. http://www.inl.gov/technicalpublications/Documents/5581165.pdf. @misc{Rabiti_2012, author = {C. Rabiti and A. Alfonsi and D. Mandelli and J. Cogliati and R. Martineau}, title = {{RAVEN as control logic and probabilistic risk assessment driver for RELAP-7}}, howpublished = {ANS Winter Meeting, San Diego, CA, Nov.~11--15, 2012}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5581165.pdf}} } 

## 2011

 [1] A.-L. Gerner and K. Veroy. Certified reduced basis method for parameterized saddle point problems. Technical Report AICES-2011/11-01, Aachen Institute for Advanced Study in Computational Engineering Science, November 2011. http://www.aices.rwth-aachen.de:8080/aices/preprint/documents/AICES-2011-11-01.pdf. @techreport{Gerner_2011, author = {A.-L.~Gerner and K.~Veroy}, title = {{Certified reduced basis method for parameterized saddle point problems}}, institution = {Aachen Institute for Advanced Study in Computational Engineering Science}, day = {4}, month = nov, year = {2011}, number = {AICES-2011/11-01}, note = {\url{http://www.aices.rwth-aachen.de:8080/aices/preprint/documents/AICES-2011-11-01.pdf}} }  [2] R. Bordas, K. Gillow, Q. Lou, I. R. Efimov, D. Gavaghan, P. Kohl, V. Grau, and B. Rodriguez. Rabbit-specific ventricular model of cardiac electrophysiological function including specialized conduction system. Progress in Biophysics and Molecular Biology, 107(1):90-100, October 2011. http://dx.doi.org/10.1016/j.pbiomolbio.2011.05.002. @article{Bordas_2011, author = {R.~Bordas and K.~Gillow and Q.~Lou and I.~R.~Efimov and D.~Gavaghan and P.~Kohl and V.~Grau and B.~Rodriguez}, title = {{Rabbit-specific ventricular model of cardiac electrophysiological function including specialized conduction system}}, journal = {Progress in Biophysics and Molecular Biology}, year = 2011, volume = 107, number = 1, month = oct, pages = {90--100}, note = {\url{http://dx.doi.org/10.1016/j.pbiomolbio.2011.05.002}} }  [3] V. V. Garg, S. Prudhomme, K. G. van der Zee, and G. F. Carey. Adjoint consistent formulations of slip models for coupled electroosmotic flow systems. Technical Report 11-30, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, October 2011. http://django.ices.utexas.edu/media/reports/2011/1130.pdf. @techreport{Garg_2011, author = {V.~V.~Garg and S.~Prudhomme and K.~G.~van~der~Zee and G.~F.~Carey}, title = {{Adjoint consistent formulations of slip models for coupled electroosmotic flow systems}}, institution = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin}, month = oct, year = 2011, number = {11-30}, note = {\url{http://django.ices.utexas.edu/media/reports/2011/1130.pdf}} }  [4] A. Corsini, F. Rispoli, and E. Tuccimei. Development of air turbines for small power OWC plants. In Proceedings of the 9th European Wave and Tidal Energy Conference (EWTEC), September 5-9 2011. https://www.see.ed.ac.uk/~shs/Tidal%20Stream/EWTEC%202011%20full/EWTEC_CD/papers/322.pdf. @inproceedings{Corsini_2011b, author = {A.~Corsini and F.~Rispoli and E.~Tuccimei}, title = {{Development of air turbines for small power OWC plants}}, booktitle = {{Proceedings of the 9th European Wave and Tidal Energy Conference (EWTEC)}}, month = sep # {~5--9}, year = {2011}, note = {\url{https://www.see.ed.ac.uk/~shs/Tidal%20Stream/EWTEC%202011%20full/EWTEC_CD/papers/322.pdf}} }  [5] A. Günther, H. Lamecker, and M. Weiser. Direct LDDMM of Discrete Currents with Adaptive Finite Elements. In X. Pennec, S. Joshi, and M. Nielsen, editors, Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability, pages 1-14, September 2011. http://hal.inria.fr/docs/00/62/38/15/PDF/MFCA11_1_1.pdf. @inproceedings{Gunther_2011b, author = {A.~G{\"u}nther and H.~Lamecker and M.~Weiser}, title = {{Direct LDDMM of Discrete Currents with Adaptive Finite Elements}}, booktitle = {{Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability}}, editor = {X.~Pennec and S.~Joshi and M.~Nielsen}, pages = {1--14}, month = sep, year = {2011}, note = {\url{http://hal.inria.fr/docs/00/62/38/15/PDF/MFCA11_1_1.pdf}} }  [6] V. Vavourakis, Y. Papaharilaou, and J. A. Ekaterinaris. Coupled fluid-structure interaction hemodynamics in a zero-pressure state corrected arterial geometry. Journal of Biomechanics, 44(13):2453-2460, September 2011. http://dx.doi.org/10.1016/j.jbiomech.2011.06.024. @article{Vavourakis_2011, author = {V.~Vavourakis and Y.~Papaharilaou and J.~A.~Ekaterinaris}, title = {{Coupled fluid-structure interaction hemodynamics in a zero-pressure state corrected arterial geometry}}, journal = {Journal of Biomechanics}, volume = 44, number = 13, month = sep, pages = {2453--2460}, year = 2011, note = {\url{http://dx.doi.org/10.1016/j.jbiomech.2011.06.024}} }  [7] S. Berrone and M. Verani. A new marking strategy for the adaptive finite element approximation of optimal control constrained problems. Optimization Methods and Software, Special Issue: Advances in Shape and Topology Optimization: Theory, Numerics and New Application Areas, 26(4-5):747-775, August-October 2011. http://dx.doi.org/10.1080/10556788.2010.491866. @article{Berrone_2011, author = {S.~Berrone and M.~Verani}, title = {{A new marking strategy for the adaptive finite element approximation of optimal control constrained problems}}, journal = {Optimization Methods and Software, Special Issue: Advances in Shape and Topology Optimization: Theory, Numerics and New Application Areas}, year = 2011, month = {August--October}, volume = 26, number = {4--5}, pages = {747--775}, note = {\url{http://dx.doi.org/10.1080/10556788.2010.491866}} }  [8] O. A. Sopeju, M. Burtscher, A. Rane, and J. Browne. AutoSCOPE: Automatic suggestions for code optimizations using PerfExpert. In H. R. Arabnia, editor, Proceedings of the 2011 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'11), Las Vegas, NV, July 18-21, 2011. http://world-comp.org/p2011/PDP4432.pdf. @inproceedings{Sopeju_2011, author = {O.~A.~Sopeju and M.~Burtscher and A.~Rane and J.~Browne}, title = {{AutoSCOPE: Automatic suggestions for code optimizations using PerfExpert}}, booktitle = {{Proceedings of the 2011 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'11)}}, editor = {H.~R.~Arabnia}, month = jul # {~18--21,}, address = {Las Vegas, NV}, year = {2011}, note = {\url{http://world-comp.org/p2011/PDP4432.pdf}} }  [9] R. P. Widmer and S. J. Ferguson. A comparison of computational methods to determine the permeability of vertebral trabecular bone. In Proceedings of the 23rd Congress of the International Society of Biomechanics (ISB), July 3-7, 2011. http://homepages.ulb.ac.be/~labo/ISB2011/ISB2011_ScientificProgram_files/290.pdf. @inproceedings{Widmer_2011b, author = {R.~P.~Widmer and S.~J.~Ferguson}, title = {{A comparison of computational methods to determine the permeability of vertebral trabecular bone}}, booktitle = {{Proceedings of the 23rd Congress of the International Society of Biomechanics (ISB)}}, month = jul # {~3--7,}, year = {2011}, note = {\url{http://homepages.ulb.ac.be/~labo/ISB2011/ISB2011_ScientificProgram_files/290.pdf}} }  [10] E. H. van Brummelen, K. G. van der Zee, V. V. Garg, and S. Prudhomme. Flux evaluation in primal and dual boundary-coupled problems. Technical Report 11-22, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, July 2011. http://www.ices.utexas.edu/media/reports/2011/1122.pdf. @techreport{Brummelen_2011b, author = {E.~H.~van~Brummelen and K.~G.~van~der~Zee and V.~V.~Garg and S.~Prudhomme}, title = {{Flux evaluation in primal and dual boundary-coupled problems}}, institution = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin}, month = jul, year = 2011, number = {11-22}, note = {\url{http://www.ices.utexas.edu/media/reports/2011/1122.pdf}} }  [11] E. H. van Brummelen, K. G. van der Zee, V. V. Garg, and S. Prudhomme. Flux evaluation in primal and dual boundary-coupled problems. Technical Report 11-41, Centre for Analysis, Scientific computing and Applications (CASA), Dept. of Mathematics and Computer Science, Eindhoven University of Technology, July 2011. http://www.win.tue.nl/analysis/reports/rana11-41.pdf. @techreport{Brummelen_2011, author = {E.~H.~van~Brummelen and K.~G.~van~der~Zee and V.~V.~Garg and S.~Prudhomme}, title = {{Flux evaluation in primal and dual boundary-coupled problems}}, institution = {Centre for Analysis, Scientific computing and Applications (CASA), Dept.\ of Mathematics and Computer Science, Eindhoven University of Technology}, month = jul, year = 2011, number = {11-41}, note = {\url{http://www.win.tue.nl/analysis/reports/rana11-41.pdf}} }  [12] V. Carey and G. F. Carey. Flexible patch post-processing recovery strategies for solution enhancement and adaptive mesh refinement. International Journal for Numerical Methods in Engineering, 87(1-5):424-436, July 2011. http://dx.doi.org/10.1002/nme.3146. @article{Carey_2011, author = {V.~Carey and G.~F.~Carey}, title = {Flexible patch post-processing recovery strategies for solution enhancement and adaptive mesh refinement}, journal = {International Journal for Numerical Methods in Engineering}, volume = 87, number = {1--5}, pages = {424--436}, month = jul, note = {\url{http://dx.doi.org/10.1002/nme.3146}}, year = {2011} }  [13] A. Arbree, B. Walter, and K. Bala. Heterogeneous Subsurface Scattering Using the Finite Element Method. IEEE Transactions on Visualization and Computer Graphics, 17(7):956-969, July 2011. http://dx.doi.org/10.1109/TVCG.2010.117. @article{Arbree_2011, author = {A.~Arbree and B.~Walter and K.~Bala}, title = {{Heterogeneous Subsurface Scattering Using the Finite Element Method}}, journal = {IEEE Transactions on Visualization and Computer Graphics}, year = 2011, month = jul, volume = 17, number = 7, pages = {956--969}, note = {\url{http://dx.doi.org/10.1109/TVCG.2010.117}} }  [14] P. Bauman, J. Jagodzinski, and B. S. Kirk. Statistical calibration of thermocouple gauges used for inferring heat flux. In 42nd AIAA Thermophysics Conference, Fluid Dynamics and Co-located Conferences, June 27-30, 2011. http://dx.doi.org/10.2514/6.2011-3779. @inproceedings{Bauman_2011, author = {P.~Bauman and J.~Jagodzinski and B.~S.~Kirk}, title = {{Statistical calibration of thermocouple gauges used for inferring heat flux}}, booktitle = {{42nd AIAA Thermophysics Conference, Fluid Dynamics and Co-located Conferences}}, month = jun # {~27--30,}, year = {2011}, note = {\url{http://dx.doi.org/10.2514/6.2011-3779}} }  [15] S. W. Bova and B. S. Kirk. On the preservation of total enthalpy in SUPG methods. In 20th AIAA Computational Fluid Dynamics Conference, Honolulu, Hawaii, June 27-30, 2011. Paper AIAA-2011-3841. @inproceedings{Bova_2011, author = {S.~W.~Bova and B.~S.~Kirk}, title = {{On the preservation of total enthalpy in SUPG methods}}, booktitle = {{20th AIAA Computational Fluid Dynamics Conference, Honolulu, Hawaii}}, month = jun # {~27--30, }, year = {2011}, note = {Paper AIAA-2011-3841} }  [16] P. A. Vazquez and A. Castellanos. Stability analysis of the 3D electroconvective charged flow between parallel plates using the Particle-In-Cell method. In 2011 IEEE International Conference on Dielectric Liquids (ICDL), pages 1-4, June 26-30, 2011. http://dx.doi.org/10.1109/ICDL.2011.6015467. @inproceedings{Vazquez_2011, author = {P.~A.~Vazquez and A.~Castellanos}, booktitle = {{2011 IEEE International Conference on Dielectric Liquids (ICDL)}}, title = {{Stability analysis of the 3D electroconvective charged flow between parallel plates using the Particle-In-Cell method}}, year = {2011}, month = jun # {~26--30,}, pages = {1--4}, note = {\url{http://dx.doi.org/10.1109/ICDL.2011.6015467}} }  [17] D. P. Guillen, D. Gaston, and J. Tester. Multiphase flow modeling of biofuel production processes. Technical Report INL/CON-11-21680, Idaho National Laboratory, June 2011. http://www.inl.gov/technicalpublications/Documents/5148644.pdf. @techreport{Guillen_2011, author = {D.~P.~Guillen and D.~Gaston and J.~Tester}, title = {{Multiphase flow modeling of biofuel production processes}}, institution = {Idaho National Laboratory}, month = jun, year = 2011, number = {INL/CON-11-21680}, note = {\url{http://www.inl.gov/technicalpublications/Documents/5148644.pdf}} }  [18] A. Günther, H. Lamecker, and M. Weiser. Direct LDDMM of discrete currents with adaptive finite elements. Technical Report 11-22 (2011), Konrad-Zuse-Zentrum für Informationstechnik Berlin (ZIB), June 2011. http://vs24.kobv.de/opus4-zib/files/1309/ZIB-Report11-22_GLW-LDDMMwithAFEM.pdf. @techreport{Gunther_2011, author = {A.~G\"{u}nther and H.~Lamecker and M.~Weiser}, title = {{Direct LDDMM of discrete currents with adaptive finite elements}}, institution = {Konrad-Zuse-Zentrum f\"{u}r Informationstechnik Berlin (ZIB)}, day = 14, month = jun, year = 2011, number = {11-22 (2011)}, note = {\url{http://vs24.kobv.de/opus4-zib/files/1309/ZIB-Report11-22_GLW-LDDMMwithAFEM.pdf}} }  [19] J. W. Peterson and G. F. Carey. Parallel adaptive solution of coupled Rayleigh-Bénard-Marangoni problems with Navier-slip. International Journal for Numerical Methods in Fluids, 66(4):428-451, June 2011. http://dx.doi.org/10.1002/fld.2264. @article{Peterson_2010b, author = {J.~W.~Peterson and G.~F.~Carey}, title = {{Parallel adaptive solution of coupled Rayleigh--B\'{e}nard--Marangoni problems with Navier-slip}}, journal = {International Journal for Numerical Methods in Fluids}, volume = 66, number = 4, pages = {428--451}, month = jun, year = {2011}, note = {\url{http://dx.doi.org/10.1002/fld.2264}} }  [20] Y. Feng and D. Fuentes. Real-time predictive surgical control for cancer treatment using laser ablation. IEEE Signal Processing Magazine, 28(3):134-138, May 2011. http://dx.doi.org/10.1109/MSP.2011.940419. @article{Feng_2011, author = {Y.~Feng and D.~Fuentes}, title = {{Real-time predictive surgical control for cancer treatment using laser ablation}}, journal = {IEEE Signal Processing Magazine}, year = 2011, volume = 28, number = 3, month = may, pages = {134--138}, note = {\url{http://dx.doi.org/10.1109/MSP.2011.940419}} }  [21] M. Auf der Maur, G. Penazzi, G. Romano, F. Sacconi, A. Pecchia, and A. Di Carlo. The multiscale paradigm in electronic device simulation. IEEE Transactions on Electron Devices, 58(5):1425-1432, May 2011. http://dx.doi.org/10.1109/TED.2011.2114666. @article{AufDerMaur_2011, author = {Auf der Maur, M. and Penazzi, G. and Romano, G. and Sacconi, F. and Pecchia, A. and Di Carlo, A.}, journal = {IEEE Transactions on Electron Devices}, title = {The Multiscale Paradigm in Electronic Device Simulation}, year = {2011}, month = may, volume = {58}, number = {5}, pages = {1425--1432}, note = {\url{http://dx.doi.org/10.1109/TED.2011.2114666}} }  [22] F. E. Curtis, J. Huber, O. Schenk, and A. Wächter. On the implementation of an interior-point algorithm for nonlinear optimization with inexact step computations. Technical Report RC25143 (W1104-052), IBM Research Division, April 2011. http://lehigh.edu/ise/documents/11t_005.pdf. @techreport{Curtis_2011a, author = {F.~E.~Curtis and J.~Huber and O.~Schenk and A.~W\"{a}chter}, title = {{On the implementation of an interior-point algorithm for nonlinear optimization with inexact step computations}}, institution = {IBM Research Division}, day = {13}, month = apr, year = 2011, number = {RC25143 (W1104-052)}, note = {\url{http://lehigh.edu/ise/documents/11t_005.pdf}} }  [23] D. B. P. Huynh, D. J. Knezevic, J. W. Peterson, and A. T. Patera. High-Fidelity Real-Time Simulation on Deployed Platforms. Computers & Fluids, 43(1):74-81, April 2011. Special issue dedicated to Prof. Michel Deville, Symposium on High Accuracy Flow Simulations (HAFS), École Polytechnique Fédérale de Lausanne, February 15-16, 2010, DOI: http://dx.doi.org/10.1016/j.compfluid.2010.07.007. @article{Huynh_2010, author = {D.~B.~P.~Huynh and D.~J.~Knezevic and J.~W.~Peterson and A.~T.~Patera}, title = {{High-Fidelity Real-Time Simulation on Deployed Platforms}}, journal = {Computers \& Fluids}, year = {2011}, month = apr, volume = 43, number = 1, pages = {74--81}, note = {Special issue dedicated to Prof. Michel Deville, Symposium on High Accuracy Flow Simulations (HAFS), \'{E}cole Polytechnique F\'{e}d\'{e}rale de Lausanne, February 15--16, 2010, DOI:~\url{http://dx.doi.org/10.1016/j.compfluid.2010.07.007} } }  [24] D. J. Knezevic and J. W. Peterson. A High-Performance Parallel Implementation of the Certified Reduced Basis Method. Comput. Meth. Appl. Mech. Eng., 200(13-16):1455-1466, March 2011. http://dx.doi.org/10.1016/j.cma.2010.12.026. @article{Knezevic_2011, author = {D.~J.~Knezevic and J.~W.~Peterson}, title = {{A High-Performance Parallel Implementation of the Certified Reduced Basis Method}}, journal = {Comput. Meth. Appl. Mech. Eng.}, year = {2011}, pages = {1455--1466}, volume = 200, number = {13--16}, month = mar, note = {\url{http://dx.doi.org/10.1016/j.cma.2010.12.026}} }  [25] L. Botti and D. A. Di Pietro. A pressure-correction scheme for convection-dominated incompressible flows with discontinuous velocity and continuous pressure. Journal of Computational Physics, 230(3):572-585, February 2011. http://dx.doi.org/10.1016/j.jcp.2010.10.004. @article{Botti_2011, author = {L.~Botti and D.~A.~Di Pietro}, title = {{A pressure-correction scheme for convection-dominated incompressible flows with discontinuous velocity and continuous pressure}}, journal = {Journal of Computational Physics}, year = 2011, volume = 230, number = 3, month = feb, pages = {572--585}, note = {\url{http://dx.doi.org/10.1016/j.jcp.2010.10.004}} }  [26] B. S. Kirk, S. W. Bova, and R. B. Bond. A streamline-upwind Petrov-Galerkin finite element scheme for non-ionized hypersonic flows in thermochemical nonequilibrium. In 49th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition, January 4-7, 2011. http://arc.aiaa.org/doi/abs/10.2514/6.2011-134. @inproceedings{Kirk_2011, author = {B.~S.~Kirk and S.~W.~Bova and R.~B.~Bond}, title = {{A streamline-upwind Petrov-Galerkin finite element scheme for non-ionized hypersonic flows in thermochemical nonequilibrium}}, booktitle = {{49th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition}}, month = jan # {~4--7,}, year = {2011}, note = {\url{http://arc.aiaa.org/doi/abs/10.2514/6.2011-134}} }  [27] A. J. Amar, N. D. Calvert, and B. S. Kirk. Development and verification of the charring ablating thermal protection implicit system solver. In 49th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition, January 4-7, 2011. http://arc.aiaa.org/doi/abs/10.2514/6.2011-144. @inproceedings{Amar_2011, author = {A.~J.~Amar and N.~D.~Calvert and B.~S.~Kirk}, title = {{Development and verification of the charring ablating thermal protection implicit system solver}}, booktitle = {{49th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition}}, month = jan # {~4--7,}, year = {2011}, note = {\url{http://arc.aiaa.org/doi/abs/10.2514/6.2011-144}} }  [28] J. Montagnier, M. Buffat, and D. Guibert. Parallel computation of pollutant dispersion in industrial sites. In D. Tromeur-Dervout, G. Brenner, D. R. Emerson, and J. Erhel, editors, Parallel Computational Fluid Dynamics 2008, volume 74 of Lecture Notes in Computational Science and Engineering, pages 399-406. Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-14438-7_42. @incollection{Montagnier_2011, author = {J.~Montagnier and M.~Buffat and D.~Guibert}, title = {{Parallel computation of pollutant dispersion in industrial sites}}, pages = {399--406}, year = {2011}, publisher = {Springer Berlin Heidelberg}, booktitle = {Parallel Computational Fluid Dynamics 2008}, volume = {74}, series = {Lecture Notes in Computational Science and Engineering}, editor = {D.~Tromeur-Dervout and G.~Brenner and D.~R.~Emerson and J.~Erhel}, note = {\url{http://dx.doi.org/10.1007/978-3-642-14438-7_42}} }  [29] M. J. Grote, J. Huber, and O. Schenk. Interior point methods for the inverse medium problem on massively parallel architectures. Procedia Computer Science, 4:1466-1474, 2011. Proceedings of the International Conference on Computational Science (ICCS 2011), http://dx.doi.org/10.1016/j.procs.2011.04.159. @article{Grote_2011, author = {M.~J.~Grote and J.~Huber and O.~Schenk}, title = {{Interior point methods for the inverse medium problem on massively parallel architectures}}, journal = {Procedia Computer Science}, year = 2011, volume = 4, pages = {1466--1474}, note = {Proceedings of the International Conference on Computational Science (ICCS 2011), \url{http://dx.doi.org/10.1016/j.procs.2011.04.159}} }  [30] D. J. Knezevic, N. C. Nguyen, and A. T. Patera. Reduced basis approximation and a posteriori error estimation for the parametrized unsteady Boussinesq equations. Mathematical Models and Methods in Applied Sciences, 21(7):1415-1442, 2011. http://dx.doi.org/10.1142/S0218202511005441. @article{Knezevic_2011b, author = {D.~J.~Knezevic and N.~C.~Nguyen and A.~T.~Patera}, title = {{Reduced basis approximation and a posteriori error estimation for the parametrized unsteady Boussinesq equations}}, journal = {Mathematical Models and Methods in Applied Sciences}, year = 2011, volume = 21, number = 7, pages = {1415--1442}, note = {\url{http://dx.doi.org/10.1142/S0218202511005441}} }  [31] T. Kröger. Numerical experiments on existence and non-uniqueness of solutions of the thermistor problem with Helmholtz term. AIP Conference Proceedings, 1368(1):37-40, 2011. http://dx.doi.org/10.1063/1.3663454. @article{Kroger_2011, author = {T.~Kr\"{o}ger}, editor = {Ilias Kotsireas and Roderick Melnik and Brian West}, title = {{Numerical experiments on existence and non-uniqueness of solutions of the thermistor problem with Helmholtz term}}, publisher = {AIP}, year = {2011}, journal = {AIP Conference Proceedings}, volume = {1368}, number = {1}, pages = {37--40}, note = {\url{http://dx.doi.org/10.1063/1.3663454}} }  [32] J. L. Eftang, D. J. Knezevic, and A. T. Patera. An hp certified reduced basis method for parameterized parabolic partial differential equations. Mathematical and Computer Modelling of Dynamical Systems, Special Issue: Model order reduction of parameterized problems, 17(4):395-422, 2011. http://dx.doi.org/10.1080/13873954.2011.547670. @article{Eftang_2011, author = {J.~L.~Eftang and D.~J.~Knezevic and A.~T.~Patera}, title = {{An $hp$ certified reduced basis method for parameterized parabolic partial differential equations}}, journal = {Mathematical and Computer Modelling of Dynamical Systems, Special Issue: Model order reduction of parameterized problems}, volume = 17, number = 4, pages = {395--422}, year = 2011, note = {\url{http://dx.doi.org/10.1080/13873954.2011.547670}} }  [33] S. Steiger, M. Povolotskyi, H.-H. Park, T. Kubis, and G. Klimeck. NEMO5: A parallel multiscale nanoelectronics modeling tool. IEEE Transactions on Nanotechnology, 10(6):1464-1474, 2011. http://dx.doi.org/10.1109/TNANO.2011.2166164. @article{Steiger_2011, author = {S.~Steiger and M.~Povolotskyi and H.-H.~Park and T.~Kubis and G.~Klimeck}, title = {{NEMO5: A parallel multiscale nanoelectronics modeling tool}}, journal = {IEEE Transactions on Nanotechnology}, year = 2011, volume = 10, number = 6, pages = {1464--1474}, note = {\url{http://dx.doi.org/10.1109/TNANO.2011.2166164}} }  [34] D. Fuentes, C. Walker, A. Elliott, A. Shetty, J. D. Hazle, and R. J. Stafford. Magnetic resonance temperature imaging validation of a bioheat transfer model for laser-induced thermal therapy. Int. J. of Hyperthermia, 27(5):453-464, 2011. http://dx.doi.org/10.3109/02656736.2011.557028. @article{Fuentes_2011, author = {D.~Fuentes and C.~Walker and A.~Elliott and A.~Shetty and J.~D.~Hazle and R.~J.~Stafford}, title = {{Magnetic resonance temperature imaging validation of a bioheat transfer model for laser-induced thermal therapy}}, journal = {Int.~J.~of Hyperthermia}, year = 2011, volume = 27, number = 5, pages = {453--464}, note = {\url{http://dx.doi.org/10.3109/02656736.2011.557028}} }  [35] R. P. Widmer and S. J. Ferguson. A mixed boundary representation to simulate the displacement of a biofluid by a biomaterial in porous media. Journal of Biomechanical Engineering, 133(5):051007, 2011. http://dx.doi.org/10.1115/1.4003735. @article{widmer_2011, author = {R.~P.~Widmer and S.~J.~Ferguson}, title = {A Mixed Boundary Representation to Simulate the Displacement of a Biofluid by a Biomaterial in Porous Media}, year = {2011}, journal = {Journal of Biomechanical Engineering}, volume = {133}, number = {5}, numpages = {12}, pages = {051007}, note = {\url{http://dx.doi.org/10.1115/1.4003735}} }  [36] A. Corsini, F. Rispoli, and T. E. Tezduyar. Stabilized finite element computation of NOx emission in aero-engine combustors. International Journal for Numerical Methods in Fluids, 65(1-3):254-270, January 2011. http://dx.doi.org/10.1002/fld.2451. @article{Corsini_2011, author = {A.~Corsini and F.~Rispoli and T.~E.~Tezduyar}, title = {{Stabilized finite element computation of NOx emission in aero-engine combustors}}, journal = {International Journal for Numerical Methods in Fluids}, year = 2011, volume = 65, number = {1--3}, pages = {254--270}, month = jan, note = {\url{http://dx.doi.org/10.1002/fld.2451}} } 

## 2010

 [1] M. Burtscher, B.-D. Kim, J. Diamond, J. McCalpin, L. Koesterke, and J. Browne. PerfExpert: An easy-to-use performance diagnosis tool for HPC applications. In 2010 International Conference for High Performance Computing, Networking, Storage and Analysis (SC), pages 1-11, November 13-19, 2010. http://dx.doi.org/10.1109/SC.2010.41. @inproceedings{Burtscher_2010b, author = {M.~Burtscher and B.-D.~Kim and J.~Diamond and J.~McCalpin and L.~Koesterke and J.~Browne}, booktitle = {2010 International Conference for High Performance Computing, Networking, Storage and Analysis (SC)}, title = {{PerfExpert: An easy-to-use performance diagnosis tool for HPC applications}}, year = {2010}, month = nov # {~13--19,}, pages = {1--11}, note = {\url{http://dx.doi.org/10.1109/SC.2010.41}} }  [2] B. S. Kirk. Adiabatic shock capturing in perfect gas hypersonic flows. International Journal for Numerical Methods in Fluids, 64(9):1041-1062, November 2010. http://dx.doi.org/10.1002/fld.2195. @article{Kirk_2010b, author = {B.~S.~Kirk}, title = {{Adiabatic shock capturing in perfect gas hypersonic flows}}, journal = {International Journal for Numerical Methods in Fluids}, year = 2010, month = nov, volume = 64, number = 9, pages = {1041--1062}, note = {\url{http://dx.doi.org/10.1002/fld.2195}} }  [3] D. Fuentes, R. Cardan, R. J. Stafford, J. Yung, G. D. Dodd III, and Y. Feng. High-fidelity computer models for prospective treatment planning of radiofrequency ablation with in vitro experimental correlation. Journal of Vascular and Interventional Radiology, 21(11):1725-1732, November 2010. http://dx.doi.org/10.1016/j.jvir.2010.07.022. @article{Fuentes_2010b, author = {D.~Fuentes and R.~Cardan and R.~J.~Stafford and J.~Yung and G.~D.~{Dodd III} and Y.~Feng}, title = {High-fidelity Computer Models for Prospective Treatment Planning of Radiofrequency Ablation with In Vitro Experimental Correlation}, journal = {Journal of Vascular and Interventional Radiology}, volume = 21, number = 11, month = nov, year = {2010}, pages = {1725--1732}, note = {\url{http://dx.doi.org/10.1016/j.jvir.2010.07.022}} }  [4] L. Nagler and M. Schanz. An extendable poroelastic plate formulation in dynamics. Archive of Applied Mechanics, 80:1177-1195, October 2010. http://dx.doi.org/10.1007/s00419-010-0429-4. @article{Nagler_2010, author = {L.~Nagler and M.~Schanz}, title = {{An extendable poroelastic plate formulation in dynamics}}, journal = {Archive of Applied Mechanics}, year = 2010, volume = 80, issue = 10, month = oct, pages = {1177--1195}, note = {\url{http://dx.doi.org/10.1007/s00419-010-0429-4}} }  [5] J. Brown. Efficient Nonlinear Solvers for Nodal High-Order Finite Elements in 3D. Journal of Scientific Computing, 45:48-63, October 2010. http://dx.doi.org/10.1007/s10915-010-9396-8. @article{Brown_2010, author = {J.~Brown}, title = {{Efficient Nonlinear Solvers for Nodal High-Order Finite Elements in 3D}}, journal = {Journal of Scientific Computing}, year = 2010, volume = 45, issue = {1--3}, month = oct, pages = {48--63}, note = {\url{http://dx.doi.org/10.1007/s10915-010-9396-8}} }  [6] S. Wang, E. De Sturler, and G. H. Paulino. Dynamic adaptive mesh refinement for topology optimization. ArXiv e-prints, September 25, 2010. http://arxiv.org/abs/1009.4975. @article{Wang_2010, author = {S.~Wang and E.~De~Sturler and G.~H.~Paulino}, title = {{Dynamic adaptive mesh refinement for topology optimization}}, month = sep # {~25,}, year = {2010}, journal = {ArXiv e-prints}, note = {\url{http://arxiv.org/abs/1009.4975}} }  [7] S. Oliveira, A.-M. Toader, and P. Vieira. Finding the elastic coefficients of a damaged zone in a concrete dam using material optimization to fit measured modal parameters. In Proceedings of the 2nd International Conference on Engineering Optimization, Lisbon, Portugal, September 6-9, 2010. http://lemac1.dem.ist.utl.pt/engopt2010/Book_and_CD/Papers_CD_Final_Version/pdf/12/01122-01.pdf. @inproceedings{Olivera_2010, author = {S.~Oliveira and A.-M.~Toader and P.~Vieira}, title = {Finding the elastic coefficients of a damaged zone in a concrete dam using material optimization to fit measured modal parameters}, booktitle = {{Proceedings of the 2nd International Conference on Engineering Optimization}}, month = sep # {~6--9,}, address = {Lisbon, Portugal}, year = {2010}, note = {\url{http://lemac1.dem.ist.utl.pt/engopt2010/Book_and_CD/ Papers_CD_Final_Version/pdf/12/01122-01.pdf}} }  [8] J. Ragusa, A. Siegel, and J.-M. Ruggieri. Neutronic/Thermalhydraulic Coupling Techniques for Sodium Cooled Fast Reactor Simulations. Technical Report 14837, Department of Energy, September 2010. http://dx.doi.org/10.2172/992636. @techreport{Ragusa_2010, author = {J.~Ragusa and A.~Siegel and J.-M.~Ruggieri}, title = {{Neutronic/Thermalhydraulic Coupling Techniques for Sodium Cooled Fast Reactor Simulations}}, institution = {Department of Energy}, day = 28, month = sep, year = {2010}, number = {14837}, note = {\url{http://dx.doi.org/10.2172/992636}} }  [9] Y. Lu, B. Zhu, H. Shen, J. C. Rasmussen, G. Wang, and E. M. Sevick-Muraca. A parallel adaptive finite element simplified spherical harmonics approximation solver for frequency domain fluorescence molecular imaging. Physics in Medicine and Biology, 55(16):4625-4645, August 2010. http://dx.doi.org/10.1088/0031-9155/55/16/002. @article{Lu_2010, author = {Y.~Lu and B.~Zhu and H.~Shen and J.~C.~Rasmussen and G.~Wang and E.~M.~Sevick-Muraca}, title = {{A parallel adaptive finite element simplified spherical harmonics approximation solver for frequency domain fluorescence molecular imaging}}, journal = {Physics in Medicine and Biology}, year = 2010, volume = 55, number = 16, month = aug, pages = {4625--4645}, note = {\url{http://dx.doi.org/10.1088/0031-9155/55/16/002}} }  [10] F. H. Pereira and S. I. Nabeta. Wavelet-based algebraic multigrid method using the lifting technique. Journal of Microwaves, Optoelectronics, and Electromagnetic Applications, 9(1):1-9, June 2010. http://www.sel.eesc.usp.br/jmo/issues/vol_9/v9_n1/v9_n1_paper_pdf/regular/v9n1a1.pdf. @article{Pereira_2010, author = {F.~H.~Pereira and S.~I.~Nabeta}, title = {{Wavelet-based algebraic multigrid method using the lifting technique}}, journal = {Journal of Microwaves, Optoelectronics, and Electromagnetic Applications}, year = 2010, volume = 9, number = 1, pages = {1--9}, note = {\url{http://www.sel.eesc.usp.br/jmo/issues/ vol_9/v9_n1/v9_n1_paper_pdf/regular/v9n1a1.pdf}}, month = jun }  [11] B. S. Kirk and G. F. Carey. Validation of Fully Implicit, Parallel Finite Element Simulations of Laminar Hypersonic Flows. AIAA Journal, 48(6):1025-1036, June 2010. http://dx.doi.org/10.2514/1.40860. @article{Kirk_2010a, author = {B.~S.~Kirk and G.~F.~Carey}, title = {{Validation of Fully Implicit, Parallel Finite Element Simulations of Laminar Hypersonic Flows}}, journal = {AIAA Journal}, year = 2010, month = jun, volume = 48, number = 6, pages = {1025--1036}, note = {\url{http://dx.doi.org/10.2514/1.40860}} }  [12] A. Pecchia. Transport at the nanoscale: integration of micro-macro scales for electrothermal device simulations. Technical Report A029035, Grant No: FA8655-08-1-3017, University of Rome, “Tor Vergata”, May 2010. http://www.dtic.mil/cgi-bin/GetTRDoc?Location=U2&doc=GetTRDoc.pdf&AD=ADA530920, http://dodreports.com/pdf/ada530920.pdf. @techreport{Pecchia_2010, author = {A.~Pecchia}, title = {{Transport at the nanoscale: integration of micro-macro scales for electrothermal device simulations}}, institution = {University of Rome, Tor Vergata''}, day = 27, month = may, year = {2010}, number = {A029035, Grant No: FA8655-08-1-3017}, note = {\url{http://www.dtic.mil/cgi-bin/GetTRDoc? Location=U2&doc=GetTRDoc.pdf&AD=ADA530920}, \url{http://dodreports.com/pdf/ada530920.pdf}} }  [13] D. Fuentes, Y. Feng, A. Elliott, A. Shetty, R. J. McNichols, J. T. Oden, and R. J. Stafford. Adaptive Real-Time Bioheat Transfer Models for Computer Driven MR-guided Laser Induced Thermal Therapy. IEEE Trans. Biomed. Eng., 57(5):1024-1030, May 2010. http://www.ncbi.nlm.nih.gov/pubmed/20142153. @article{Fuentes_2010a, author = {D.~Fuentes and Y.~Feng and A.~Elliott and A.~Shetty and R.~J.~McNichols and J.~T.~Oden and R.~J.~Stafford}, title = {{Adaptive Real-Time Bioheat Transfer Models for Computer Driven MR-guided Laser Induced Thermal Therapy}}, journal = {{IEEE Trans. Biomed. Eng.}}, year = {2010}, volume = {57}, number = {5}, month = may, pages = {1024--1030}, note = {\url{http://www.ncbi.nlm.nih.gov/pubmed/20142153}} }  [14] S. Berrone. Skipping transition conditions in a posteriori error estimates for finite element discretizations of parabolic equations. Mathematical Modelling and Numerical Analysis (M2AN), 44(3):455-484, May 2010. http://dx.doi.org/10.1051/m2an/2010009. @article{Berrone_2010a, author = {S.~Berrone}, title = {{Skipping transition conditions in a posteriori error estimates for finite element discretizations of parabolic equations}}, journal = {Mathematical Modelling and Numerical Analysis (M2AN)}, month = may, year = 2010, volume = 44, number = 3, pages = {455--484}, note = {\url{http://dx.doi.org/10.1051/m2an/2010009}} }  [15] Y. Zhu, X. Y. Luo, and R. W. Ogden. Nonlinear axisymmetric deformations of an elastic tube under external pressure. European Journal of Mechanics - A/Solids, 29(2):216-229, March-April 2010. http://dx.doi.org/10.1016/j.euromechsol.2009.10.004. @article{Zhu_2010, author = {Y.~Zhu and X.~Y.~Luo and R.~W.~Ogden}, title = {{Nonlinear axisymmetric deformations of an elastic tube under external pressure}}, journal = {European Journal of Mechanics - A/Solids}, year = 2010, volume = 29, number = 2, month = {March--April}, pages = {216--229}, note = {\url{http://dx.doi.org/10.1016/j.euromechsol.2009.10.004}} }  [16] M. Burtscher, B. Kim, J. Diamond, J. McCalpin, L. Koesterke, and J. Browne. PerfExpert: An automated HPC performance measurement and analysis tool with optimization recommendations. Technical Report 10-04, Institute for Computational Engineering and Sciences (ICES), February 2010. http://www.ices.utexas.edu/media/reports/2010/1004.pdf. @techreport{Burtscher_2010, author = {M.~Burtscher and B.~Kim and J.~Diamond and J.~McCalpin and L.~Koesterke and J.~Browne}, title = {{PerfExpert: An automated HPC performance measurement and analysis tool with optimization recommendations}}, institution = {Institute for Computational Engineering and Sciences (ICES)}, month = feb, year = 2010, number = {10-04}, note = {\url{http://www.ices.utexas.edu/media/reports/2010/1004.pdf}} }  [17] R. Podgorney, H. Huang, and D. Gaston. Massively parallel fully coupled implicit modeling of coupled thermal-hydrological-mechanical processes for enhanced geothermal system reservoirs. In Proceedings of the 35th Workshop on Geothermal Reservoir Engineering. Stanford University, February 2010. http://pangea.stanford.edu/ERE/pdf/IGAstandard/SGW/2010/podgorne.pdf. @inproceedings{Podgorney_2010, author = {R.~Podgorney and H.~Huang and D.~Gaston}, title = {{Massively parallel fully coupled implicit modeling of coupled thermal-hydrological-mechanical processes for enhanced geothermal system reservoirs}}, booktitle = {{Proceedings of the 35th Workshop on Geothermal Reservoir Engineering}}, publisher = {Stanford University}, month = feb, year = {2010}, note = {\url{http://pangea.stanford.edu/ERE/pdf/IGAstandard/SGW/2010/podgorne.pdf}} }  [18] M. Tonks, D. Gaston, C. Permann, P. Millett, G. Hansen, and D. Wolf. A coupling methodology for mesoscale-informed nuclear fuel performance codes. Nuclear Engineering and Design, 240(10):2877-2883, 2010. http://dx.doi.org/10.1016/j.nucengdes.2010.06.005. @article{Tonks_2010, author = {M.~Tonks and D.~Gaston and C.~Permann and P.~Millett and G.~Hansen and D.~Wolf}, title = {{A coupling methodology for mesoscale-informed nuclear fuel performance codes}}, journal = {Nuclear Engineering and Design}, year = 2010, volume = 240, number = 10, pages = {2877--2883}, note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2010.06.005}} }  [19] A. L. Rossa, J. J. Camata, and A. L. G. A. Coutinho. Hourglass control for the stabilized finite element solution of coupled incompressible viscous flows and heat transfer. Mecánica Computacional - High Performance Computing in Computational Mechanics (B), XXIX(31):3169-3184, 2010. http://www.amcaonline.org.ar/ojs/index.php/mc/article/view/3225. @article{Rossa_2010, author = {A.~L.~Rossa and J.~J.~Camata and A.~L.~G.~A.~Coutinho}, title = {{Hourglass control for the stabilized finite element solution of coupled incompressible viscous flows and heat transfer}}, journal = {Mec\'{a}nica Computacional -- High Performance Computing in Computational Mechanics (B)}, year = 2010, volume = {XXIX}, number = 31, pages = {3169--3184}, note = {\url{http://www.amcaonline.org.ar/ojs/index.php/mc/article/view/3225}} }  [20] D. J. Knezevic and A. T. Patera. A certified reduced basis method for the Fokker-Planck equation of dilute polymeric fluids: FENE dumbbells in extensional flow. SIAM Journal on Scientific Computing, 32(2):793-817, 2010. http://dx.doi.org/10.1137/090759239. @article{Knezevic_2010a, author = {D.~J.~Knezevic and A.~T.~Patera}, title = {{A certified reduced basis method for the Fokker-Planck equation of dilute polymeric fluids: FENE dumbbells in extensional flow}}, journal = {SIAM Journal on Scientific Computing}, year = 2010, volume = 32, number = 2, pages = {793--817}, note = {\url{http://dx.doi.org/10.1137/090759239}} }  [21] Z. Ren and J. Tang. 3D direct current resistivity modeling with unstructured mesh by adaptive finite-element method. Geophysics, 1(75):H7-H17, 2010. http://dx.doi.org/10.1190/1.3298690. @article{Zhengyong_2010, author = {Z.~Ren and J.~Tang}, title = {{3D direct current resistivity modeling with unstructured mesh by adaptive finite-element method}}, journal = {Geophysics}, year = 2010, volume = 1, number = 75, pages = {H7--H17}, note = {\url{http://dx.doi.org/10.1190/1.3298690}} }  [22] G. F. Carey and D. J. Knezevic. Multiscale and hysteresis effects in vortex pattern simulations for Ginzburg-Landau problems. International Journal for Numerical Methods in Engineering, 81(7):866-891, 2010. http://dx.doi.org/10.1002/nme.2714. @article{Carey_2010, author = {G.~F.~Carey and D.~J.~Knezevic}, title = {{Multiscale and hysteresis effects in vortex pattern simulations for Ginzburg-Landau problems}}, journal = {International Journal for Numerical Methods in Engineering}, year = 2010, volume = 81, number = 7, pages = {866--891}, note = {\url{http://dx.doi.org/10.1002/nme.2714}} }  [23] J. W. Peterson, G. F. Carey, and B. T. Murray. Multi-Resolution Simulation of Double-Diffusive Convection in Porous Media. International Journal of Numerical Methods for Heat & Fluid Flow, 20(1):37-65, 2010. http://dx.doi.org/10.1108/09615531011008118. @article{Peterson_2010, author = {J.~W.~Peterson and G.~F.~Carey and B.~T.~Murray}, title = {{Multi-Resolution Simulation of Double-Diffusive Convection in Porous Media}}, journal = {International Journal of Numerical Methods for Heat \& Fluid Flow}, volume = 20, number = 1, year = {2010}, pages = {37--65}, note = {\url{http://dx.doi.org/10.1108/09615531011008118}} }  [24] L. Botti, M. Piccinelli, B. Ene-Iordache, A. Remuzzi, and L. Antiga. An adaptive mesh refinement solver for large-scale simulation of biological flows. International Journal for Numerical Methods in Biomedical Engineering, 26(1):86-100, 2010. http://dx.doi.org/10.1002/cnm.1257. @article{Botti_2010, author = {L.~Botti and M.~Piccinelli and B.~Ene-Iordache and A.~Remuzzi and L.~Antiga}, title = {{An adaptive mesh refinement solver for large-scale simulation of biological flows}}, journal = {International Journal for Numerical Methods in Biomedical Engineering}, year = 2010, volume = 26, number = 1, pages = {86--100}, note = {\url{http://dx.doi.org/10.1002/cnm.1257}} } 

## 2009

 [1] P. Prouzet, M. Odunlami, E. Duquesne, and A. Boussouar. Analysis and visualization of the glass eel behavior (Anguilla anguilla) in the Adour estuary and estimate of its upstream migration speed. Aquatic Living Resources, 22(4):525-534, December 2009. http://dx.doi.org/10.1051/alr/2009041. @article{Prouet_2009, author = {P.~Prouzet and M.~Odunlami and E.~Duquesne and A.~Boussouar}, title = {{Analysis and visualization of the glass eel behavior (Anguilla anguilla) in the Adour estuary and estimate of its upstream migration speed}}, note = {\url{http://dx.doi.org/10.1051/alr/2009041}}, journal = {Aquatic Living Resources}, year = 2009, volume = 22, number = 4, pages = {525--534}, month = dec }  [2] H. Class et al. A benchmark study on problems related to CO2 storage in geologic formations. Computational Geosciences, 13(4):409-434, December 2009. http://dx.doi.org/10.1007/s10596-009-9146-x. @article{Class_2009, author = {H.~Class and others}, title = {{A benchmark study on problems related to CO2 storage in geologic formations}}, journal = {Computational Geosciences}, year = 2009, volume = 13, number = 4, pages = {409--434}, month = dec, note = {\url{http://dx.doi.org/10.1007/s10596-009-9146-x}} }  [3] C. Barbarosie and A.-M. Toader. Optimization of bodies with locally periodic microstructure. Technical Report Pre-2009-021, Centro de Matemática e Aplicações Fundamentais (CMAF), December 2009. http://cmaf.ptmat.fc.ul.pt/arquivo/docs/pre-2009-021.pdf. @techreport{Barbarosie_2009, author = {C.~Barbarosie and A.-M.~Toader}, title = {{Optimization of bodies with locally periodic microstructure}}, institution = {Centro de Matem\'{a}tica e Aplica\c{c}\~{o}es Fundamentais (CMAF)}, number = {Pre-2009-021}, day = {2}, month = dec, year = {2009}, note = {\url{http://cmaf.ptmat.fc.ul.pt/arquivo/docs/pre-2009-021.pdf}} }  [4] B. S. Kirk and G. F. Carey. A parallel, adaptive finite element scheme for modeling chemotactic biological systems. Communications in Numerical Methods in Engineering, 25(12):1162-1185, December 2009. http://dx.doi.org/10.1002/cnm.1173. @article{Kirk_2009c, author = {B.~S.~Kirk and G.~F.~Carey}, title = {{A parallel, adaptive finite element scheme for modeling chemotactic biological systems}}, journal = {Communications in Numerical Methods in Engineering}, volume = {25}, number = {12}, pages = {1162--1185}, month = dec, year = {2009}, note = {\url{http://dx.doi.org/10.1002/cnm.1173}} }  [5] D. J. Knezevic and E. Süli. A heterogeneous alternating-direction method for a micro-macro dilute polymeric fluid model. European Series in Applied and Industrial Mathematics: Mathematical Modelling and Numerical Analysis, 43(6):1117-1156, November 2009. http://dx.doi.org/10.1051/m2an/2009034. @article{Knezevic_2009d, author = {D.~J.~Knezevic and E.~S\"{u}li}, title = {{A heterogeneous alternating-direction method for a micro-macro dilute polymeric fluid model}}, note = {\url{http://dx.doi.org/10.1051/m2an/2009034}}, journal = {European Series in Applied and Industrial Mathematics: Mathematical Modelling and Numerical Analysis}, year = 2009, volume = 43, number = 6, pages = {1117--1156}, month = nov }  [6] L. Antiga, R. N. Planken, K. Van Canneyt, L. Botti, A. Caroli, B. Ene-Iordache, J. Tordoir, P. Verdonck, and A. Remuzzi. Non-linear resistance associated to complex geometry at high flow rates in vascular access for hemodialysis. In Olaf Dössel and Wolfgang C. Schlegel, editors, World Congress on Medical Physics and Biomedical Engineering, pages 543-546, Munich, Germany, September 7-12, 2009. Springer Berlin Heidelberg. http://dx.doi.org/10.1007/978-3-642-03885-3. @inproceedings{Antiga_2009, author = {L. Antiga and R. N. Planken and K. Van Canneyt and L. Botti and A. Caroli and B. Ene-Iordache and J. Tordoir and P. Verdonck and A. Remuzzi}, title = {{Non-linear resistance associated to complex geometry at high flow rates in vascular access for hemodialysis}}, booktitle = {{World Congress on Medical Physics and Biomedical Engineering}}, editor = {Olaf D\"{o}ssel and Wolfgang C. Schlegel}, pages = {543--546}, publisher = {Springer Berlin Heidelberg}, month = sep # {~7--12,}, address = {Munich, Germany}, year = {2009}, note = {\url{http://dx.doi.org/10.1007/978-3-642-03885-3}} }  [7] M. F. Barone, I. Kalashnikova, M. R. Brake, and D. J. Segalman. Reduced order modeling of fluid/structure interaction. Technical Report SAND2009-7189, Sandia National Laboratories, September 2009. http://www.stanford.edu/~irinak/rom_ldrd_sand.pdf. @techreport{Barone_2009b, author = {M.~F.~Barone and I.~Kalashnikova and M.~R.~Brake and D.~J.~Segalman}, title = {{Reduced order modeling of fluid/structure interaction}}, institution = {Sandia National Laboratories}, month = sep, year = {2009}, number = {SAND2009-7189}, note = {\url{http://www.stanford.edu/~irinak/rom_ldrd_sand.pdf}} }  [8] Y. Lu and A. F. Chatziioannou. A parallel adaptive finite element method for the simulation of photon migration with the radiative-transfer-based model. Communications in Numerical Methods in Engineering, 25(6):751-770, June 2009. http://dx.doi.org/10.1002/cnm.1167. @article{Lu_2009b, author = {Y.~Lu and A.~F.~Chatziioannou}, title = {{A parallel adaptive finite element method for the simulation of photon migration with the radiative-transfer-based model}}, journal = {Communications in Numerical Methods in Engineering}, month = jun, year = 2009, volume = 25, number = 6, pages = {751--770}, note = {\url{http://dx.doi.org/10.1002/cnm.1167}} }  [9] M. Auf der Maur, M. Povolotskyi, F. Sacconi, G. Romano, G. Penazzi, A. Pecchia, and A. Di Carlo. Multiscale-multiphysics simulation of nanostructured devices: the TiberCAD project. In 13th International Workshop on Computational Electronics (IWCE '09). Institute of Electrical and Electronic Engineers (IEEE), May 27-29, 2009. http://ieeexplore.ieee.org/iel5/5091069/5091070/05091126.pdf. @inproceedings{AufderMaur_2009, author = {M.~{Auf der Maur} and M.~Povolotskyi and F.~Sacconi and G.~Romano and G.~Penazzi and A.~Pecchia and A.~{Di Carlo}}, title = {{Multiscale-multiphysics simulation of nanostructured devices: the TiberCAD project}}, booktitle = {{13th International Workshop on Computational Electronics (IWCE '09)}}, publisher = {Institute of Electrical and Electronic Engineers (IEEE)}, month = may # {~27--29,}, year = {2009}, note = {\url{http://ieeexplore.ieee.org/iel5/5091069/5091070/05091126.pdf}} }  [10] D. Gaston, G. Hansen, and C. Newman. MOOSE: A parallel computational framework for coupled systems of nonlinear equations. In International Conference on Mathematics, Computational Methods & Reactor Physics (M&C 2009), Saratoga Springs, New York, May 7-9, 2009. http://www.inl.gov/technicalpublications/Documents/4336141.pdf. @conference{Gaston_2009c, author = {D.~Gaston and G.~Hansen and C.~Newman}, title = {{MOOSE: A parallel computational framework for coupled systems of nonlinear equations}}, booktitle = {International Conference on Mathematics, Computational Methods \& Reactor Physics (M\&C 2009)}, address = {Saratoga Springs, New York}, month = may # {~7--9,}, year = {2009}, note = {\url{http://www.inl.gov/technicalpublications/Documents/4336141.pdf}} }  [11] H. Park, D. Gaston, S. Kadioglu, D. Knoll, R. Martineau, W. Taitano, and D. Lebrun-Grandié. Tightly coupled multiphysics simulations for pebble bed reactors. In International Conference on Mathematics, Computational Methods & Reactor Physics (M&C 2009), Saratoga Springs, New York, May 7-9, 2009. http://mathematicsandcomputation.freezoka.net/MC09/pdfs/201237.pdf. @conference{Park_2009, author = {H.~Park and D.~Gaston and S.~Kadioglu and D.~Knoll and R.~Martineau and W.~Taitano and D.~Lebrun-Grandi\'{e}}, title = {Tightly coupled multiphysics simulations for pebble bed reactors}, booktitle = {International Conference on Mathematics, Computational Methods \& Reactor Physics (M\&C 2009)}, address = {Saratoga Springs, New York}, month = may # {~7--9,}, year = {2009}, note = {\url{http://mathematicsandcomputation.freezoka.net/MC09/pdfs/201237.pdf}} }  [12] V. S. Mahadevan, J. C. Ragusa, and V. Mousseau. Verification of multiphysics software: Space and time convergence studies for nonlinearly coupled applications. In International Conference on Mathematics, Computational Methods & Reactor Physics (M&C 2009), Saratoga Springs, New York, May 7-9, 2009. http://www.inl.gov/technicalpublications/Documents/4247162.pdf. @conference{Mahadevan_2009, author = {V.~S.~Mahadevan and J.~C.~Ragusa and V.~Mousseau}, title = {Verification of Multiphysics software: Space and time convergence studies for nonlinearly coupled applications}, booktitle = {International Conference on Mathematics, Computational Methods \& Reactor Physics (M\&C 2009)}, address = {Saratoga Springs, New York}, month = may # {~7--9,}, year = {2009}, note = {\url{http://www.inl.gov/technicalpublications/Documents/4247162.pdf}} }  [13] M. F. Barone, I. Kalashnikova, D. J. Segalman, and H. K. Thornquist. Stable Galerkin reduced order models for linearized compressible flow. Journal of Computational Physics, 228(6):1932-1946, April 2009. http://dx.doi.org/10.1016/j.jcp.2008.11.015. @article{Barone_2009, author = {M.~F.~Barone and I.~Kalashnikova and D.~J.~Segalman and H.~K.~Thornquist}, title = {{Stable Galerkin reduced order models for linearized compressible flow}}, journal = {Journal of Computational Physics}, volume = {228}, number = {6}, pages = {1932--1946}, year = {2009}, month = apr, issn = {0021-9991}, note = {\url{http://dx.doi.org/10.1016/j.jcp.2008.11.015}} }  [14] M. Polidori. Set Up and Preliminary Assessment of a 3D Numerical Model for the Thermo-Fluid Dynamics Analysis of an Open Square Lattice Core of a Lead Cooled Reactor. Technical Report RSE/2009/84, Ente per le Nuove tecnologie, l'Energia e l'Ambiente (ENEA), March 2009. http://www.enea.it/enea_paese/sistema_elettrico/Nucleare_fissione/Reattori_Innovativi/RSE84.pdf. @techreport{Polidori_2009, author = {M.~Polidori}, title = {{Set Up and Preliminary Assessment of a 3D Numerical Model for the Thermo-Fluid Dynamics Analysis of an Open Square Lattice Core of a Lead Cooled Reactor}}, institution = {Ente per le Nuove tecnologie, l'Energia e l'Ambiente (ENEA)}, number = {RSE/2009/84}, year = {2009}, month = mar, note = {\url{http://www.enea.it/enea_paese/sistema_elettrico/ Nucleare_fissione/Reattori_Innovativi/RSE84.pdf}} }  [15] S. Lu et al. Multiscale Modeling in Rodent Ventricular Myocytes. IEEE Engineering in Medicine and Biology Magazine, 28(2):46-57, March 2009. http://www.ncbi.nlm.nih.gov/pubmed/19349251. @article{S_Lu_2009, author = {S.~Lu and others}, title = {{Multiscale Modeling in Rodent Ventricular Myocytes}}, journal = {IEEE Engineering in Medicine and Biology Magazine}, year = 2009, month = mar, volume = 28, number = 2, pages = {46--57}, note = {\url{http://www.ncbi.nlm.nih.gov/pubmed/19349251}} }  [16] N. M. Abukhdeir and A. D. Rey. Shape-dynamic growth, structure, and elasticity of homogeneously oriented spherulites in an isotropic/smectic-A mesophase transition. Liquid Crystals, 36(10-11):1125-1137, 2009. http://dx.doi.org/10.1080/02678290902878754. @article{Abukhdeir_2009, author = {N.~M.~Abukhdeir and A.~D.~Rey}, title = {{Shape-dynamic growth, structure, and elasticity of homogeneously oriented spherulites in an isotropic/smectic-A mesophase transition}}, journal = {Liquid Crystals}, year = 2009, volume = 36, number = {10--11}, pages = {1125--1137}, note = {\url{http://dx.doi.org/10.1080/02678290902878754}} }  [17] M. Blome, H. R. Maurer, and K. Schmidt. Advances on 3D geoelectric forward solver techniques. Geophysical Journal International, 176(3):740-752, 2009. http:dx.doi.org/10.1111/j.1365-246X.2008.04006.x. @article{Blome_2009, author = {M.~Blome and H.~R.~Maurer and K.~Schmidt}, title = {{Advances on 3D geoelectric forward solver techniques}}, journal = {Geophysical Journal International}, year = 2009, volume = 176, number = 3, pages = {740--752}, note = {\url{http:dx.doi.org/10.1111/j.1365-246X.2008.04006.x}} }  [18] M. Auf der Maur, M. Povolotskyi, F. Sacconi, A. Pecchia, G. Romano, G. Penazzi, and A. Di Carlo. TiberCAD: towards multiscale simulation of optoelectronic devices. Optical and Quantum Electronics, 40(14):1077-1083, 2009. http://dx.doi.org/10.1007/s11082-009-9272-7. @article{AufderMaur_2009b, author = {M.~{Auf der Maur} and M.~Povolotskyi and F.~Sacconi and A.~Pecchia and G.~Romano and G.~Penazzi and A.~{Di Carlo}}, title = {{TiberCAD: towards multiscale simulation of optoelectronic devices}}, pages = {1077--1083}, year = 2009, journal = {Optical and Quantum Electronics}, volume = {40}, number = {14}, note = {\url{http://dx.doi.org/10.1007/s11082-009-9272-7}} }  [19] D. J. Knezevic and E. Süli. A Deterministic Multiscale Approach for Simulating Dilute Polymeric Fluids. In Lecture Notes in Computational Science and Engineering, BAIL 2008 - Boundary and Interior Layers, volume 69, pages 23-38. Springer, Berlin Heidelberg, 2009. http://dx.doi.org/10.1007/978-3-642-00605-0. @incollection{Knezevic_2009, author = {D.~J.~Knezevic and E.~S\"{u}li}, title = {{A Deterministic Multiscale Approach for Simulating Dilute Polymeric Fluids}}, pages = {23--38}, year = 2009, publisher = {Springer}, address = {Berlin Heidelberg}, booktitle = {Lecture Notes in Computational Science and Engineering, BAIL 2008 - Boundary and Interior Layers}, volume = {69}, note = {\url{http://dx.doi.org/10.1007/978-3-642-00605-0}} }  [20] Y. Lu, H. B. Machado, A. Douraghy, D. Stout, H. Herschman, and A. F. Chatziioannou. Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework. Optics Express, 17(19):16681-16695, 2009. http://dx.doi.org/10.1364/OE.17.016681. @article{Lu_2009, author = {Y.~Lu and H.~B.~Machado and A.~Douraghy and D.~Stout and H.~Herschman and A.~F.~Chatziioannou}, title = {Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework}, journal = {Optics Express}, number = {19}, pages = {16681--16695}, volume = {17}, year = {2009}, note = {\url{http://dx.doi.org/10.1364/OE.17.016681}} }  [21] D. Xu, J. Stare, and A. L. Cooksy. Solving the vibrational Schrödinger equation on an arbitrary multidimensional potential energy surface by the finite element method. Computer Physics Communications, 180(11):2079-2094, 2009. http://dx.doi.org/10.1016/j.cpc.2009.06.010. @article{Xu_2009, author = {D.~Xu and J.~Stare and A.~L.~Cooksy}, title = {Solving the vibrational {S}chr\"{o}dinger equation on an arbitrary multidimensional potential energy surface by the finite element method}, journal = {Computer Physics Communications}, volume = {180}, number = {11}, pages = {2079--2094}, year = {2009}, note = {\url{http://dx.doi.org/10.1016/j.cpc.2009.06.010}} }  [22] D. Gaston, C. Newman, G. Hansen, and D. Lebrun-Grandié. MOOSE: A parallel computational framework for coupled systems of nonlinear equations. Nuclear Engineering and Design, 239(10):1768-1778, 2009. http://dx.doi.org/10.1016/j.nucengdes.2009.05.021. @article{Gaston_2009b, author = {D.~Gaston and C.~Newman and G.~Hansen and D.~Lebrun-Grandi\'{e}}, title = {{MOOSE}: A parallel computational framework for coupled systems of nonlinear equations}, journal = {Nuclear Engineering and Design}, volume = {239}, number = {10}, pages = {1768--1778}, year = {2009}, note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2009.05.021}} }  [23] I. A. Jones, W. Ruijter, and A. C. Long. A novel tetrahedral element for static and dynamic analysis of laminated composites. Journal of Physics: Conference Series, 181:012042 (8pp), 2009. http://dx.doi.org/10.1088/1742-6596/181/1/012042. @article{Jones_2009, author = {I.~A.~Jones and W.~Ruijter and A.~C.~Long}, title = {A novel tetrahedral element for static and dynamic analysis of laminated composites}, journal = {Journal of Physics: Conference Series}, volume = {181}, pages = {012042 (8pp)}, note = {\url{http://dx.doi.org/10.1088/1742-6596/181/1/012042}}, year = {2009} }  [24] D. Gaston, G. Hansen, S. Kadioglu, D. A. Knoll, C. Newman, H. Park, C. Permann, and W. Taitano. Parallel multiphysics algorithms and software for computational nuclear engineering. Journal of Physics: Conference Series, 180:012012 (10pp), 2009. http://dx.doi.org/10.1088/1742-6596/180/1/012012. @article{Gaston_2009, author = {D.~Gaston and G.~Hansen and S.~Kadioglu and D.~A.~Knoll and C.~Newman and H.~Park and C.~Permann and W.~Taitano}, title = {Parallel multiphysics algorithms and software for computational nuclear engineering}, journal = {Journal of Physics: Conference Series}, volume = {180}, pages = {012012 (10pp)}, year = {2009}, note = {\url{http://dx.doi.org/10.1088/1742-6596/180/1/012012}} }  [25] M. P. Lüthi. Transient response of idealized glaciers to climate variations. Journal of Glaciology, 55(193):918-930, 2009. http://dx.doi.org/10.3189/002214309790152519. @article{Luethi2009, author = {M.~P.~L{\"u}thi}, title = {Transient response of idealized glaciers to climate variations}, journal = {Journal of Glaciology}, year = 2009, number = 193, volume = 55, pages = {918--930}, note = {\url{http://dx.doi.org/10.3189/002214309790152519}} }  [26] A. M. P. Valli, R. N. Elias, G. F. Carey, and A. L. G. A. Coutinho. PID adaptive control of incremental and arclength continuation in nonlinear applications. International Journal for Numerical Methods in Fluids, 61(11):1181-1200, 2009. http://dx.doi.org/10.1002/fld.1998. @article{Valli_2009, author = {A. M. P. Valli and R. N. Elias and G. F. Carey and A. L. G. A. Coutinho}, title = {{PID adaptive control of incremental and arclength continuation in nonlinear applications}}, journal = {International Journal for Numerical Methods in Fluids}, year = 2009, volume = {61}, number = {11}, pages = {1181--1200}, note = {\url{http://dx.doi.org/10.1002/fld.1998}} }  [27] J. Biermann, O. von Estorff, S. Petersen, and C. Wenterodt. Higher order finite and infinite elements for the solution of Helmholtz problems. Computer Methods in Applied Mechanics and Engineering, 198(13-14):1171-1188, 2009. http://dx.doi.org/10.1016/j.cma.2008.11.009. @article{Biermann_2009, author = {J.~Biermann and O.~von Estorff and S.~Petersen and C.~Wenterodt}, title = {{Higher order finite and infinite elements for the solution of Helmholtz problems}}, journal = {Computer Methods in Applied Mechanics and Engineering}, volume = {198}, number = {13--14}, pages = {1171--1188}, year = {2009}, issn = {0045-7825}, note = {\url{http://dx.doi.org/10.1016/j.cma.2008.11.009}} }  [28] B. S. Kirk. Multidimensional Assessment of Modeling Error in Typical High-Speed Wind-Tunnel Heat-Transfer Data-Reduction Schemes. AIAA Journal of Thermophysics and Heat Transfer, 23(1):186-191, January 2009. http://dx.doi.org/10.2514/1.35989. @article{Kirk_2009, author = {B.~S.~Kirk}, title = {{Multidimensional Assessment of Modeling Error in Typical High-Speed Wind-Tunnel Heat-Transfer Data-Reduction Schemes}}, journal = {AIAA Journal of Thermophysics and Heat Transfer}, year = 2009, month = jan, volume = 23, number = 1, pages = {186--191}, note = {\url{http://dx.doi.org/10.2514/1.35989}} } 

## 2008

 [1] A. Cervone and S. Manservisi. A three-dimensional CFD program for the simulation of the thermo-hydraulic behaviour of an open core liquid metal reactor. Technical Report RSE/2009/85, ENEA: Ente per le Nuove tecnologie, l'Energia e l'Ambiente, December 2008. http://www.enea.it/attivita_ricerca/energia/sistema_elettrico/Nucleare_fissione/Reattori_Innovativi/RSE85.pdf. @techreport{Cervone_2008, author = {A.~Cervone and S.~Manservisi}, title = {{A three-dimensional CFD program for the simulation of the thermo-hydraulic behaviour of an open core liquid metal reactor}}, institution = {ENEA: Ente per le Nuove tecnologie, l'Energia e l'Ambiente}, day = 16, month = dec, year = 2008, number = {RSE/2009/85}, note = {\url{http://www.enea.it/attivita_ricerca/energia/ sistema_elettrico/Nucleare_fissione/Reattori_Innovativi/RSE85.pdf}} }  [2] A. Hawkins and J. T. Oden. Toward a predictive model of tumor growth. Technical report, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, November 2008. http://www.ices.utexas.edu/research/reports/2008/0829.pdf. @techreport{Hawkins_2008, author = {A.~Hawkins and J.~T.~Oden}, title = {{Toward a predictive model of tumor growth}}, institution = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin}, day = {20}, month = nov, year = {2008}, note = {\url{http://www.ices.utexas.edu/research/reports/2008/0829.pdf}} }  [3] L. Antiga, M. Piccinelli, L. Botti, B. Ene-Iordache, A. Remuzzi, and D. A. Steinman. An image-based modeling framework for patient-specific computational hemodynamics. Medical and Biological Engineering and Computing, 46(11):1097-1112, November 2008. http://dx.doi.org/10.1007/s11517-008-0420-1. @article{Antiga_2008, author = {L.~Antiga and M.~Piccinelli and L.~Botti and B.~Ene-Iordache and A.~Remuzzi and D.~A.~Steinman}, title = {{An image-based modeling framework for patient-specific computational hemodynamics}}, journal = {Medical and Biological Engineering and Computing}, year = 2008, volume = 46, number = 11, month = nov, pages = {1097--1112}, note = {\url{http://dx.doi.org/10.1007/s11517-008-0420-1}} }  [4] D. Xu, J. Stare, and A. L. Cooksy. Solving the vibrational Schrödinger equation on an arbitrary multidimensional potential energy surface by the finite element method. Technical Report CSRCR2008-26, Computational Science Research Center, San Diego State University, October 2008. @techreport{Xu_2008, author = {D.~Xu and J.~Stare and A.~L.~Cooksy}, title = {{Solving the vibrational {S}chr\"{o}dinger equation on an arbitrary multidimensional potential energy surface by the finite element method}}, institution = {Computational Science Research Center, San Diego State University}, day = {15}, month = oct, year = {2008}, number = {CSRCR2008-26} }  [5] V. S. Mahadevan and J. C. Ragusa. High-order spatio-temporal schemes for coupled, multi-physics reactor simulations. Technical report, Idaho National Laboratory, September 2008. http://www.inl.gov/technicalpublications/Documents/4120524.pdf. @techreport{Mahadevan_2008, author = {V.~S.~Mahadevan and J.~C.~Ragusa}, title = {High-order spatio-temporal schemes for coupled, multi-physics reactor simulations}, institution = {Idaho National Laboratory}, month = sep, year = {2008}, note = {\url{http://www.inl.gov/technicalpublications/Documents/4120524.pdf}} }  [6] F. Galbusera, M. Cioffi, and M. T. Raimondi. An in silico bioreactor for simulating laboratory experiments in tissue engineering. Biomedical Microdevices, 10(4):547-554, August 2008. http://dx.doi.org/10.1007/s10544-008-9164-9. @article{Galbusera_2008, author = {F.~Galbusera and M.~Cioffi and M.~T.~Raimondi}, title = {{An in silico bioreactor for simulating laboratory experiments in tissue engineering}}, journal = {Biomedical Microdevices}, year = 2008, volume = 10, number = 4, month = aug, pages = {547--554}, note = {\url{http://dx.doi.org/10.1007/s10544-008-9164-9}} }  [7] M. Piccinelli, L. Botti, B. Ene-Iordache, A. Remuzzi, A. Veneziani, and L. Antiga. Link between vortex structures and voronoi diagram in cerebral aneurysms. Journal of Biomechanics, 41, Supplement 1:S12, July 2008. @article{Piccinelli_2008, author = {M.~Piccinelli and L.~Botti and B.~Ene-Iordache and A.~Remuzzi and A.~Veneziani and L.~Antiga}, title = {{Link between vortex structures and voronoi diagram in cerebral aneurysms}}, journal = {Journal of Biomechanics}, year = 2008, month = jul, volume = {41, Supplement 1}, pages = {S12} }  [8] K. Van Canneyt, R. Kaminsky, L. Botti, L. Antiga, J. Tordoir, P. Verdonck, and S. Eloot. Can a kinked arterio-venous graft cause instable flow? a patient-specific validated computational study. Journal of Biomechanics, 41(Supplement 1):S210, July 2008. http://dx.doi.org/10.1016/S0021-9290(08)70210-0. @article{VanCanneyt_2008, author = {K.~Van Canneyt and R.~Kaminsky and L.~Botti and L.~Antiga and J.~Tordoir and P.~Verdonck and S.~Eloot}, title = {CAN A KINKED ARTERIO-VENOUS GRAFT CAUSE INSTABLE FLOW? A PATIENT-SPECIFIC VALIDATED COMPUTATIONAL STUDY}, journal = {Journal of Biomechanics}, volume = {41}, number = {Supplement 1}, pages = {S210}, year = {2008}, month = jul, issn = {0021-9290}, note = {\url{http://dx.doi.org/10.1016/S0021-9290(08)70210-0}} }  [9] L. Botti, M. Piccinelli, B. Ene-Iordache, A. Remuzzi, and L. Antiga. An open source parallel AMR FE solver for biological flows based on the LibMesh C++ library. Journal of Biomechanics, 41(Supplement 1):S211, July 2008. http://dx.doi.org/10.1016/S0021-9290(08)70211-2. @article{Botti_2008, author = {L.~Botti and M.~Piccinelli and B.~Ene-Iordache and A.~Remuzzi and L.~Antiga}, title = {AN OPEN SOURCE PARALLEL {AMR} {FE} SOLVER FOR BIOLOGICAL FLOWS BASED ON THE {LibMesh C++} LIBRARY}, journal = {Journal of Biomechanics}, volume = {41}, number = {Supplement 1}, pages = {S211}, year = {2008}, month = jul, issn = {0021-9290}, note = {\url{http://dx.doi.org/10.1016/S0021-9290(08)70211-2}} }  [10] H. T. Ahn, M. Shashkov, and M. A. Christon. The moment-of-fluid method in action. Communications in Numerical Methods in Engineering, 25(10):1009-1018, July 2008. http://dx.doi.org/10.1002/cnm.1135. @article{Ahn_2008, author = {{Ahn}, H.~T. and {Shashkov}, M. and M.~A.~Christon}, title = {{The moment-of-fluid method in action}}, journal = {Communications in Numerical Methods in Engineering}, year = 2008, month = jul, volume = {25}, number = {10}, pages = {1009--1018}, note = {\url{http://dx.doi.org/10.1002/cnm.1135}} }  [11] A. C. Powell, IV and R. Arroyave. Open source software for materials and process modeling. Journal of the Minerals, Metals and Materials Society, 60(5):32-39, May 2008. http://dx.doi.org/10.1007/s11837-008-0057-4. @article{Powell_2008, author = {{Powell}, IV, A.~C. and {Arroyave}, R.}, title = {{Open source software for materials and process modeling}}, journal = {Journal of the Minerals, Metals and Materials Society}, year = 2008, month = may, volume = 60, number = 5, pages = {32--39}, note = {\url{http://dx.doi.org/10.1007/s11837-008-0057-4}} }  [12] T. Kröger and T. Preusser. Stability of the 8-tetrahedra shortest-interior-edge partitioning method. Numerische Mathematik, 109(3):435-457, May 2008. http://dx.doi.org/10.1007/s00211-008-0148-8. @article{Kroger_2008, author = {T.~Kr\"{o}ger and T.~Preusser}, title = {{Stability of the 8-tetrahedra shortest-interior-edge partitioning method}}, journal = {Numerische Mathematik}, year = 2008, month = may, volume = 109, number = 3, pages = {435--457}, note = {\url{http://dx.doi.org/10.1007/s00211-008-0148-8}} }  [13] M. Bhatia and E. Livnet. Design-oriented thermostructural analysis with external and internal radiation, Part 1: Steady state. AIAA Journal, 46(3):578-590, March 2008. http://dx.doi.org/10.2514/1.26236. @article{Bhatia_2008, author = {M.~Bhatia and E.~Livnet}, title = {{Design-oriented thermostructural analysis with external and internal radiation, Part 1: Steady state}}, journal = {AIAA Journal}, year = 2008, volume = 46, number = 3, month = mar, pages = {578--590}, note = {\url{http://dx.doi.org/10.2514/1.26236}} }  [14] V. M. Kolodkin, V. S. Knyazhin, M. V. Kolodkin, and V. M. Senopal'nikov. Design of the technology of the blacksmith mold (Russian). News of the Udmurtian State University, Physics and Chemistry Section, 1:120-128, February 2008. http://vestnik.udsu.ru/2008/2008-04/vuu_08_041_10.pdf. @article{Kolodkin_2008, author = {V.~M.~Kolodkin and V.~S.~Knyazhin and M.~V.~Kolodkin and V.~M.~Senopal'nikov}, title = {{Design of the technology of the blacksmith mold (Russian)}}, journal = {News of the Udmurtian State University, Physics and Chemistry Section}, year = 2008, volume = 1, month = feb, pages = {120--128}, note = {\url{http://vestnik.udsu.ru/2008/2008-04/vuu_08_041_10.pdf}} }  [15] M. F. Barone, D. J. Segalman, H. Thornquist, and I. Kalashnikova. Galerkin reduced order models for compressible flow with structural interaction. In 46th AIAA Aerospace Sciences Meeting and Exhibit, Reno, NV, 2008. http://www.stanford.edu/~irinak/reno08.pdf. @conference{Barone_2008, author = {M.~F.~Barone and D.~J.~Segalman and H.~Thornquist and I.~Kalashnikova}, title = {Galerkin reduced order models for compressible flow with structural interaction}, booktitle = {46th AIAA Aerospace Sciences Meeting and Exhibit}, address = {Reno, NV}, year = {2008}, note = {\url{http://www.stanford.edu/~irinak/reno08.pdf}} }  [16] O. von Estorff, S. Petersen, and D. Dreyer. Efficient Infinite Elements based on Jacobi Polynomials. In Steffen Marburg and Bodo Nolte, editors, Computational Acoustics of Noise Propagation in Fluids-Finite and Boundary Element Methods, pages 231-250. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/978-3-540-77448-8_9. @incollection{VonEstorff_2008, author = {O.~{von Estorff} and S.~Petersen and D.~Dreyer}, title = {{Efficient Infinite Elements based on Jacobi Polynomials}}, pages = {231--250}, year = 2008, publisher = {Springer Berlin Heidelberg}, editor = {Steffen Marburg and Bodo Nolte}, booktitle = {Computational Acoustics of Noise Propagation in Fluids--Finite and Boundary Element Methods}, volume = {}, note = {\url{http://dx.doi.org/10.1007/978-3-540-77448-8_9}} }  [17] E. De Sturler, G. H. Paulino, and S. Wang. Topology optimization with adaptive mesh refinement. In J. F. Abel and J. R. Cooke, editors, Proceedings of the 6th International Conference on Computation of Shell and Spatial Structures (IASS-IACM 2008), Ithaca, NY, 2008. Cornell University. http://www.math.vt.edu/people/sturler/publications/Proc-IASS-IACM_TopOptAMR_SturlerPaulinoWang_2008.pdf. @inproceedings{DeSturler_2008, author = {E.~{De Sturler} and G.~H.~Paulino and S.~Wang}, title = {Topology Optimization with Adaptive Mesh Refinement}, booktitle = {{Proceedings of the 6th International Conference on Computation of Shell and Spatial Structures (IASS-IACM 2008)}}, editor = {J.~F.~Abel and J.~R.~Cooke}, publisher = {Cornell University}, address = {Ithaca, NY}, year = {2008}, note = {\url{http://www.math.vt.edu/people/sturler/ publications/Proc-IASS-IACM_TopOptAMR_SturlerPaulinoWang_2008.pdf}} }  [18] R. H. Stogner, G. F. Carey, and B. T. Murray. Approximation of Cahn-Hilliard diffuse interface models using parallel adaptive mesh refinement and coarsening with C1 elements. International Journal for Numerical Methods in Engineering, 76(5):636-661, 2008. http://dx.doi.org/10.1002/nme.2337. @article{Stogner_2008, author = {R.~H.~Stogner and G.~F.~Carey and B.~T.~Murray}, title = {{Approximation of Cahn-Hilliard diffuse interface models using parallel adaptive mesh refinement and coarsening with $C^1$ elements}}, journal = {International Journal for Numerical Methods in Engineering}, year = 2008, volume = 76, number = 5, pages = {636--661}, note = {\url{http://dx.doi.org/10.1002/nme.2337}} }  [19] S. Berrone and E. Süli. Two-sided a posteriori error bounds for incompressible quasi-Newtonian flows. IMA Journal of Numerical Analysis, 28(2):382-421, 2008. http://dx.doi.org/10.1093/imanum/drm017. @article{Berrone_2008, author = {S.~Berrone and E.~S\"{u}li}, title = {{Two-sided a posteriori error bounds for incompressible quasi-Newtonian flows}}, journal = {IMA Journal of Numerical Analysis}, year = 2008, volume = 28, number = 2, pages = {382--421}, note = {\url{http://dx.doi.org/10.1093/imanum/drm017}} }  [20] B. S. Kirk and G. F. Carey. Development and validation of a SUPG finite element scheme for the compressible Navier-Stokes equations using a modified inviscid flux discretization. International Journal for Numerical Methods in Fluids, 57(3):265-293, 2008. http://dx.doi.org/10.1002/fld.1635. @article{Kirk_2008a, author = {B.~S.~Kirk and G.~F.~Carey}, title = {{Development and validation of a SUPG finite element scheme for the compressible Navier-Stokes equations using a modified inviscid flux discretization}}, journal = {International Journal for Numerical Methods in Fluids}, year = 2008, volume = 57, number = 3, pages = {265--293}, note = {\url{http://dx.doi.org/10.1002/fld.1635}} }  [21] M. Brinkmeier, U. Nackenhorst, S. Petersen, and O. von Estorff. A numerical model for the simulation of tire rolling noise. Journal of Sound and Vibration, 309(1-2):20-39, January 2008. http://dx.doi.org/10.1016/j.jsv.2006.11.040. @article{Brinkmeier_2008, author = {Brinkmeier, M. and Nackenhorst, U. and Petersen, S. and {von Estorff}, O.}, title = {A Numerical Model for the Simulation of Tire Rolling Noise}, journal = {Journal of Sound and Vibration}, year = {2008}, month = jan, volume = {309}, number = {1--2}, pages = {20--39}, note = {\url{http://dx.doi.org/10.1016/j.jsv.2006.11.040}} }  [22] Y. Lu and A. F. Chatziioannou. Parallel adaptive finite element simulation for optical molecular imaging with simplified spherical harmonics approximation. In P. Sellin, editor, Nuclear Science Symposium Conference Record (NSS08), pages 4039-4042. IEEE, 2008. http://dx.doi.org/10.1109/NSSMIC.2008.4774171. @inproceedings{Lu_2008, author = {Y.~Lu and A.~F.~Chatziioannou}, title = {{Parallel adaptive finite element simulation for optical molecular imaging with simplified spherical harmonics approximation}}, booktitle = {{Nuclear Science Symposium Conference Record (NSS08)}}, editor = {P.~Sellin}, pages = {4039--4042}, publisher = {IEEE}, year = {2008}, note = {\url{http://dx.doi.org/10.1109/NSSMIC.2008.4774171}} } 

## 2007

 [1] M. Anderson and J.-H. Kimn. A numerical approach to space-time finite elements for the wave equation. Journal of Computational Physics, 226:466-476, September 2007. http://dx.doi.org/10.1016/j.jcp.2007.04.021. @article{Anderson_2007, author = {{Anderson}, M. and {Kimn}, {J.-H.}}, title = {{A numerical approach to space-time finite elements for the wave equation}}, journal = {Journal of Computational Physics}, eprint = {arXiv:gr-qc/0601099}, year = 2007, month = sep, volume = 226, pages = {466--476}, note = {\url{http://dx.doi.org/10.1016/j.jcp.2007.04.021}} }  [2] M. R. F. Kidner, K. Idrisi, J. P. Carneal, and M. E. Johnson. Comparison of experiment, finite element, and wave based models for mass inclusions in poro-elastic layers. In Proceedings of the 14th International Congress on Sound & Vibration (ICSV14), Cairns, Australia, July 9-12, 2007. http://data.mecheng.adelaide.edu.au/avc/publications/public_papers/2007/kidner_icsv14_2007_p577.pdf. @inproceedings{Kidner_2007, author = {M.~R.~F.~Kidner and K.~Idrisi and J.~P.~Carneal and M.~E.~Johnson}, title = {{Comparison of experiment, finite element, and wave based models for mass inclusions in poro-elastic layers}}, booktitle = {{Proceedings of the 14th International Congress on Sound \& Vibration (ICSV14)}}, address = {Cairns, Australia}, year = 2007, month = jul # {~9--12,}, note = {\url{http://data.mecheng.adelaide.edu.au/avc/ publications/public_papers/2007/kidner_icsv14_2007_p577.pdf}} }  [3] J. Steensland and J. W. Peterson. A Study of Dynamically Adaptive Partitioning for AMR. In Proceedings of the 2007 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'07) Volume 2, pages 503-509, Las Vegas, NV, June 25-28, 2007. CSREA Press. ISBN: 1-60132-021-3. @inproceedings{Steensland_2007, author = {J.~Steensland and J.~W.~Peterson}, title = {{A Study of Dynamically Adaptive Partitioning for AMR}}, booktitle = {{Proceedings of the 2007 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'07) Volume 2}}, month = jun # {~25--28,}, pages = {503--509}, address = {Las Vegas, NV}, publisher = {CSREA Press}, year = {2007}, note = {ISBN: 1-60132-021-3} }  [4] M. Auf der Maur, M. Povolotskyi, F. Sacconi, and A. di Carlo. TIBERCAD: A new multiscale simulator for electronic and optoelectronic devices. Superlattices and Microstructures, 41:381-385, May 2007. http://dx.doi.org/10.1016/j.spmi.2007.03.011. @article{AufderMaur_2007, author = {{Auf der Maur}, M. and {Povolotskyi}, M. and {Sacconi}, F. and {di Carlo}, A.}, title = {{TIBERCAD: A new multiscale simulator for electronic and optoelectronic devices}}, journal = {Superlattices and Microstructures}, year = 2007, month = may, volume = 41, pages = {381--385}, note = {\url{http://dx.doi.org/10.1016/j.spmi.2007.03.011}} }  [5] R. H. Stogner and G. F. Carey. C1 macroelements in adaptive finite element methods. Int. J. Numerical Methods in Engineering, 70(9):1076-1095, May 2007. http://dx.doi.org/10.1002/nme.1912. @article{Stogner_2007, author = {R.~H.~Stogner and G.~F.~Carey}, title = {{$C^1$} macroelements in adaptive finite element methods}, journal = {Int. J. Numerical Methods in Engineering}, volume = 70, number = 9, pages = {1076--1095}, month = may, year = 2007, note = {\url{http://dx.doi.org/10.1002/nme.1912}} }  [6] K. Nam and M. M. Aral. Optimal placement of monitoring sensors in lakes. In Proceedings of the 2007 Georgia Water Resources Conference, University of Georgia, March 27-29, 2007. http://www.uga.edu/water/publication/uploads/2007/3.6.4.pdf. @inproceedings{Nam_2007, author = {K.~Nam and M.~M.~Aral}, title = {{Optimal placement of monitoring sensors in lakes}}, booktitle = {Proceedings of the 2007 Georgia Water Resources Conference}, address = {University of Georgia}, month = mar # {~27--29,}, year = {2007}, note = {\url{http://www.uga.edu/water/publication/uploads/2007/3.6.4.pdf}} }  [7] J. Biermann, O. von Estorff, S. Petersen, and H. Schmidt. Computational model to investigate the sound radiation from rolling tires. Tire Science and Technology, 35(3):209-225, 2007. http://dx.doi.org/10.2346/1.2768608. @article{Biermann_2007, author = {J.~Biermann and O.~von Estorff and S.~Petersen and H.~Schmidt}, title = {Computational Model to Investigate the Sound Radiation from Rolling Tires}, publisher = {TIRSOC}, year = {2007}, journal = {Tire Science and Technology}, volume = {35}, number = {3}, pages = {209--225}, note = {\url{http://dx.doi.org/10.2346/1.2768608}} }  [8] J. W. Peterson, G. F. Carey, D. J. Knezevic, and B. T. Murray. Adaptive finite element methodology for tumor angiogenesis modeling. Int. J. Numer. Meth. Eng., 69(6):1212-1238, 2007. http://dx.doi.org/10.1002/nme.1802. @article{Peterson_2007, author = {J.~W.~Peterson and G.~F.~Carey and D.~J.~Knezevic and B.~T.~Murray}, title = {{Adaptive finite element methodology for tumor angiogenesis modeling}}, journal = {Int.~J.~Numer.~Meth.~Eng.}, volume = {69}, number = {6}, pages = {1212--1238}, year = {2007}, note = {\url{http://dx.doi.org/10.1002/nme.1802}} } 

## 2006

 [1] S. Berrone. Robust a posteriori error estimates for finite element discretizations of the heat equation with discontinuous coefficients. Mathematical Modelling and Numerical Analysis (M2AN), 40(6):991-1021, November 2006. http://dx.doi.org/10.1051/m2an:2006034. @article{Berrone_2006, author = {S.~Berrone}, title = {{Robust a posteriori error estimates for finite element discretizations of the heat equation with discontinuous coefficients}}, journal = {Mathematical Modelling and Numerical Analysis (M2AN)}, month = nov, year = 2006, volume = 40, number = 6, pages = {991--1021}, note = {\url{http://dx.doi.org/10.1051/m2an:2006034}} }  [2] J. J. Crookston, W. Ruijter, A. C. Long, and I. A. Jones. Modelling mechanical performance including damage development for textile composites using a grid-based finite element method with adaptive mesh refinement. In Proceedings of the 8th International Conference on Textile Composites (TEXCOMP-8), Nottingham, UK, October 16-18, 2006. http://textiles.nottingham.ac.uk/T09-Crookston.pdf. @inproceedings{Crookston_2006, author = {J.~J.~Crookston and W.~Ruijter and A.~C.~Long and I.~A.~Jones}, title = {Modelling mechanical performance including damage development for textile composites using a grid-based finite element method with adaptive mesh refinement}, booktitle = {{Proceedings of the 8th International Conference on Textile Composites (TEXCOMP-8)}}, month = oct # {~16--18,}, address = {Nottingham, UK}, year = {2006}, note = {\url{http://textiles.nottingham.ac.uk/T09-Crookston.pdf}} }  [3] D. J. Knezevic. Finite element methods for deterministic simulation of polymeric fluids. Technical Report NA-06/19, Oxford University Computing Laboratory, October 2006. http://www.maths.warwick.ac.uk/multiscale/MSPreprints/ox-NA-19-06.pdf. @techreport{Knezevic_2006, author = {D.~J.~Knezevic}, title = {Finite Element Methods for Deterministic Simulation of Polymeric Fluids}, institution = {Oxford University Computing Laboratory}, month = oct, year = {2006}, number = {NA-06/19}, note = {\url{http://www.maths.warwick.ac.uk/multiscale/MSPreprints/ox-NA-19-06.pdf}} }  [4] M. Schindler, P. Talkner, and P. Hänggi. Computing stationary free-surface shapes in microfluidics. Physics of Fluids, 18(10):103303, October 2006. http://dx.doi.org/10.1063/1.2361291. @article{Schindler_2006, author = {{Schindler}, M. and {Talkner}, P. and {H{\"a}nggi}, P.}, title = {{Computing stationary free-surface shapes in microfluidics}}, journal = {Physics of Fluids}, eprint = {arXiv:physics/0511217}, year = 2006, month = oct, volume = 18, number = 10, pages = {103303}, note = {\url{http://dx.doi.org/10.1063/1.2361291}} }  [5] L. Catabriga, J. J. Camata, A. M. P. Valli, A. L. G. A. Coutinho, and G. F. Carey. Reordering effects on preconditioned Krylov methods in AMR solutions of flow and transport, Paper CIL04-557. In Proceedings of the XXVII Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE). Brazilian Assoc. for Comp. Mechanics & Latin American Assoc. of Comp. Methods in Engineering, September 3-6, 2006. http://www.inf.ufes.br/~luciac/papers/CIL04_557.pdf. @inproceedings{Catabriga_2006, author = {L.~Catabriga and J.~J.~Camata and A.~M.~P.~Valli and A.~L.~G.~A.~Coutinho and G.~F.~Carey}, title = {{Reordering effects on preconditioned Krylov methods in AMR solutions of flow and transport, Paper CIL04-557}}, booktitle = {{Proceedings of the XXVII Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE)}}, publisher = {Brazilian Assoc. for Comp. Mechanics \& Latin American Assoc. of Comp. Methods in Engineering}, year = {2006}, month = sep # {~3--6,}, note = {\url{http://www.inf.ufes.br/~luciac/papers/CIL04_557.pdf}} }  [6] P. Simedrea, L. Antiga, and D. A. Steinman. Towards a new framework for simulating magnetic resonance imaging. In First Canadian Student Conference on Biomedical Computing (CSCBC 2006). Queen's University, Kingston Ontario, March 17-19, 2006. http://cscbc2006.cs.queensu.ca/assets/documents/Papers/paper108.pdf. @inproceedings{Simedrea_2006b, author = {P.~Simedrea and L.~Antiga and D.~A.~Steinman}, title = {{Towards a new framework for simulating magnetic resonance imaging}}, booktitle = {{First Canadian Student Conference on Biomedical Computing (CSCBC 2006)}}, publisher = {Queen's University, Kingston Ontario}, month = mar # {~17--19,}, year = {2006}, note = {\url{http://cscbc2006.cs.queensu.ca/assets/documents/Papers/paper108.pdf}} }  [7] P. Simedrea, L. Antiga, and D. A. Steinman. FE-MRI: Simulation of MRI using arbitrary finite elements. Proceedings of the International Society for Magnetic Resonance in Medicine, 14:2946, 2006. http://afni.nimh.nih.gov/sscc/staff/rwcox/ISMRM_2006/ISMRM%202006%20-%203340/files/02946.pdf. @article{Simedrea_2006, author = {P.~Simedrea and L.~Antiga and D.~A.~Steinman}, title = {{FE-MRI: Simulation of MRI using arbitrary finite elements}}, journal = {Proceedings of the International Society for Magnetic Resonance in Medicine}, year = 2006, volume = 14, pages = {2946}, note = {\url{http://afni.nimh.nih.gov/sscc/staff/rwcox/ISMRM_2006/ISMRM%202006%20-%203340/files/02946.pdf}} }  [8] O. von Estorff and S. Petersen. Vibro-acoustic investigations using finite and infinite elements. Proceedings of the Gesellschaft für Angewandte Mathematik und Mechanik (GAMM) Annual Meeting 2006 (PAMM), 6(1):615-616, 2006. http://dx.doi.org/10.1002/pamm.200610288. @article{Estorff_2006, author = {O.~von~Estorff and S.~Petersen}, title = {{Vibro-acoustic investigations using finite and infinite elements}}, journal = {{Proceedings of the Gesellschaft f\"{u}r Angewandte Mathematik und Mechanik (GAMM) Annual Meeting 2006 (PAMM)}}, year = 2006, volume = 6, number = 1, pages = {615--616}, note = {\url{http://dx.doi.org/10.1002/pamm.200610288}} }  [9] J. J. Marichalar, W. C. Rochelle, B. S. Kirk, and C. H. Campbell. Boundary Layer/Streamline Surface Catalytic Heating Predictions on Space Shuttle Orbiter. Journal of Spacecraft and Rockets, 43(6):1202-1215, 2006. http://dx.doi.org/10.2514/1.23082. @article{Marichalar_2006, author = {J.~J.~Marichalar and W.~C.~Rochelle and B.~S.~Kirk and C.~H.~Campbell}, title = {{Boundary Layer/Streamline Surface Catalytic Heating Predictions on Space Shuttle Orbiter}}, journal = {Journal of Spacecraft and Rockets}, year = 2006, volume = 43, number = 6, pages = {1202--1215}, note = {\url{http://dx.doi.org/10.2514/1.23082}} }  [10] S. Petersen, D. Dreyer, and O. von Estorff. Assessment of finite and spectral element shape functions for efficient iterative simulations of interior acoustics. Computer Methods in Applied Mechanics and Engineering, 195(44-47):6463-6478, 2006. http://dx.doi.org/10.1016/j.cma.2006.01.008. @article{Petersen_2006, author = {Petersen, S. and Dreyer, D. and {von Estorff}, O.}, title = {Assessment of finite and spectral element shape functions for efficient iterative simulations of interior acoustics}, journal = {Computer Methods in Applied Mechanics and Engineering}, year = {2006}, volume = {195}, number = {44--47}, pages = {6463--6478}, note = {\url{http://dx.doi.org/10.1016/j.cma.2006.01.008}} }  [11] D. Dreyer, S. Petersen, and O. von Estorff. Effectiveness and robustness of improved infinite elements for exterior acoustics. Computer Methods in Applied Mechanics and Engineering, 195(29-32):3591-3607, 2006. http://dx.doi.org/10.1016/j.cma.2005.01.019. @article{Dreyer_2006, author = {D. Dreyer and S. Petersen and O. von Estorff}, title = {Effectiveness and robustness of improved infinite elements for exterior acoustics}, journal = {Computer Methods in Applied Mechanics and Engineering}, volume = {195}, number = {29--32}, pages = {3591--3607}, year = {2006}, issn = {0045-7825}, note = {\url{http://dx.doi.org/10.1016/j.cma.2005.01.019}} } 

## 2005

 [1] J. J. Camata, L. Catabriga, A. M. P. Valli, A. L. G. A. Coutinho, and G. F. Carey. Numerical Evaluation of the LCD method implemented in the LibMesh library, Paper CIL16-692. In Proceedings of the XXVI Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE). Brazilian Assoc. for Comp. Mechanics & Latin American Assoc. of Comp. Methods in Engineering, October 19-21, 2005. http://www.inf.ufes.br/~luciac/papers/CIL-0692.pdf. @inproceedings{Camata_2005, author = {J.~J.~Camata and L.~Catabriga and A.~M.~P.~Valli and A.~L.~G.~A.~Coutinho and G.~F.~Carey}, title = {{Numerical Evaluation of the LCD method implemented in the LibMesh library, Paper CIL16-692}}, booktitle = {{Proceedings of the XXVI Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE)}}, publisher = {Brazilian Assoc. for Comp. Mechanics \& Latin American Assoc. of Comp. Methods in Engineering}, year = {2005}, month = oct # {~19--21,}, note = {\url{http://www.inf.ufes.br/~luciac/papers/CIL-0692.pdf}} }  [2] G. F. Carey, W. Barth, B. S. Kirk, and J. W. Peterson. Parallel CFD for Flow and Transport Applications Including Unstructured and Adaptive Grids. In Proceedings of Parallel CFD 2004: Multidisciplinary Applications, G. Winter, A. Ecer, J. Periaux, N. Satofuka and P. Fox (Eds), Amsterdam, The Netherlands, October 2005. Elsevier Science B.V. ISBN: 0444520244. @inproceedings{Carey_2005, author = {G.~F.~Carey and W.~Barth and B.~S.~Kirk and J.~W.~Peterson}, title = {{Parallel CFD for Flow and Transport Applications Including Unstructured and Adaptive Grids}}, booktitle = {Proceedings of Parallel CFD 2004: Multidisciplinary Applications, G.~Winter, A.~Ecer, J.~Periaux, N.~Satofuka and P.~Fox (Eds)}, publisher = {Elsevier Science B.V.}, address = {Amsterdam, The Netherlands}, month = oct, year = {2005}, note = {ISBN: 0444520244} } 

## 2004

 [1] L. Antiga. Imaging and numerical fluid dynamics for the study of the cardiovascular system. In M. Grigioni, editor, III Workshop Bioflumen: Technological innovation and evaluation of medical devices for the cardiovascular system, pages 55-59, Rome, Italy, November 2004. Istituto Superiore di Sanità. @inproceedings{Antiga_2004, author = {L.~Antiga}, title = {{Imaging and numerical fluid dynamics for the study of the cardiovascular system}}, booktitle = {{III Workshop Bioflumen: Technological innovation and evaluation of medical devices for the cardiovascular system}}, editor = {M.~Grigioni}, pages = {55--59}, publisher = {Istituto Superiore di Sanit\{a}}, address = {Rome, Italy}, month = nov, year = {2004} }  [2] G. F. Carey, W. Barth, J. A. Woods, B. S. Kirk, M. L. Anderson, S. Chow, and W. Bangerth. Modeling error and constitutive relations in simulation of flow and transport. Int. J. Numerical Methods in Fluid, 46(12):1211-1236, 2004. http://dx.doi.org/10.1002/fld.797. @article{Carey_2004b, author = {G.~F.~Carey and W.~Barth and J.~A.~Woods and B.~S.~Kirk and M.~L.~Anderson and S.~Chow and W.~Bangerth}, title = {Modeling error and constitutive relations in simulation of flow and transport}, journal = {Int. J. Numerical Methods in Fluid}, year = {2004}, volume = {46}, number = {12}, pages = {1211--1236}, note = {\url{http://dx.doi.org/10.1002/fld.797}} }  [3] G. F. Carey, M. Anderson, B. Carnes, and B. S. Kirk. Some aspects of adaptive grid technology related to boundary and interior layers. J. Comput. Appl. Math., 166(1):55-86, 2004. http://dx.doi.org/10.1016/j.cam.2003.09.036. @article{Carey_2004a, author = {G.~F. Carey and M.~Anderson and B.~Carnes and B.~S.~Kirk}, title = {Some aspects of adaptive grid technology related to boundary and interior layers}, journal = {J. Comput. Appl. Math.}, volume = {166}, number = {1}, year = {2004}, issn = {0377-0427}, pages = {55--86}, note = {\url{http://dx.doi.org/10.1016/j.cam.2003.09.036}} } 

Site Created By: libMesh Developers